Gene detail

Detailed information of RMX36765.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4234:340376...355668
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00008996

ATGGCAAATATTTTGGCTACCATAATCGCCATTGCAGCTGTCGTGGCAGCATATTTTTACTACAGACACGTAAGAAGCCATGATGGTCGTATTGTTGCAGTCTTGGAGGGTCTGAAGTCTTTGGAAAGAGAAAATCCAGTGCACGGAAAACCTAAAGTAGCAACTAGTTTTGAAGCTAACGTGGATTATTTTGTAGATTCTCTGGAGTTGTTTGAAGCGTTGAACCTTGAACCGCCCGAGCAAGCCAAACCTCACGACATTTTGCGGACTGAGAAAGAATTTTTGGAAACATTTGCGTTCTTCTTCAATCATAGCGCAGCATCATCCCGTTACATGACCGACAAAGATCTTTTTCGGAAGTTAGTCCTCAAATCCCAGGAAATTGAAGGAACTCGTAAACTAATTGGTGGCAGTGGATTACAAATTGGTAAACGCCTTGCCTTTGAAGGATGTCATGTTCTTTCAGCTGCTGATTCAAGTTCAGAATTACTGGAGATATTGCCAGAGAATTTAACAGCAGTGGGGAACATTGTAGAGGTTGATGATGTCCACTTGTTGTTGGAATATCCTGCACATTTTCCTTGGGGAAAGTATGAGTCCCAAAGAGCCAACAGACTAGTTTTACACAGCGATGAACACAATCCATATCTGAAGTCAATGGAAAAATTTCAGGAGAAAGTAAAAGACTTTTCACCGGCAGTTATGGTTGTATCAGGACTCCATATGTTAGATAATTTTCCTGGCTTTAACCCTGGGGACAGTGGTGAAATATTGAAAAAACTATCGTCTTTTCTTGACACATTGAAAGTTCCAATTCACTTTGAGATGGCCCCATTCCATCAAGAAACGTTCTTTGATGAACTTTTGCAGTATGTTGTTCCTTATTCAAGAAGTATGGGTATGAATGAACAGGAACTGCCTAACTTGTGGAGCAAGCTGCTCTATGGAAACATAACAGTTGTTTCAAGTCAGAAACCAAGGGTTGCAAAAGTACTGGATCTCATGAGAGATGTGTACAAGACCTCAAAAAAGGATTATGGAAAAAGAAGGAAGAGACCACTGACAAGACTTCATGTCCACACATTGGCATTTCAAGCAATTCTAACCAGGAAAGGATCAAACTGGAAACACACCAAGGCAGCTGCAGCAAAGGCCTCTTTGACAGCAACACGTCATGTGTGTGGCTCAGAAGAAATTGATCCTGACAAATCTAAATTGTTTATGGATGAGTCATTTTCTAAAAGTATAGTTCCAGGCAGTCCAAAAGTTGAATTCAATGCCAATTTGCCTGTTTCTTGTTGGGATGAAGATGATTATGAAATATGTGTTGCTCCAGTGTTAGTTTGTACCCAAGTATTGCAGACAGGAGGTGGCGGAGACCATATTACTGCTGGTGGCCTGGGCGTTAAAGGTGCAATGACCGAGAAACAGCGACTTGAACGCTCTTCTCACTCTCCATTGAGTGGTGCTGATGGAAGAGTGAATAAATTGAAAAACTTAAATCCGATCACGGGTGAATCTGAAGAACCCATATTGGTTAGCTTCGAAGACGTCAGTGCTGCCTCCTACAGGATTCGGAAAGGGGTTAAAAAAACACCATGTGAAAGATCTAGTATGTCAGAGGCATTGAAGATGGACTTGTATTTCAAGAAGGACTATCTTCAGCACACAGGAAGCTTCAAAGAGAGAGGTGCCAGAAACACACTTCTGATGTTGTCTAAAGTAGGTCCAGCTTTTGCTTTAAAGACTGTTGAAGAAGAAAACATTGTAATTTATTTCAGCTTAAGATCTATTGCATTAAAATGGTTTGCAAATGTCTCTAAACAGTCCAAAGAAATTTCCCTCAAGATGGCGAAGGCAAACGGATTAGCTTACATTAACGGGTATGATCATCCTCACATCCTATCAGGCCAAGGGACGCTGGGTTTAGAAATTGTAGAGGAAGTTCCCGACCTAGAGGCAGTTGTGATTCCTGTGGGCGGTGGAGGCCTATTGGCAGGTGTTGCTGTGGCAGTTAAGGGGTTACGCCCTGACGTGCAGATAATAGGTGTAGAGTCCGAGCGCTGCGCTAGCTTTCGGGCCGCAATGGATGCTGGTCATCCTGTCAAGATAGACGCCAATCAGTCTCAGACATTAGCTGATGGATTGTGTGTCTCCAAAGTTGGTTCAAACGCTTTTGCAACAGCCACAGGGCTAGTTGATAAAGTTATCAGTGTCAGCGAGGATTTCATTGCCCTCGCCATACTACGTCTTATTGAGGAAGAGAAAGCAGTTGTTGAAGGGGCTGGAGTCACGGCCTTTGCTGCTGTTCTTGCTGGCATGTTACCTGAACTACAGGATCGCAAGGTTGTGATACCGCTCTGTGGAGGAAATATTGACTCTACTGTGCTTGGTCGCTGTATTGATCGAGGATTAGCTGCAGATGGAAGGCTTTGTAGGTTTATTGTTACTGTTAGTGATCGGCCAGGTGGAATCGCTGAACTAACGCGACTGTTGGCTTCTCTGGGAGCCAGCGTGAAAGATATTTTCCACGAGAGAGCATGGCTCGTGTCCAGTGTGTTCAATGTTCAGATCAAAGTAGTACTTGAAGTAAGAGACCGCGAACATGGACTTCAAGTTAAAGAAGCCCTTCAGCTACAATACCCGAATAACGTGCTGTGGGGACTGGACTCAGGATCTACTGCCTCTACTTCATGA

Transcript

rna-pdam_00008996

CTGTTCGATTCTTTGTCCTTTCAAAGTACTCTGAGAGGAAAGAACAATTCCTTTGAACACGTGAAAAAAGGCTGTGAAGCAGAGTGAATATAActtatttgttatttcaagTAGGACtgaaaaattctccaaatggCAAATATTTTGGCTACCATAATCGCCATTGCAGCTGTCGTGGCAGCATATTTTTACTACAGACACGTAAGAAGCCATGATGGTCGTATTGTTGCAGTCTTGGAGGGTCTGAAGTctttggaaagagaaaatcCAGTGCACGGAAAACCTAAAGTAGCAACTAGTTTTGAAGCTAACGTGGATTATTTTGTAGATTCTCTGGAGTTGTTTGAAGCGTTGAACCTTGAACCGCCCGAGCAAGCCAAACCTCACGACATTTTGCGGACTGAGAAAgaatttttggaaacatttgcGTTCTTCTTCAATCATAGCGCAGCATCATCccgtTACATGACCGACAAAGATCTTTTTCGGAAGTTAGTCCTCAAATCCCAGGAAATTGAAGGAACTCGTAAACTAATTGGTGGCAGTGGATTACAAATTGGTAAACGCCTTGCCTTTGAAGGATGTCATGTTCTTTCAGCTGCTGATTCAAGTTCAGAATTACTGGAGATATTGCCAGAGAATTTAACAGCAGTGGGGAACATTGTAGAGGTTGATGATGTCCACTTGTTGTTGGAATATCCTGCACATTTTCCTTGGGGAAAGTATGAGTCCCAAAGAGCCAACAGACTAGTTTTACACAGCGATGAACACAATCCATATCTGAAGtcaatggaaaaatttcaggaGAAAGTAAAAGACTTTTCACCGGCAGTTATGGTTGTATCAGGACTCCATATGTTAGATAATTTTCCTGGCTTTAACCCTGGGGACAGTggtgaaatattgaaaaaactaTCGTCTTTTCTTGACACATTGAAAGTTCCAATTCACTTTGAGATGGCCCCATTCCATCAAGAAACGTTCTTTGATGAACTTTTGCAGTATGTTGTTCCTTATTCAAGAAGTATGGGTATGAATGAACAGGAACTGCCTAACTTGTGGAGCAAGCTGCTCTATGGAAACATAACAGTTGTTTCAAGTCAGAAACCAAGGGTTGCAAAAGTACTGGATCTCATGAGAGATGTGTACAAGACCTCAAAAAAGGATTatggaaaaagaaggaagagaCCACTGACAAGACTTCATGTCCACACATTGGCATTTCAAGCAATTCTAACCAGGAAAGGATCAAACTGGAAACACACCAAGGCAGCTGCAGCAAAGGCCTCTTTGACAGCAACACGTCATGTGTGTGGCTCAGAAGAAATTGATCCTGACAAATCTAAATTGTTTATGGATGAGTCATTTTCTAAAAGTATAGTTCCAGGCAGTCCAAAAGTTGAATTCAATGCCAATTTGCCTGTTTCTTGTTGGGATGAAGATGATTATGAAATATGTGTTGCTCCAGTGTTAGTTTGTACCCAAGTATTGCAGACAGGAGGTGGCGGAGACCATATTACTGCTGGTGGCCTGGGCGTTAAAGGTGCAATGACCGAGAAACAGCGACTTGAACGCTCTTCTCACTCTCCATTGAGTGGTGCTGATGGAAGAgtgaataaattgaaaaacttaaatCCGATCACGGGTGAATCTGAAGAACCCATATTGGTTAGCTTCGAAGACGTCAGTGCTGCCTCCTACAGGATTCGGAAAGGGGTTAAAAAAACACCATGTGAAagatCTAGTATGTCAGAGGCATTGAAGATGGACTTGTATTTCAAGAAGGACTATCTTCAGCACACAGGAAGcTTCAAAGAGAGAGGTGCCAGAAACACACTTCTGATGTTGTCTAAAGTAGGTCCAGCTTTTGCTTTAAAGACtgttgaagaagaaaacattgtaatttatttcagcTTAAGATCTATTGCATTAAAATGGTTTGCAAATGTCTCTAAACAGTCCAAAGAAATTTCCCTCAAGATGGCGAAGGCAAACGGATTAGCTTACATTAACGGGTATGATCATCCTCACATCCTATCAGGCCAAGGGACGCTGGGTTTAGAAATTGTAGAGGAAGTTCCCGACCTAGAGGCAGTTGTGATTCCTGTGGGCGGTGGAGGCCTATTGGCAGGTGTTGCTGTGGCAGTTAAGGGGTTACGCCCTGACGTGCAGATAATaGGTGTAGAGTCCGAGCGCTGCGCTAGCTTTCGGGCCGCAATGGATGCTGGTCATCCTGTCAAGATAGACGCCAATCAGTCTCAGACATTAGCTGATGGATTGTGTGTCTCCAAAGTTGGTTCAAACGCTTTTGCAACAGCCACAGGGCTAGTTGATAAAGTTATCAGTGTCAGcgagGATTTCATTGCCCTCGCCATACTACGTCTTATTGAGGAAGAGAAAGCAGTTGTTGAAGGGGCTGGAGTCACGGCCTTTGCTGCTGTTCTTGCTGGCATGTTACCTGAACTACAGGATCGCAAGGTTGTGATACCGCTCTGTGGAGGAAATATTGACTCTACTGTGCTTGGTCGCTGTATTGATCGAGGATTAGCTGCAGATGGAAGGCTTTGTAGGTTTATTGTTACTGTTAGTGATCGGCCAGGTGGAATCGCTGAACTAACGCGACTGTTGGCTTCTCTGGGAGCCAGcGTGAAAGATATTTTCCACGAGAGAGCATGGCTCGTGTCCAGTGTGTTCAATGTTCAGATCAAAGTAGTACTTGAAGTAAGAGACCGCGAACATGGACTTCAAGTTAAAGAAGCCCTTCAGCTACAATACCCGAATAACGTGCTGTGGGGACTGGACTCAGGATCTACTGCCTCTACTTCATGAATTGCCTGAAACTAATTACCTCTACACAATGAAGACCAAGAAATTCTGTGTgggtttgaattttattttctggttGTGTGTGAGTTGAAGAATGTTTTTCGattttaagaattgtatgaaaaATTTGGGATAGACAGAAACTTTGAAGTGTGAGGTTCTCCGATGCAAAGAAGTGTTTGGGAACTCAAAGGCAAAATGGGTCTGTTAAACTAAAGAGGATCGTTATATTCACCCTTGTGCGAGACCCTTATTATTAGCGCTTGGCATGAGTGTACTGCGAAAATATGGGACCTTGAACAACGCGCGCCGGCGAGAGGTCTGCGAGGGTTTTGGCCCTGATAGTACCAGACCCcggcaaacctctccccgactAAGGCCACTcatctcaaatcttcccgctGGCGGAGAAACGTAGCACTATTAATTAGGGCGTGCTCGCAAGCTACCTTTGTGTGGGATTCGCCATGTGGATGTTCTATTTTATAGATTTATCGAAGTTATGGGGCTGAGGAATATTGTAATACAAGGGTCtttatgaaaagtttttgtacatgtatttattttgactGCCAGTCAAATTTTGTGAGtgaaattgtgaatttttttttaccgggctgttttaaaaaggaaaaaaaaaactgaacacCTCATATAGTGGAGAACTGTCTCACTCTAAAGTATTTAACTGCTTATCGCTATTTTTATACAACCTGTACGTAGTCCAGAAAAGTcgtgatttttatttatttcgtaacatttttgctttatttgatAATATTAAGTCCCTAATGGGGAAATTAGCAATATGTTATTTAGTAGCGAAATATAGAAAATATCTTCAAATGCCTTAAAGGTTAGTCTCAACATTTCTATGTATGTAGGGTCAGTCAAAGGGACATTCGGGATTAGGGAGTAAATTTGTCGCTGATCGTAAAGGGACCGCACAAAATGTCAAGCTTATGTGGTCACTTTTAAGAGGCAAAGCCGTAGCGAGGGGAAACATATATTGATAGCTTTCAGAAGTCTTAATTGTGCACAAATGCATCATAATAAAGTTAAAGCCTTTATAACAAATTTGTCTCCCAAAGGTTATTCGTTTGAATGTGTTCATGCTTCTCAGTGTTATTACGATCATTGTCACGCTAATTCTATTTTAATCATGGTGAACCAACCAATGATAATTGGACAGGTAACAAACCTTCTCTCTCTCCCACCTCTGTTAAACGGGGATCATGTGAGTTCGTCGCTTAAACGAGTGGTCCATACTGAACAAAAGGTAGTTAATAGTGGTTTGGCTGGTTCAGAGAGGTTGTTCCTCCCAAGGGGTTTTGAAtataaaaatggaaaggagGACTGAACTCTACCCCTAGTTCAAGGCAGTATTGATCAGTTTTTGACAGGAATAATTTCCTGATCAACTCTCGGAGATTGTTCGTACCCTGGGCACGGTCACTGGCGGCAATTTGGAGAACAATCGGCTTCAACGGGTACTTCTCCTTCATTAGAATTATCGAAGCCAGCACAAGCTGCAACCAAAAAGAtctgcaggaaaaaaagaaagcgaagTACAATACATTGTCCCAATCTTGAACCACGACTCCGCTAGACACGGAAAGGACTTCGACCAAGGACAGTTTCGAAAGCGGGCTCTATTAAGCGAAGTCTTATGCCCCGTTAACACtaaagcttaaacatgtttaaatcttgttttacTAAACTGGTTTTACTAAACTACCTGTTCACACCGCGGGCGCGTGTAGCCAAACATGTTTAAAACCGTATTTAATAAAACTCCCTAAATGAGGTTGTTTAACTTTCGTGTTTAACTAAACACATAATTAGTCTTCTACGTTTAAAAGCTGATACTAGCCGCATAGAAGCCTGCTGATAATACACTAACAAACTTTTAATGTGCGCAGAATGCGAAATTCCACGAAAGCCGCGAAGATAATCACTCGACAACGATCCATTCCTGCCCAGTAATTCGAGCGATAATTTTTCTGTATCTTGTAATAGAGAGAGATACGGTACTGACTGATGCATTTGTCAATGAATGAAGTTTTGATCAGAGGATACTAGTTTGATGCGACCGCCgccaaaaaattggaaattgaaaattgaaaattttttgccaaCGTTTGGCTCGCGAAAAATTGGCAAATATTTAAACTCGCTCTCGTGCGACCCGGTCCTaagaaagtaataaaataaatacaccTTCTGTGACTTTCTGGCGGGGTGGTATGTCACCTTATAATTGCCTTGGCGCAAAGATTGTCATCCAACATGACATTATCATCCAAGATGCCGGCCGCCAGAAACccaagggtttttttttattacagtcgagcctgtattaagcggtcacccacG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WYJ1	L-threonine ammonia-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0356 PE=1 SV=1
Q74FW6	L-threonine ammonia-lyase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=tdcB PE=1 SV=1
P0AGF8	L-threonine dehydratase catabolic TdcB OS=Escherichia coli O157:H7 OX=83334 GN=tdcB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04587 all species →	ADP_PFK_GK	ADP-specific Phosphofructokinase/Glucokinase conserved region	Family	Interproscan
PF00291 all species →	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007666 all species →	Family	ADP-specific phosphofructokinase/glucokinase	Interproscan
IPR044561 all species →	Domain	L-threonine ammonia-lyase, ACT domain	Interproscan
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR002912 all species →	Domain	ACT domain	Interproscan
IPR001926 all species →	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21208 all species →	ADP-DEPENDENT GLUCOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0016773 all species →	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan
GO:0043843 all species →	Molecular Function	ADP-specific glucokinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01754	E4.3.1.19, ilvA, tdcB; threonine dehydratase	EC:4.3.1.19	Valine, leucine and isoleucine biosynthesis	ko00290	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.