Gene detail

Detailed information of RMX36779.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4234:84429...97042
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00008969

TGGAAGTGAAGCGAAGCAATTCAAGGTTCATCAAGTGGTTCAAGTAACTGCGTATTTTACTGTATTCTGGAGAATTTCAGCGATATTAGGTGATCAAGGAATTAGTGTAAAAACAATAGAATGGCAACAGCAAGGAGATCAGGGAGGCTCACTATCTTTGTGCGGTTTAACTCCAACACAAACATACCAGTCACCATTGATCCACAATGGACAGTTTTAAGGCTGAAACAAGAGATAGCTACCAATCAAGGAGTTGAGGCTTCAgaattaagaataatttttgctGGGCGAGAACTAAAAGATGACCTTCAACTGAAGGATGCTGAGATACCTCACCAAAGTGTTATTCATGCTGTCCGAGGTGGCCGCTGGTCAGCCAGACCAAGTAGACCTGGCCAAGTAATGCCACTGGCCAAACTTAGACTTTCAACTGTTGGTGAGGATGAAGAGGAAGTAGCAAGTTCAACAGATGGAGCATCTTCCAGGCGGCAGGCCCAGTATTTTGTTTACTGCAAGACTTGTAAACAGGTTACTGCTGGAAAGTTGAGGGTTTGTTGCTCACAATGCAAAGAAGGGGCAATTGTTCTTCAGCAGGATCCAAGTAGTTGGGAAGATGTCTTGAAATCAGGAAGAATCAGAGGATCATGTAAAAAAGCAGGCTGTGATGGAAACATAGTGGAGTTTTACTTTAAGTGTGCACAACATCCTGCTTCTGAGGGAGACAGATGTGTTGCACTACCTTTGATTCGAGCAAACACCAGAGAAATCCCTTGTTTGGCCTGTGCTGATGACAGGGAtcctgttttggtttttccttgTCCCGATGGACACGCTGTTTGTTTGGAGTGCTTTGCAATCTACTCCACAACAAAACTGAATGACAGGCAGTTTGTGCACAGCGACACATACGGATATACTCTGCCCTGCCCGGGAAGTTCAGGTGAGACCAAAATATGAATAAACttctgaaaatcaaaactttgatCGCTTGTCATTTGTAACCTGCCTAAGAGGTGAGGGAAGCACATACTTCAAGTCGTGGCTCCAACGTGGACTTTTCAATTTAGGTTCAAATGTGattttcacaattaaaatgaagaaagaaatggcAAGTAAAGCTAGAAAATGTTGCTAAACGTTGTTGGTTGAACGTAACTGTATAAACACAAGTTTCTTCGGGGCGTCTTGCAAGCAGGGGCTTAGCTCTGTTCGCAGGTTGTCTtctgaaagttaaaagaaaaggcCTGGTATTTCTTGCTCAATCTCGTTCTTTTCAACACAACTGAACGTAACCAAACTCTCATTACATGAGTAAAGGGGGCAATTCTCTGAAGAAACTGTAGAGAAAAGGTATAACAACATAACTAGGTTTTATCAGAAGCTTATAACTTAGTTTTACCAGTTCAGCGACTGACGAAGGGCTTACGCTTACACAATACCAAATTAACTTATTAGGTGATTACATGATTAGGCTTTCGCTTTAAATAGGTCTTAAACAATGTCTTTACAtacttttgcttttaaatctcAAGGTTAGAGATCAATcttttttgaacattttgccGATTTCCTTCAGCACATCCAGAGTAAATTGTTGATATCTACTCTCGGCTTCAAGTTGTTGCTGTagaattcttttaaataagTCCTCCTCCCTTTTGCGACTGTCTTCCAAAAACTCCCGCAAAATGGCGATCATGCTAAGATCTTCCTGACGGCTCTGAGCTGTTTTAAGCGGCCTGGGATTCTTCCTCGGTTTTTTCCGGGGAAGGGGTTCGGCGATGGTAGGTCTCTTCAAGCCCCGAACAGTCATTTCTTCCGAGTAGCTCTCGTCCTCTGATGATTCATCTTCGCTCGCTAAGCCCCTCGGTGCATGCACAGGTTCCACGCTGACTGCCGTCGCTGGAGTAGGCTGAGAAGGAACTGTCGGGTACACTTGTATGGGGATGGAGTGTTTCCCTGCTTGGCTAGCCGCGATCGGAGCATTTAAGGGCGTGGGCGGTGGGGCTGGCTTGATAGGGCGCAAATGTCTACCTGTAAACGTGTCCGAAGGAATAGCACTGGGAATGGTCATTGTGGAAGAAGCAGTAACGACGGTTTGAGAAGCAACGATGCCATTAGCAACTGTATGTTCAGCTGGTATGTTGATGCGCACCACCTCTTCTTCGCGATAGAGATCACTTTTGTTGTTGAGAATCTCTTTTATTTGGTCGTGGTAGGGAAATGAATGAGGTAATTGGTCCTTTGTTCGTTTGTATTCCGCGAGCAGGTTCTTTATCCGCACCTTGCACTGATTCCCTGTTCTGGGCCCCAGCGAGCAATGAGCTACGCGCCTGTTGAACTCCTTCGCAATCATGTTCCATTCTTCGTAATTTCGTTTCTTCCCTTTGATGATTCGATAGTTTGCTCTCCAAAGGCTTAGCAGGGCCATGGTTTCGGGATCTGTCCAACGGGAAGAATTAATAGTTCCCAGGGCTTCTTCGCCATTTCCCTCCTGGCTCTTTACCTGTTGACCGGGAAGAATGAGTTCTATTGTGGAAGTTTTTACCCCTTCCCCCACTGTCATCGTGTTTGTGTTAGAAACTGGAGCCATGGAAACCGCTGTAGGCTGCTGTGACATCGCTGACACGTGTGGTATCTGAAATTGCTATACGAACTATTTTGAATACTTTGTGTGCTTCTAATGCCAGTATGAGTGTCCTGCCCGTGCTCGTTTGAGATCAATTCTTGAGATGCTCAAATCGAAACTCGAATCGAAACTCGCTAGTCTTAGAGCGCTTGATCAAGCAATCTTACCAATTTGGCTTTCCCACCACACTGAATCTTCTTTTAgacaaaaatctaaatttttccttcGATTTCTCGTAGTACTTTAAGCTCTCAATGTAAAAAGGTATGTCACTTGCTTGTTAGTCGTGTCTTTTCCCCTTTCTACCTCCTCCAGCAGAGAAATGGTTGAAGCTCTTCGGCTGGACTCGATTTAATTCAAGCCACCCCGATGTCAGATGTGTAAACAATGATCTTTTGTTCGAAATGTGACGTAAGCGAGATCCGAGATGTGATTCGATTGTTCGCTTGATTAATCAATCTTGCAATGCATCTCatacattttctctttacaagGAATTTAAGACggctttttattatttcagaaaaGGGTTTATGATGGGATTTCAGATTTATGTCGCGGTTTATTTTACGCTGTTTGGCGCCTGATGTTTTTATGATATttcgaaatttgaaaaatggggaaaatcagagagaaagaaaagtttgaaatgtgtttgttgttcgggtttttttctaaattttattttgaaggcTTATACGTTTTACAACCCCTGTTACAGCATATtcgtaaaatgttttaatggAGGATATCCAAGAGCGCTTTGTgtatatctttctttttgttgggAGTATTTCCACATGCAAATCGCGCGCTTTCAGGAAAAATTCGCTAACTTTCAGTggataattattataaatcTCTTACAGTCTTCATTTTATCGTCTCATATTAAGGATTTGTGGAGTTCTGAAAGAATAATTTGCGCGATTTATTGGTGTTGCAATTGTTGACTTTCAAAACGAATTTTCTGCGTTTGTTTTTGAGAAGGTTCTCCTTACATTTTATGCCTTTTCTCCCACAGGTAGCTGTAACAGCGCACTAATTTCGGAGGCTCATCATTTCCGGGTGCTCGAGCCTGATCAGTACGACCGCTATCAGAGGTTTGGAGCCGAGGAGTATGTATTGAAAGAGGGTGGTGTGCTATGTCCAGGGCGTGGCTGCGGGATGGGCCTTTTGCCAGCACCAGGCATGCGCTGTATCAGGTGTGATTATTGCCAGTTTGAGTTCTGTAAAGAGTGCAAGGAGCCCTTTCAGCGAGGTCACTCGTGCAATCAGACGCAGTCAAATCCAACAACAAATGCCAGGGCTAGTAATTACCGAGTCAATTTAGAAAACGCGAGACGAGCGCGCTGGGAGGCTGAGGCGAGACAAGTGATTGAGCAGATCAGCAAGAAGTGCCCCGGATGTCAGACAAATATTGAGAAAAATGGTGGATGTAATCATATGACGTGTTCTCGCTGCCACTTTGAATGGTGCTGGGTTTGTTTAATTCGTTGGAATCCCGATTGTCAGGGCACTCACTGGTTTAGGGTGTGACCGCCATGTCACCCAATCTCGTTAGGATGAGATGCTTACATTACGAAGAATTTGCTAGTCTAGGAAAATCTTTGGAGATCTAGAGTAgaaggagaaatgaaaattaggtGTATTTTTTGCCAGTTATTTAACAGGTTAGAACTTCAATCGAAAAGTAGCAGTAGAATAAATGGGTAAGTTTTTTAGAAACTACTGTAGAAACGGAAAGGGAAACGTGTGTCGTCTGTCAGTGAAACGAACTGTGTGATATTCGTTCACACTAGTTCAAATCGCATTATAATTAGTGCAGACTAAAGTTGAGGAATGCATTGgaatagaaaaattgttttaagtaGTAAACTGCATGTAAGGTTTTAGAGTAACTTAAGATTTAGTTAAGATTCGCGAAGTGATTTATAAGAGACCGTAATATGTTCCAAGTAGACACATTTGCGTGGCAACCGTATGAGAAGAAAGTTCCTGTATTCGATGCTTCagttaacaaaatttgatacCGTTAACTTGCTTCATCTCAGCAGTGCTCATTGCttaattttaagatatttttaatcttcCAAAACTTTCTACTGTAACGTGGATAGCTGTAAGCATACCAGGTAAAACTTGATATATAATGTCCTACTTCGTAACTGATGAACTtgtatctaattttttttgttttcaaataaatcaattattttaacaaagcGTTCGTTTAGgaccaaaaaagttttttatccCGCATTATGTAGCAGTTAAGCGTTACACTGCGTTGTGTGATTTCCTACACTGTACCACACTTACTGTACTACTTTTGAAGTTCAAAAGTTTCCAGTGCATCAGTAGCATCCACGTTGTTTAAAAAGAACTACTTTAAAAAGTCCAGGAAGAGGATAAGACCTTACTTAATTATGCTCAGCAACTTTTGCCGGAGCAACGTTTGGCGTTTGGAGCAGCCATTTGTAGTTCTAGCAACGTCGAGCACATATCAAGcaccaaaaattaaactatttCATCCATAACTTCAATATCTTCGAATTTATTGAACGTTTAACAATCTTTTGAACACATGACTAGTCACTCGACGACGTTTCACAGACCTTTTGCTTTCCGTTAGACTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JK66	E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus OX=10116 GN=Prkn PE=1 SV=1
O60260	E3 ubiquitin-protein ligase parkin OS=Homo sapiens OX=9606 GN=PRKN PE=1 SV=2
E0VIU9	E3 ubiquitin-protein ligase parkin OS=Pediculus humanus subsp. corporis OX=121224 GN=park PE=1 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17976 all species →	zf-RING_12	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF17978 all species →	zf-RING_14	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041565 all species →	Domain	Parkin, RING/Ubox like zinc-binding domain	Interproscan
IPR047535 all species →	Domain	E3 ubiquitin-protein ligase parkin, RING finger, HC subclass	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR015496 all species →	Family	Ubiquilin	Interproscan
IPR041170 all species →	Domain	RING/Ubox-like zinc-binding domain	Interproscan
IPR003977 all species →	Family	E3 ubiquitin-protein ligase parkin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10677 all species →	UBIQUILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX36779.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.