Gene detail

Detailed information of RMX36870.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4231:215083...223997
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00000924

ATGTCAGCTGCAAATGCTACTTCAGGTTTTATATTGGGTGCAGGATTTTCCAGTCAATGTTTCCCCGTGAGAAGTTTGACACGATATAAACGACAGGACGATGATGGAGGAGCTTGGCTTGTTGCTTACCGAGCAGAACAAAGAAGGAGATTCAAGGCTGTAATTTGTGGTGGGGATCCCATCATACAAAGGCAGTCTTCAGTAACAAAGTTGCAAAGTGATGATACAGACTCTATAGAGGAGGAGAGACCACAGAAACTAGATGGTTTCTTTTTGATGAAACATTTTCATGTTGATGATCCGTCAGACTTATGCTCTGTGAAAATAAGTGGCCAAGATCTCAGAGAGGTGAATGAAAATGATTTTTTGTTATTTGACAATGTCATTCATGTGGATGCAGGAGATAACAATCTACCATTTGAGGCTTTCAGCAAGTTCTCAGCTCTCCAAGAGCTAGAGTTGCCCTTGAATAATATAAGTAACAACATCAGAATCCAACCAGCCATGTTTCCCAATCTGATTAATCTTGATCTATCGTACAATCGCTTAACTGGAGATGACATATTAGCACTGGGGCTTCTTGAAAGTCTTCGCACCTTACATTTGACAGGTAATGAAATAAAAAAGCTTCCTGTTGAAATGACAAGAACATATAGAACTATCACAGGAATGACACCTTCTGGTACTATTGAATCAGAGGACAAAAGGTTACGATTTCCTTCTCTGGAAAATTTATACCTGGATCACAATGAATTAACAGATCTGTCAACATTTGCAAGTCTGGCCGGACTAAAAAGACTTAAGTACCTGAACTTGGAGCACAATGAGATATCGTGTATTCCCCATCTACGGCTTTTGGGTGCTCGTGTAAATCACGGTGATAGTTCAAGGCACGAAAATGTACAGACTGTGAACAGCTCTTTACCTGACGTTCTTGAAGAAGACGTGAAAGATTTTCAAAAAGAAGATGAATCTTTTGAAAACAAGGAAGAAATAAAAAGGGATGGAGAAAAAGGCAATGCCAAAGAGCTCAATTTAGACGAGGTTGATGACATGTTAAGTCGAAATCTTGTGAGTGACGAACATGGAGAGGAAAAAAAACGACCAGAATTGAAACCAAGGTCCAGCACTTTGACTGAAGATCCTTCTCTGTTAGGTGACAGATACAATCCACCCTTGCCATTTGCTAGTTTACTTCACTTGAACCTGGCAAACAATCTCATCTTTGAAGAAGATGGCCTCTTAGCACTGATGGGTTGGCCATCCCTCAGAGAACTTGTAATATGGGGCAATCCGCTGACAACTGCATTCAAAGGAGATCCCCCTGTTCTTTCACTTCAACTTGGACGATTGAAAGGAGTGAGGATTTTCAGACAAAAGCCTCCGAAGAGACCAAAGCCAATTGTGAACTTAGCAAACAATCAAAGAAAAGTTAAAGATACACTTCCCCCGATGCCCAAGAAGCAAAACCTGGCGATGCTAGAAGCTCCTCCCGAGCCAAAATCAACCGCACATGTCGGCCCACCATACAAGACATTGCCACCAATTGGATCAGCCCCTCCCACTGGACGGCAGCGTGATACTGCCACCCCGAGAAAACTCTCTACCGCGCCTGGCCTCGCTGATACAACACCCCGAGGCGACCGTCCCTCTTTCAGCCGGACTAACACTACGCCTCTCGAGTTTCCCGAGTCAGCGGCTTACCAGTCCGGTCACACTACAAGACAGACAATGAAGACAGAGGGAGACGCTTCTGCCAGTGAAAGTTTGGAAACTGCTGATGGGCGACATCAACCTCGAGCAGAAAAGCATCTCAATTCTGAGGACGGATTTTTTATGACTCAAATCGATGAACAAGAAGATGCACAGAACGTTGAAGCCCCCGTGCGAAAGGTAAAGGAAGACAGAGAGAAAGAGCGACCCTTTAGCGTGGAAACAAAGTACAAAGGTTACGAGGATCTGTTAGATGTTGATGAAGATGACCCCGATGTTATAGTGCCAAAGGATCTTCAGGGAAGTGTACGAGCTTTAAACTACGCCTTGGCTCATCCTTTGATCTTCAGTGAACCTCATGGAACTTACAAAGAAAAGAGGGTTAAGAAGCCTCAAACTGTGTCAACATCAACGGGGACGAAGTCTCGGCAAAGCAAAGTAGAGGAACTCGGGGGAATTTTAGACAAGATGCGAGTCCAGTCCAAGACGAAAGAGTCAAACCTAGAAACTGCTCTCCAAGATTTGAAGAAGGATCCAAAGCTTAAACAAGAATATCGTGAGGCTAAAAAGCTTTTGAATGAGGTCCAAACGAAGTACAACGAAGTTCGAGTAGCTTCGCTGAAACCGACGTCCACTGCCCTAGAGCTCTTCGGAACACGACCCGAAGAACGAACGAAAGAAAAAAAAACTCGAACCTTCGCTACTCCTCAAGCAGGAGTAGAAACTCTGGGAAGCAACAAGAATATCGCAAAGGAACTCAAACGATTCAAAGAGAAAATAGACAGTCGATTATGA

Transcript

rna-pdam_00000924

AGCGTTACCATAGTCACCAAAGTGTTTCGTCCCTCAATATGGCGGCCTCCATTTTAAAAGCCAGACCTCTGCCTTAAACCTCCTGATAAACCAAGATCTTTTCCATCAAAACGACATTTCAGCAACTTTTAATTCACGTCAAGGCAATTACAATGTCAGCTGCAAATGCTACTTCAGGTTTTATATTGGGTGCAGGATTTTCCAGTCAATGTTTCCCCGTGAGAAGTTTGACACGATATAAACGACAGGACGATGATGGAGGAGCTTGGCTTGTTGCTTACCGAGCAGAACAAAGAAGGAGATTCAAGGCTGTAATTTGTGGTGGGGATCCCATCATACAAAGGCAGTCTTCAGTAACAAAGTTGCAAAGTGATGATACAGACTCTATAGAGGAGGAGAGACCACAGAAACTAGATGGTTTCTTTTTGatgaaacattttcatgttgATGATCCGTCAGACTTATGCTCTGTGAAAATAAGTGGCCAAGATCTCAGAGAGgtgaatgaaaatgattttttgttatttgacaATGTCATTCATGTGGATGCAGGAGATAACAATCTACCATTTGaGGCTTTCAGCAAGTTCTCAGCTCTCCAAGAGCTAGAGTTGCCCTTGAATAATATAAGTAACAACATCAGAATCCAACCAGCCATGTTTCCCAATCTGATTAATCTTGATCTATCGTACAATCGCTTAACTGGAGATGACATATTAGCACTGGGGCTTCTTGAAAGTCTTCGCACCTTACATTTGACAGgtaatgaaataaaaaagcttCCTGTTGAAATGACAAGAACATATAGAACTATCACAGGAATGACACCTTCTGGTACTATTGAATCAGAGGACAAAAGGTTACGATTTCCTTCTCTGGAAAATTTATACCTGGATCACAATGAATTAACAGATCTGTCAACATTTGCAAGTCTGGCCGGACTAAAAAGACTTAAGTACCTGAACTTGGAGCACAATGAGATATCGTGTATTCCCCATCTACGGCTTTTGGGTGCTCGTGTAAATCACGGTGATAGTTCAAGGCACGAAAATGTACAGACTGTGAACAGCTCTTTACCTGACGTTCTTGAAGAAGAcgtgaaagattttcaaaaagaagatgaatcttttgaaaacaaggaagaaataaaaagggaTGGAGAAAAAGGCAATGCCAAAGAGCTCAATTTAGACGAGGTTGATGACATGTTAAGTCGAAATCTTGTGAGTGACGAAcatggagaggaaaaaaaacgaccAGAATTGAAACCAAGGTCCAGCACTTTGACTGAAGATCCTTCTCTGTTAGGTGACAGATACAATCCACCCTTGCCATTTGCTAGTTTACTTCACTTGAACCTGGCAAACAATCTCATCTTTGAAGAAGATGGCCTCTTAGCACTGATGGGTTGGCCATCCCTCAGAGAACTTGTAATATGGGGCAATCCGCTGACAACTGCATTCAAAGGAGATCCCCCTGTTCTTTCACTTCAACTTGGACGATTGAAAGGAGTGAGGATTTTCAGACAAAAGCCTCCGAAGAGACCAAAGCCAATTGTGAACTTAGcaaacaatcaaagaaaaGTTAAAGATACACTTCCCCCGATGCCCAAGAAGCAAAACCTGGCGATGCTAGAAGCTCCTCCCGAGCCAAAATCAACCGCACATGTCGGCCCACCATACAAGACATTGCCACCAATTGGATCAGCCCCTCCCACTGGACGGCAGCGTGATACTGCCACCCCGAGAAAACTCTCTACCGCGCCTGGCCTCGCTGATACAACACCCCGAGGCGACCGTCCCTCTTTCAGCCGGACTAACACTACGCCTCTCGAGTTTCCCGAGTCAGCGGCTTACCAGTCCGGTCACACTACAAGACAGACAATGAAGACAGAGGGAGACGCTTCTGCCAGTGAAAGTTTGGAAACTGCTGATGGGCGACATCAACCTCGAGCAGAAAAGCATCTCAATTCTGAGGACGGATTTTTTATGACTCAAATCGATGAACAAGAAGATGCACAGAACGTTGAAGCCCCCGTGCGAAAGGTAAAGGAAGACAGAGAGAAAGAGCGACCCTTTAGCGTGGAAACAAAGTACAAAGGTTACGAGGATCTGTTAGATGTTGATGAAGATGACCCCGATGTTATAGTGCCAAAGGATCTTCAGGGAAGTGTACGAGCTTTAAACTACGCCTTGGCTCATCCTTTGATCTTCAGTGAACCTCATGGAacttacaaagaaaagagGGTTAAGAAGCCTCAAACTGTGTCAACATCAACGGGGACGAAGTCTCGGCAAAGCAAAGTAGAGGAACTCGGGGGAATTTTAGACAAGATGCGAGTCCAGTCCAAGACGAAAGAGTCAAACCTAGAAACTGCTCTCCAAGATTTGAAGAAGGATCCAAAGCTTAAACAAGAATATCGTGAGgctaaaaagcttttgaatgaGGTCCAAACGAAGTACAACGAAGTTCGAGTAGCTTCGCTGAAACCGACGTCCACTGCCCTAGAGCTCTTCGGAACACGACCCGAAGAAcgaacgaaagaaaaaaaaactcgaacCTTCGCTACTCCTCAAGCAGGAGTAGAAACTCTGGGAAGCAACAAGAATATCGCAAAGGAACTCAAACgattcaaagagaaaatagacAGTCGATTATGa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22710 all species →	X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX36870.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.