Gene detail

Detailed information of RMX37488.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4124:259493...267201
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00012834

ATGGATTCCCAAAATGTTGGTGTACTAAAACATGCCTCGTTGAGAAATTACCCGTTCTTGTATGAGTTATACCTGAAGGACAATAACATCAGGTCCATTGAGCCGGGATCTTTCCATCATCAGAAAGACCTTGAACTACTGTGGCTTCAAGATAACAAACTCATTAACATAAGTCGTGAAACTTTTGAGGGATTGAAAACCCTGAACGAACTTCGTTTGGATCATAACAAGCTACAGAGGATTTTCCAGGGAACATTTTCATACACACCACTCTTGAGGAAGCTTGATCTTCGGAATAACACAATAAGTGTGCTCGAGGAAGGTGCATTTGACGAATTGGATTATTTAGAAAATATTTTGTTAAGTTTCAACTCTCTGACAACTATTAACAAAGGCGTTTTTGGAAATTTAATGTCCTTAAAGACTCTGGAGCTGGCTTCGAATGGATTAAAGACAATTGATGGAAATGCTTTCGATTGCGCTCCGGTAGTCAATAAACTAGTGTTGAATGGAAACAAGCTCGATAAAATTCCCGCAAAAGTTATAGCGAACCTTAAGTTTCTAGAGTTTCTTTATGTCAACAACAATCCACTAGAGTTAATAGAAGCAGATGCTTTCAAAGGGCTACGACGCCTGACCACAATTGAATTAAGTCATTGCAAAATTTCTTCGATTCAAAATGGGTCTTTTGATGACCTCGGACACCTTGAAGCGGTCCATGTACGTAATAACCCTTTAAACTGCAATTGTCACTTGAGATGGCTTCCGACATGGTTGTCAAGGAGACCAGGCTTGACATTTGATGGCGCCATTTGTCACAAGCCAAATGACATTTCCGGAACTGGTTTGACCTCGGCAAACCTTACATCCTTTGTTTGCTCATGCGCAGCATGTAAAATGGATGCAAATTGCAGCGGGGAATCAGTCAATTGTTCCTGCCCAGACAACTGGGCGGGGTCATCCTGCAGTGATACCTGTCAGTCAGACAGCGGGGCTGTCGGTACGTGTCAAAACTTTGGCGGGAAATGCTTTTGCGGAGGAAACATAACTACCAAGCCGTTGTCAAGAGCCATTTGTTCATTCAACATAACCTCAGCAAAGTGCAGCGAAAATGGTGAATTAAAAAAAAATGGGTCTCGTTTAGAGTGTAAATGTAACATAGGATTTGAAGGGAATGGAAGTTACTGCACTGACATAAATGAGTGTAACACGGGGAAACATTTCTGTCTAAAACATTCAGTATGCATCAATACGCAAGGATCACACCGCTGTGAATGCCAGGAGGGGTTTACAGAGGAAGTTGAGGGACTGTGCATGGACGTAAATGAATGTTCGAGGCAAAAACCATGTCATGTCAACGCTACATGCTACAACAGTCTAGGTTCATATACCTGCATATGCCACGCGGGCTTCGTTGGGGATTCCTGTATGCCAGAACCAGAAAAGCCGACAGATCTCAAAATAACAGTCATTTCTAGTACAGAGGTTTCCGTGTCATGGACTGCTGTGGATATTTCTAAAACAAAGTTAATTAAAGTGGAATATAAACGATTTGGGATTCATGGCGAGGACTGGGAGGTTATAAACCTGCAACCAAACGAAACAAGAGCAACTTTGAGAGAGCTGACACCTCATGCAAACTATTTGGTTCGTGTAGACTCCCACTCCGACGGAGGTTTTCAAAACAGCTTGGTGATCGTTGTGGCGCTCGCAGTGAGCTTATTTGTGCTAATAATCATCGCAGTGTTACTCGTCTACTTAATGCGAAGGAAGAAGAAGCCCAAAAGGGGAAGCAATCCACAATATGTCCCTGGACTGGAGGACTTGATTGAGATGAGAACCCGTACTCAGAGTGGTGGAGCTGATCACAGAGGAAACAGAGATCATTTGGAGTTAGGCGGTAATCTGCATTCGTTCGCAAGCGGTACAGTCGATCACACTGATGAATGGGAAATTGAGCGAGACCGTCTTCTAACTGGTCAAAAACTCGGGGAAGGCCAGTTTGGTTTGGTGTTGGAGGGTACACTTATGACTGACGGCGATCTCGATGGGTTTCGACTTAGTGTCCCGTTCATGGGCTTCTAG

Transcript

rna-pdam_00012834

ATGGATTCCCAAAATGTTGGTGTACTAAAACATGCCTCGTTGAGAAATTACCCGTTCTTGTATGAGTTATACCTGAAGGACAATAACATCAGGTCCATTGAGCCGGGATCTTTCCATCATCAGAAAGACCTTGAACTACTGTGGCTTCAAGATAACAAACTCATTAACATAAGTCGTGAAACTTTTGAGGGATTGAAAACCCTGAACGAACTTCGTTTGGATCATAACAAGCTACAGAGGATTTTCCAGGGAACATTTTCATACACACCACTCTTGAGGAAGCTTGATCTTCGGAATAACACAATAAGTGTGCTCGAGGAAGGTGCATTTGACGAATTGGattatttagaaaatattttgttaagtTTCAACTCTCTGACAACTATTAACAAAGGcgtttttggaaatttaatgTCCTTAAAGACTCTGGAGCTGGCTTCGAATGGATTAAAGACAATTGATGGAAATGCTTTCGATTGCGCTCCGGTAGTCAATAAACTAGTGTTGAATGGAAACAAGCTCGATAAAATTCCCGCAAAAGTTATAGCGAACCTTAAGTTTCTAGAGTTTCTTTATGTCAACAACAATCCACTAGAGTTAATAGAAGCAGATGCTTTCAAAGGGCTACGACGCCTGACCACAATTGAATTAAGTCATTGCAAAATTTCTTCGATTCAAAATGGGTCTTTTGATGACCTCGGACACCTTGAAGCGGTCCATGTACGtaataaccctttaaactgCAATTGTCACTTGAGATGGCTTCCGACATGGTTGTCAAGGAGACCAGGCTTGACATTTGATGGCGCCATTTGTCACAAGCCAAATGACATTTCCGGAACTGGTTTGACCTCGGCAAACCTTACATCCTTTGTTTGCTCATGCGCAGCATGTAAAATGGATGCAAATTGCAGCGGGGAATCAGTCAATTGTTCCTGCCCAGACAACTGGGCGGGGTCATCCTGCAGTGATACCTGTCAGTCAGACAGCGGGGCTGTCGGTACGTGTCAAAACTTTGGCGGGAAATGCTTTTGCGGAGGAAACATAACTACCAAGCCGTTGTCAAGAGCCATTTGTTCATTCAACATAACCTCAGCAAAGTGCAGCGAAAAtggtgaattaaaaaaaaatgggtcTCGTTTAGAGTGTAAATGTAACATAGGATTTGAAGGGAATGGAAGTTACTGCACTGACATAAATGAGTGTAACACGGGGAAACATTTCTGTCTAAAACATTCAGTATGCATCAATACGCAAGGATCACACCGCTGTGAATGCCAGGAGGGGTTTACAGAGGAAGTTGAGGGACTGTGCATGGACGTAAATGAATGTTCGAGGCAAAAACCATGTCATGTCAACGCTACATGCTACAACAGTCTAGGTTCATATACCTGCATATGCCACGCGGGCTTCGTTGGGGATTCCTGTATGCCAGAACCAGAAAAGCCGACAGATCTCAAAATAACAGTCATTTCTAGTACAGAGGTTTCCGTGTCATGGACTGCTGTGGatatttctaaaacaaagttaaTTAAAGTGGAATATAAACGATTTGGGATTCATGGCGAGGACTGGGAGGTTATAAACCTGCAACCAAACGAAACAAGAGCAACTTTGAGAGAGCTGACACCTCATGCAAACTATTTGGTTCGTGTAGACTCCCACTCCGACGGAGGTTTTCAAAACAGCTTGGTGATCGTTGTGGCGCTCGCAGTGAGCTTATTTGTGCTAATAATCATCGCAGTGTTACTCGTCTACTTAATGCGAAGGAAGAAGAAGCCCAAAAGGGGAAGCAATCCACAATATGTCCCTGGACTGGAGGACTTGATTGAGATGAGAACCCGTACTCAGAGTGGTGGAGCTGATCACAGAGGAAACAGAGATCATTTGGAGTTAGGCGGTAATCTGCATTCGTTCGCAAGCGGTACAGTCGATCACACTGATGAATGGGAAATTGAGCGAGACCGTCTTCTAACTGGTCAAAAACTCGGGGAAGGCCAGTTTGGTTTGGTGTTGGAGGGTACACTTATGACTGACGGCGATCTCGATGGGTTTCGACTTAGTGTCCCGTTCATGGGCTTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91X17	Uromodulin OS=Mus musculus OX=10090 GN=Umod PE=1 SV=1
Q19267	Protein disulfide isomerase crld-1 OS=Caenorhabditis elegans OX=6239 GN=crld-1 PE=1 SV=1
Q4V7M2	Cysteine-rich with EGF-like domain protein 2-B OS=Xenopus laevis OX=8355 GN=creld2-b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF13306 all species →	LRR_5	BspA type Leucine rich repeat region (6 copies)	Repeat	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR026906 all species →	Repeat	BspA-type LRR region	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050541 all species →	Family	Leucine-rich repeat and transmembrane domain-containing protein	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24369 all species →	ANTIGEN BSP, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX37488.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.