Gene detail

Detailed information of RMX37128.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4206:107391...117010
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00015760

ATGTCTGTCAGTAGTCTTCTGGAAAGCTTTGGTACCACCTTCGATCCTCTTCAACCATTGCTGTTCAAAGATTTTGGCGACGATTCAGAAGATTTGAAATCAAAGAGTAAAGAAGCAACCGACGACTTATGGAAGAATTTTTCATTTCCGCCGACGCCACCGATCTCTCCGGCTTGCTCGCCCCCGCACGCGGCAACCGAAGAGGCAAGAGAGCAGCCAGTTTGCTTCGGCGTGGCAGATGAGGCATTTTCTCTGGACGAAGAATGCTCGCTGTACTTCCAAGCCGGTGACCTGAAAGATATATTGATTAAAGATTGCATGTGGAACGGCGCTGCTTTCGATAAGAATGCGGACAGGAAGCAGCATCGATCGAATTCAAAAACGGATCGAGTTCGTTTGCTGTGCCAGACACCGCCACTGAGTGAATCTGCGGCAAGGATTTTGAGTGTGGATCCCTCAGAAATCTTTCCTTTTCCTCTGAGTGCAAGCCCTGGAAGCGAACTGCGAGAAAACATCGATGAGCAATCGGATTCCGAAGAAGAGGAAGTCGAAATTGATGTGGTTACTATAGAAAATTCAAGCAAACGAGAGCAGGAAGCCGATGAAGTTATTGAAACTGAAAGTGTGGAAATTTGCACTAGAATCGAAGAACCGGTCCCAAGTGAAAGCTGCTCTGAAGTATCAAGTTCAGAATTTCGAACGGAAGACCCAGAGGAAGACGAGAAAACTGAATATGTGGGCAAGATAAGAACACGTCGGCATAGAAAAGTGTTATCCAGCGACGGATTGAATTACCGCGAGGGAAAGAAACTTGTTAAGAATATCAGCAGCTCTGGAGAAAGCGATGAGTCTGAGAACGACAGTGAATTCACACGAGCGACACATAACGTATTGGAGCGAAAGAGAAGGAACGATTTAAAAATGAAGTTTCAAAAATTACGAGACTGCGTTCCGGAATTGAAGGACAATGACCGCGCACCCAAAGTCTCCATTTTGCGGAAGTCTTGGGAGTATATAAGTCACATCAAACAAGAAGAAAGTAAACTCCTGACCGAGCTGGAAGAACAAAAGAAAGTTAACGCTATACTCTGTTGCGAGATGTTTTTTGACGAGAGACTACGTGGACCTCAACCAATAGATTCCTCTGCTCATCAAGATCTCATCGCCGCAGAAGACCTTTACAGCCCGGCTTTTCCGATCGACGACTTGTGGAAGAAATTCACGCTTCCAACGCCACCCTATTCTCCGGAGAACTACTTTCCCCAGACTAAGCGCAACTTTGTTATTCCACCAAGAAGGAATGGCCTTCAAGTCGTTCCCGAACCGGAAGATCTGTCGTCGGACCTACCCTTGGTTTTGTCCGACGCAGAGATGGAACGCCTGACCTGTAGCACAATAGATGACGAATATATTTGGCCGGCTGGTGAGAACGACTTCGATAGAGTTGAATCGCAGAGGTTTCAGGGGAATCGAGTGGTTCATTCGGCGGCATGCGTCAACGAACCAAGCGCTGAAATGGCGACTGAACATCAAATGATGCGAGATTTGTCTTCATTTGTCACTGCGATTCCAAGTCAAGATTCCGCGCTCGGTCTACCGCAGGTTGAGAGATGGCACTCGCAGTTCTCTGTGGAAAATCCGGCATTGAGACTTAATCAACCCCCAAGCGAGGAATTTGTAACTCATCGGCTCGACTGCACGGTATCGAAGAAACCGCGCAAATCTCGAAGATCAAGTCGCCAAGATTCACCGCCAATGGAGGGCGATGACTCTGAAGACAACGAAACAAGCAGAGCAACTCATAATGTCTTAGAACGACAGAGAAGGGAGGATTTAAAATGTCGTTTTCAATTTCTTAGGGACAGCATACCAGAGCTCGAAGATAATGATAGAGCATCTAAAGTTTTAATCTTAAAAAAAGCGCGGGAATACGTACATCAGTTATTCTTAGAAGAGGAACGTTTACTTGCTGATAAAGAGTTAGAGCGGCAGAGGAGACTGATCCTCCTTGACCGCCTTACTTGTTTACGGCAAGGTTATGGTGTAATGTAG

Transcript

rna-pdam_00015760

ATGTCTGTCAGTAGTCTTCTGGAAAGCTTTGGTACCACCTTCGATCCTCTTCAACCATTGCTGTTCAAAGATTTTGGCGACGATTCAGaagatttgaaatcaaagagtAAAGAAGCAACCGACGACTTATGgaagaatttttcatttccgcCGACGCCACCGATCTCTCCGGCTTGCTCGCCCCCGCACGCGGCAACCGAAGAGGCAAGAGAGCAGCCAGTTTGCTTCGGCGTGGCAGATGAGGCATTTTCTCTGGACGAAGAATGCTCGCTGTACTTCCAAGCCGGTGACCTGAAAGATATATTGATTAAAGATTGCATGTGGAACGGCGCTGCTTTCGATAAGAATGCGGACAGGAAGCAGCATCGATCGAATTCAAAAACGGATCGAGTTCGTTTGCTGTGCCAGACACCGCCACTGAGTGAATCTGCGGCAAGGATTTTGAGTGTGGATCCCTCAgaaatctttccttttcctctgaGTGCAAGCCCTGGAAGCGAACTGCGAGAAAACATCGATGAGCAATCGGATTCCGAAGAAGAGGAAGTCGAAATTGATGTGGTTACTATAGAAAATTCAAGCAAACGAGAGCAGGAAGCCGATGAAGTTATTGAAACTGAAAGTGTGGAAATTTGCACTAGAATCGAAGAACCGGTCCCAAGTGAAAGCTGCTCTGAAGTATCAAGTTCAGAATTTCGAACGGAAGACCCAGAGGAAGACGAGAAAACTGAATATGTGGGCAAGATAAGAACACGTCGGCATAGAAAAGTGTTATCCAGCGACGGATTGAATTACCGCGAGGGAAAGAAACTTGTTAAGAATATCAGCAGCTCTGGAGAAAGCGATGAGTCTGAGAACGACAGTGAATTCACACGAGCGACACATAACGTATTGGAGCGAAAGAGAAGGAacgatttaaaaatgaagtttcaaaaattacGAGACTGCGTTCCGGAATTGAAGGACAATGACCGCGCACCCAAAGTCTCCATTTTGCGGAAGTCTTGGGAGTATATAAGTCACATCAAACAAGAAGAAAGTAAACTCCTGACCGAGCtggaagaacaaaagaaagttaacgCTATACTCTGTTGCGAGATGTTTTTTGACGAGAGACTACGTGGACCTCAACCAATAGATTCCTCTGCTCATCAAGATCTCATCGCCGCAGAAGACCTTTACAGCCCGGCTTTTCCGATCGACGACTTGTGGAAGAAATTCACGCTTCCAACGCCACCCTATTCTCCGGAGAACTACTTTCCCCAGACTAAGCGCAACTTTGTTATTCCACCAAGAAGGAATGGCCTTCAAGTCGTTCCCGAACCGGAAGATCTGTCGTCGGACCTACCCTTGGTTTTGTCCGACGCAGAGATGGAACGCCTGACCTGTAGCACAATAGATGACGAATATATTTGGCCGGCTGGTGAGAACGACTTCGATAGAGTTGAATCGCAGAGGTTTCAGGGGAATCGAGTGGTTCATTCGGCGGCATGCGTCAACGAACCAAGCGCTGAAATGGCGACTGAACATCAAATGATGCGAGATTTGTCTTCATTTGTCACTGCGATTCCAAGTCAAGATTCCGCGCTCGGTCTACCGCAGGTTGAGAGATGGCACTCGCAGTTCTCTGTGGAAAATCCGGCATTGAGACTTAATCAACCCCCAAGCGAGGAATTTGTAACTCATCGGCTCGACTGCACGGTATCGAAGAAACCGCGCAAATCTCGAAGATCAAGTCGCCAAGATTCACCGCCAATGGAGGGCGATGACTCTGAAGACAACGAAACAAGCAGAGCAACTCATAATGTCTTAGAACGACAGAGAAGGGAGGATTTAAAATGtcgttttcaatttcttaGGGACAGCATACCAGAGCTCGAAGATAATGATAGAGCATCTAAAGttttaatcttaaaaaaagcGCGGGAATACGTACATCAGTTATTCTTAGAAGAGGAACGTTTACTTGCTGATAAAGAGTTAGAGCGGCAGAGGAGACTGATCCTCCTTGACCGCCTTACTTGTTTACGGCAAGGTTATGGTGTAATGTAGAGGATTTCAAAGTTAACTTCTGTTAACTGTAAACTTTAggccacagttttttttaagaagaattATTCTACAAGtcgagggaaaaaaaaatcgcattTTGTTCATTCATGAAATAGGATTTTTGTATGCTACAGTTTAATGTTGCCATTTGCCGTGCAACGGATGTCAAAAGTTAATACTCAGATTAATTCGCGTTTTATAACTACAGAATTAACTTGattgatataaatatattatataGCCATTCACAGCCGAGGTATTAAATTATTAAGCAGGAGTAGAATTCTGGGGTTAAAATATCTCTAGTCTTTGATACTCTTGCAGAGGCAAATCTAAACTCGAACATTATAACATTTCAATCGATAAAACGGTTTCAAACTTCACCTCtaagtcaatttttaaattaaattgtgtaactttgttttccatttttgctAGTCAACGTATTactcaaagtaatttttcacaTAAAAATTTCCAGTAAATTTAAGAGACTCTGATTTTACAGCAAAGTCATCTTAGAAACTGAACTTGATATCtcaagatattttgttttcaagtaaaatCTGCAACGAgtataaactgaaaaaaaaatacaaacagaacACAAACAGTCGTTCGTTTTTCAAGCAACATATCCTAACATGGAAAATTCAGGAACGGCGCGGATCATAAACATAAGTTTCTCCGTCAATATCTGAAGTTTAGCCATGTTAAAACTTCTGTGAGAAAGCTTTCGTTTTTGCTCGCAATCAAATGCCACgtaaattcagttttgagaAGTTCTAAAAGAGTTTCTCCATATTTGTACAAAGGAATTACGACAAACTATTGCTGTGAACAGCGAAAAATGTatgaagatattttttgtcGAAGTCAGTGGTGGTTAGTTTCATGTCTCACGGAGGTTTCAGGTTATTCAGCTTAACTAGCATGTAATCTGtacatgaaacaatttttgtaatgaaaacgTTTATgccttgaaaaataaataggcTTGGAAATGTGTAGACTTCTGTTGGGAATTCTTTAAGCCAGAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90342	Transcriptional regulator Myc-2 OS=Cyprinus carpio OX=7962 GN=mycb PE=3 SV=1
Q9MZT6	Myc proto-oncogene protein OS=Sylvilagus floridanus OX=9988 GN=MYC PE=3 SV=1
P49709	Transcriptional regulator Myc OS=Carassius auratus OX=7957 GN=myc PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF01056 all species →	Myc_N	Myc amino-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR002418 all species →	Family	Transcription regulator Myc	Interproscan
IPR012682 all species →	Domain	Transcription regulator Myc, N-terminal	Interproscan
IPR050433 all species →	Family	Myc family transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45851 all species →	MYC PROTO-ONCOGENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX37128.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.