Gene detail

Detailed information of RMX36905.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4231:415553...428360
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00000947

ATGGGAAAAAGTGAAGTCGAAAAAGCACCTAGTGCACCCAAAACCAAGAGAGAAAAAATATATTCCCCTACTAAGGTTATAATCCGCCGTCTCCCTCCATCGTTTACCGAAGAGCAATTGAAAGAAGAACTTGGAGAGTTTCCTGAGCATGACTTTTTCTATTTTGTTGGCAGTAACATGAGCTTTGGTCCTGTTTCTTTTTCAAGGGCATACATCAACTTTAAAAATAGAGAGGATATAATCAAGTTTAGAGATCAATTTGATGGGTACTGCTTTGTGGACAGCAGAGGTGTAGAATATCCTGCTGTTGTGGAATATGCTCCTTACCAAGCTGTACCTAAAAAGAAAGTCAAAAAAGATCCAAAGATTGGAACTATTTTGGAAGATCCTGACTACAAGGTTTTTCTGGAATCACTGAACAAAGATGAGGAGCCTCCCCCAAGTGTTGAGGCTCATTTGGAGGAGATTGAAGCTAAGAAATCTTCATCCAGTGCAGCAAAAAAGAGTACTCCATTACTGGAGTACTTGAAGATGAAGAGAAGTCCTCGTGGAAGGCCTTTGTCATCTCGGAATATTTCTGACAAGAAGAGAAGGCCCGACCGAGAGGAACTACCGAAGTCGCCGAAGAAATCGTCGAATTTGTCTTCCAGCAAAGATTCTGGTGGTAAAAGTGGCAGCCATCCGCCAAAGGAGGAAAAGCCTAAAGACGAGAAAGATGCAAATGCCAAAGAAGGAACTCGAAAAAAAGATGAGCAGGATAGAAAAGGCAGCAAAGACACAAAGGCATCATTGTCTTCCAAAGAGAAGTCTGATTCAAAATCTCCTGCGAAAGGAAAAGAGGAAAAGGGTCGACCTGAATCAGGAAGATTCGGAAGGAGGTCCGACAGCCGACGCTCCGACGAAAGACGACCAGAAGACAGACGAAATAGCAATCGTAGAGACCGAAGAGATACTGGTGATAGTTCCGGAAGCGATCGAGTACGTGACGATCGCTCCCGAAAAGAAAGCGGGAGTGACGGAAGCGGGCGACGCGATCGAAGACCAGAGAGTCGACGGGATTCGCGACCATCTCGAGAACCCGAAGATAAGCCGAAAGGAAGAGAGCCCTTACCTAAAGCAAGCGATGCTGATAAGGGCGGGAAAAGTGGTGGGGAGAAAGAGAAGGAACAGATGAAAACCACATCAAAGGCAAATGAAACGGAGAAAAACAGAAAGGAGGAAGACAGCTCAGTAGTTGGTGATGCAAAACCCTCCAGAGAAGAAGAGAAGGGAGCGGCCAAAGACGAGAAAGTACGAAGCGAAGAGGAGACGAGTAGGCAAAGACGATTACGAAACAAGGATCGTCCTGATCGAGCCATTTATCAGCCAAGATCAGCTTCACGAGGAGCAGGCTCTAAAAGTGACGCTTCTAAAGGAACTGAATCATCAGAAAAAGAAAGAGGCAAGGACTCCAGGACCAAGGAGAAGAATCGTGAAGCAGAACGTGAAAGTAGAAAGAACCGTGATGATAAACCACGCGATCGATATCGTGACGATCGAAGAGAGCGTGACAGAGACCGTGACAGAGATCGACGAAGCGATCGTGATAGAGATCGTGAACGTGATCGTCCGCGAGAAAAGGCGCGTGAGCGTGACCAGGACCAAACTGAATTCACGAAAGAAGAACGAGACGAGCGGAAAAAAGCTGAAGCCAACGAAAGCGGGTATACGGCTTCTTTATTTGGGAAAGGGGAGTCGATCGAATATGTTAATTGGGGACTTCAGTGGTTATCATGGATGCACCCTAAGGATGAAGAATCAGAAAAATTATTGGAAATTTGGAATGAAAAGATAGCCAACATCCCTGTACGTTTTTATAAACCAAAAACCCTTGGCAAAAAAACTACTGGTGTGGTTTATTTTCATGGCGGTGGATTTACTATTGGAAGTGTTGATCAGTTTCATCTATTCACCCTGCTGTTAGCTAAAAAAGCAAATGTTGTGCTGGTTTCTGTTGAATACAGATTAGCACCCAAACACACTTTCCCTGCCCAGTTCCATGACAGTTATGCTGTTGTTAACACCCTGCTGGCCACTGGAGCGAAATATGGTATTGATACAAACCGTATTATTGTTGCTGGAGACAGTGCTGGTGGTAATCTAGCAGCTGCAGTTGCTCTCAAGCTTCGAGATGAGGACAAACATCTGGCAGCTGAGATTCTCATCTACCCTGCACTTCAGTTCATGGACTTTTCACTTCCCTCGTATCAAAACCATGGCTCTCGACTCTTGTCATTGGAACAATTGGCAGGTTACTGGTCATATTACATGACAGGATCAGCTGACAAGGTCTCATCCTTTTTGGCGAACAATCATTCCAGGCATCTTCGCAACACAAAGTACTCCTCTTACATTGGGGTTGGTGAAAAGGGACAACAAAATCAACAGAAGAAGCCATTACGTGGAATTCCAGTAATTGTTTTAGATAGTCTGGTGGACTATAGAGCATCACCTTTAATGGCAAATAGTTTAAAGGGGCTTCCCAAGACGTTAATCATTACATGTGAATTTGACATCTTAAAGGATGATGGTCTGTTGTACAGGGCTCGTTTGTTGGATGCTGGTGTCAAAGTGACCCATTTAAACTACATGAGCTACCATGCCTTTTTGGCAATTCAAGCATCACCTTACTTTGTAGCTGAGGAGTTTAATCAGGCATTGAGAGATATAGTTGACTTTGTGAAAGGAGTGTAA

Transcript

rna-pdam_00000947

TGAGCACCgttcaaaacaaagatggcAACGGACCGGATGATGAAGCAGCACTGAATTCTAACGTTTGTGTGGAAAATGGGAAAAAGTGAAGTCGAAAAAGCACCTAGTGCACCCAAAaccaagagagaaaaaatatattcccCTACTAAGgTTATAATCCGCCGTCTCCCTCCATCGTTTACCGAAGAGCAATTGAAAGAAGAACTTGGAGAGTTTCCTGAGCATgactttttctattttgttggCAGTAACATGAGCTTTGgtcctgtttctttttcaagggCATAcatcaactttaaaaatagaGAGGATATAATCAAGTTTAGAGATCAATTTGATGGGTACTGCTTTGTGGACAGCAGAGGTGTAGAATATCCTGCTGTTGTGGAATATGCTCCTTACCAAGCTGTACCtaaaaagaaagtcaaaaaAGATCCAAAGATTGGAACTATTTTGGAAGATCCTGACTACAAGGTTTTTCTGGAATCACTGAACAAAGATGAGGAGCCTCCCCCAAGTGTTGAGGCTCATTTGGAGGAGATTGAAGCTAAGAAATCTTCATCCAGTGCAGCAAAAAAGAGTACTCCATTACTGGAGTACTTGAAGATGAAGAGAAGTCCTCGTGGAAGGCCTTTGTCATCTCGGAATATTTCTGACAAGAAGAGAAGGCCCGACCGAGAGGAACTACCGAAGTCGCCGAAGAAATCGTCGAATTTGTCTTCCAGCAAAGATTCTGGTGGTAAAAGTGGCAGCCATCCGCCAAAGGAGGAAAAGCCTAAAGACGAGAAAGATGCAAATGCCAAAGAAGGAACTCGAAAAAAAGATGAGCAGGATAGAAAAGGCAGCAAAGACACAAAGgCATCATTGTCTTCCAAAGAGAAGTCTGATTCAAAATCTCCTGCgaaaggaaaagaggaaaagGGTCGACCTGAATCAGGAAGATTCGGAAGGAGGTCCGACAGCCGACGCTCCGACGAAAGACGACCAGAAGACAGACGAAATAGCAATCGTAGAGACCGAAGAGATACTGGTGATAGTTCCGGAAGCGATCGAGTACGTGACGATCGCTCCCGAAAAGAAAGCGGGAGTGACGGAAGCGGGCGACGCGATCGAAGACCAGAGAGTCGACGGGATTCGCGACCATCTCGAGAACCCGAAGATAAGCCGAAAGGAAGAGAGCCCTTACCTAAAGCAAGCGATGCTGATAAGGGCGGGAAAAGTGGTGGGGAGAAAGAGAAGGAACAGATGAAAACCACATCAAAGGCAAATGAAACggagaaaaacagaaaggaGGAAGACAGCTCAGTAGTTGGTGATGCAAAACCCTCCAGAGAAGAAGAGAAGGGAGCGGCCAAAGACGAGAAAGTACGAAGCGAAGAGGAGACGAGTAGGCAAAGACGATTACGAAACAAGGATCGTCCTGATCGAGCCATTTATCAGCCAAGATCAGCTTCACGAGGAGCAGGCTCTAAAAGTGACGCTTCTAAAGGAACTGAATCATCAGaaaaagaaagaggcaAGGACTCCAGGACCAAGGAGAAGAATCGTGAAGCAGAACGTGAAAGTAGAAAGAACCGTGATGATAAACCACGCGATCGATATCGTGACGATCGAAGAGAGCGTGACAGAGACCGTGACAGAGATCGACGAAGCGATCGTGATAGAGATCGTGAACGTGATCGTCCGCGAGAAAAGGCGCGTGAGCGTGACCAGGACCAAACTGAATTCACGAAAGAAGAACGAGACGAGCGGAAAAAAGCTGAAGCCAACGAAAGCGGGTATACGGCTTCTTTATTTGGGAAAGGGGAGTCGATCGAATATGTTAATTGGGGACTTCAGTGGTTATCATGGATGCACCCTAAGGATGAAgaatcagaaaaattattggaaaTTTGGAATGAAAAGATAGCCAACATCCCTGTACGTTTTTATAAACCAAAAACCCTTGGCAAAAAAACTACTGGTGTGGTTTATTTTCATGGCGGTGGATTTACTATTGGAAGTGTTGATCAGTTTCATCTATTCACCCTGCTGTTAGctaaaaaagcaaatgttGTGCTGGTTTCTGTTGAATACAGATTAGCACCCAAACACACTTTCCCTGCCCAGTTCCATGACAGTTATGCTGTTGTTAACACCCTGCTGGCCACTGGAGCGAAATATGGTATTGATACAAACCGTATTATTGTTGCTGGAGACAGTGCTGGTGGTAATCTAGCAGCTGCAGTTGCTCTCAAGCTTCGAGATGAGGACAAACATCTGGCAGCTGAGATTCTCATCTACCCTGCACTTCAGTTCATGGACTTTTCACTTCCCTCGTATCAAAACCATGGCTCTCGACTCTTGTCATTGGAACAATTGGCAGGTTACTGGTCATATTACATGACAGGATCAGCTGACAAGGTCTCATCCTTTTTGGCGAACAATCATTCCAGGCATCTTCGCAACACAAAGTACTCCTCTTACATTGGGGTTGGTGAAAAGGgacaacaaaatcaacagaagaAGCCATTACGTGGAATTCCAGTAATTGTTTTAGATAGTCTGGTGGACTATAGAGCATCACCTTTAATGGCAAATAGTTTAAAGGGGCTTCCCAAGACGTTAATCATTACATGTGAATTTGACATCTTAAAGGATGATGGTCTGTTGTACAGGGCTCGTTTGTTGGATGCTGGTGTCAAAGTGACCCATTTAAACTACATGAGCTACCATGCCTTTTTGGCAATTCAAGCATCACCTTACTTTGTAGCTGAGGAGTTTAATCAGGCATTGAGAGATATAGTTGACTTTGTGAAAGGAGTGTAAAAAAGTCTAAAAATATGCATAAATTTGATTAGCAAAACATTTCAGCCATTTTTGAAGAAGACTTTGGTTATGAGAAATGGTTGTTGTAAATGTACGCTTCTAAAAATCTCCGGACTGCTTAGTTATGCTGACATACGTACCATAGAACTTTCAAGAACATTTCATCACGTCACGCAGTCATTACGTAATAGTACTGAAATAGTTCTTTTGTAAGCCTCTGGAATGTTCCAGAACACTTTGTGAATGTATATAAAGACTCGGTTaggtagtagtagtagtatttattgttgttgtcagGGGTGACCGACTGTTTAGAAAGCTATGAGAGAGAGTAACAGTAGAAGATTGCTAATTTCAAGAAACGTTGTGGAAAACCTTGAGTTCGGCTCAGGGGTGAGCTAAGATATTGACTGTAGTGGGCTTAAGTAAGTTTATCGAGCATAAGTACTGTACTGCCTTCAGTAGTCGCTTGTTATTAAGAATATCAAACACTTGTTTATTGAAGTTGTTAAGTTTGTAGGAttgtagtgtttttctgtCGGTTAGATTATATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7M370	Arylacetamide deacetylase OS=Oryctolagus cuniculus OX=9986 GN=AADAC PE=1 SV=1
Q0P5B7	Arylacetamide deacetylase OS=Bos taurus OX=9913 GN=AADAC PE=2 SV=1
P22760	Arylacetamide deacetylase OS=Homo sapiens OX=9606 GN=AADAC PE=1 SV=5

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07859 all species →	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan
PF03467 all species →	Smg4_UPF3	Smg-4/UPF3 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR033140 all species →	Active_site	Lipase, GDXG, putative serine active site	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013094 all species →	Domain	Alpha/beta hydrolase fold-3	Interproscan
IPR005120 all species →	Domain	UPF3 domain	Interproscan
IPR039722 all species →	Family	Nonsense-mediated mRNA decay protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13112 all species →	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX36905.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.