Gene detail

Detailed information of RMX37650.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4106:537908...543111
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004318

atccaagatggcgcgTGAACGCGCTAGTTCTGCATTAACTCCTTTGACGGAAACTACTTTGTTTGTAGGTCCAAAAATTCCAGATGAAATCAAACGAATGATACCTCATCTAACAAAGATAGATAAGGCCTTATTCAGAAAGATTTTACAAGttattatttcagttttggagGGAAAGGTTCCTGATGATGGTCTGCTCCAGAAGCTTCAGTCAGAAACTGTAACAGAGGATGTCATATCCTCTCTATATGCTGGGCTTTACTCACTTCTGCGCAGTGCTCTGCGTTTGCCCCAGACATCTTTAAAACCAGAACAGTTTAAGGCAGACCTTGGAGAACTGAAGATTCCTGCTGAATTAATTCCTGATCTCTCAAGCGTTGTGTTTGGAGAAAAAAGACTGGCATTTGATGCAGCTGCTcttcaaaacagaaatcaCCTTCCAACTTTAGATTCACTGCGATGGCGAGTCGATGTTGCTATATCCACAAGtgcCCTAAACAGAGTGTTGGAACCAACAGTGCTTATGGAGCTGAAGCTCAGTGATGGAAAGGTCCATACATTTGAGGTGTCCTTGTCCAAATTTCATGAGTTACGTTATAATGTGGCATATGTGTTGAAAGAAATGGaggaaattgagaaaaagagCATTTTGAAGATACAAGATTAATTTTCAGCCTCTAACAGTATAGGTAGGCTAGGAAGCTATAATTTGTTGTTTAGTGGCCAGTATTTGATTTAATAGAGAGCAAAAGGATAATATGTTTGTGAGATGTGGACAGTGGCTGAAAGTAGAGAGTTCTTTTCCCAAGCTTGATACAGATCTTGTGTCTGTGATGCTGAGAAATTTGCTTTCTAGTGTGCAATTGTGCCAAAGTAGGTGTACTCGCCTTCCaattacttttcatttgtctGTGCTTAACTTTCCTCTTGCCAAGTTGCTTCCTGACAAAATCAAGTAACACCGAATGCCTGCACTATCTTAGTAACGTGTTATTGTGTTAATCAGGCTGGAGAGCAGCAAGACTCATGAAACAACCCCAGAATTTGACTAGTTATGGTTTACTTGTCATTGTTCCAAGGGAAGGTTTGCAGTGTGCTTATTGTTCTTTTAGTTGACAATAGCAAAATTTTGTGCTGGAGAATCATGGTGTCttcttgtatttttcagaTTACTCTAAAATTTGTTGTACAAAAGTTAGAAATAATCATGTGTGGAGAGACCATTTCAATCTTAATTTAGACAAACCCAAATAGTTTTTCTAAGAAATAAGGCAAAAAGTGATGGAATAAAAAGGTGTATGCTAGTTTTGAACACAGCTAGAAAGTTAAATATAACACAGTGTGGGTATACTGTAGCATATACTCTCTTTGTGTCAAAAGCTTTCTTGTGTTCTCTAGGCGTTGTTTGAAATCTCTCCAACAATCAGTCATAGACCACAACTCCACATGGTAATGACAAAACACCACAGATGTAacagaaaattgtaaagtgCTTGATGTTCAGTAGATGTGATaaataggaaaattatttagtaGTGGGGCATAAGTATTTTTGCCTCCCAGTTTTCCaattagaaatatttctgatAAGAGCGAAGCAttagaatgaaattttaattgtcatGTTCAGTGCAAGTGTACCCAATGTCTACTCTTCCAGCTCTGTGGAGTTTGTGTATAATCATTGACCATATTCTTGTAATGATTTACTTTCTGTTATCAGGAAAGGTATCTAATTTTTTAAGAGATATTTCTAAccttttgaaatataatttaagacTTGTTGTCATTGTGttaaaaaaaggaccCTTCTTGATGTAGACTATActtatggaaaaataaaagttaaccAAGAAGTAACTAGGTTGGCTGGCTAATGATAGAAAAGATAATTGTGTTAAGTTATGAACTTGAAAGATGTACATATCAAGAAATACAACACTTCCATTGAGTGATTTTATTACACTTCCAATAATCAAGATTTACTGACAACACATTGCAGTGCAAATGATTACTTATTAAAAACTACTGTACACATAGCCTTAACTTAATCACTACAAACAATACAAGTAATACTGTGTAGTGTTGGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GZQ3	COMM domain-containing protein 5 OS=Homo sapiens OX=9606 GN=COMMD5 PE=1 SV=1
Q9ERR2	COMM domain-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Commd5 PE=2 SV=1
Q8R395	COMM domain-containing protein 5 OS=Mus musculus OX=10090 GN=Commd5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07258 all species →	COMM_domain	COMM domain	Domain	Interproscan
PF21672 all species →	COMM_HN	COMMD protein HN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037357 all species →	Family	COMM domain-containing protein 5	Interproscan
IPR017920 all species →	Domain	COMM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15666 all species →	COMM DOMAIN CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22561	COMMD5, HCARG; COMM domain containing 5	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.