Gene detail

Detailed information of RMX37734.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4103:474921...483898
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00006606

CTCAGACCCAGTCTTCTCAGTCTGCACGTGGTGCATGTTATCAAAATGGCAAGTGAGAACACAGAAGAAACGGACCAAATATTGGCTGAATTTTTGTCCTGGTGTGGGCGAAACGACCTTAAATTAAGTGAAAAGGTGAAGGTTGGACTAAAGGGATCTTGTCATCGTTATGGCATGACAGCTGTGGAGAACATTGAGGAAGGGGAATCCTTGTTTCAAATTCCACGGTCACTTGTTTTGCAACCGAAGACTTCATCCATCTCCAAACTTTTTGAAGATTTATCTGATGAGGATGAGTTTGAATCAGAAAGAGGGTCTGGCTGGGCTCCTCTTCTCCTGACATTGATGTACGAGTACACTAATCCAACATCTCACTGGAAGCCGTATTTAAACCTGGTGCCTGAAGTAACAGTCTTAGACCAACCCATGTTTTGGAACGTAGAGGAGAGACAAAGAGAACTGAAAGGGACTGGGATTGAGGAAGATGTTGAAAATGATGTACAGGGCATCAAGGAGGAATATATTACTACAGCTTTGCCTTTTATTAAGAAGTATCCACAGTATTTCAGGTATAGATCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTTTTCTTGGGCTTCATCCCACTCTCTCTCCACCAGAGACCCTATTTGTTATTGGTCTTATTGAGTCCTGTCACAGTCTTTCTCTGTACAAACACATGGCAGCATTTGTCATGGCCTACAGTTTCACTGAACATAAGTCAAGTCCTGATGATGATGATGACGATGATAGTGAAGATGATGATGATGATGAAGATGAGAATAATGATGCAGCTCCTGCCATGGTGCCAATGGCAGACATACTTAATCATATCAGTAACAATAATGCTCACTTGGAGTTTGGTACTCAAACTCTGACAATGGTGGCAACGCAAGATATTCCAAAGGGACAGGAAATTTTCAATACTTATGGTAACCTTGCCAACTGTCACCTTCTGCAGTCATATGGATTTGTGGAGGAAGAATTACCAAATCCATATGACATGGTAGAGTTACCCATCAGTGCATTTATTGAGGTAATGAAGGACAATCAGTCACAACAGGAGAAAGGAATATTTCACTCTAAGCTTGAGTTCCTAGAAGAAGCAGGTGTGGCTTCCAAGGATGACTTGTTTCTTTTTGAACGTGAGGGATGTTCACACTTTGGTCCAGATTTGTATGCTACTCTGAGAATCCTTCATCTGTCTGGAGAGAAGTTCAAACAATTATTGGAAGAGCAAGTAAAGAAACAGAGAAGTGAAGAATTTGATGACATTGGACATGTGCTGGATCAAATTGATGATGAAACTAAAAAGGATACATGTTGGAGATTCTTGGAGCTTGTTTATAAGGCTGAATGTGACAAAGGGAAGAAGAAAAGGAAAATCAAGGAAAAGGACTTGCAACTGAAACAGAAGAAAATTAAAACTACTGGCTATGGAAATTCAGACTCCATGGAGAGTCTACTGATCAGCACTAAAGATTGTGGTAACAGACACATACAAACTAACAATGGCAGTTTGGAAAAAAACAAAATTGAAAGTGAAAATGAATTAAATCCCTGGTCCAAAGATGACGCTTGTGCTTGTGTGAAGAGAACTTCAGACCCAGGAAAATGTGATGCTGAGAGAGATGAAGCTTCAGATGTAGAAAGCACAGGGAAAAAGAAGCTATGCTGTGATGAGGATGGCAAAGCTGGTGGCAGCAGTGATATCAGTGGGGATCACATAAGTAATGAAAATGAAACCAACAGCAGAAATGACAATTATGATGATGATGATAATGACAATGATGACAATGTCGATGACAACAGTGAGGATGATGAGGATGATGATAGTGGGGATGATAGCCAAGAAGAATCTAAACTATCTCTAAGTTATGGTAAACAACACAAGCTTTGTTAG

Transcript

rna-pdam_00006606

CTCAGACCCAGTCTTCTCAGTCTGCACGTGGTGCATGTTATCAAAATGGCAAGTGAGAACACAGAAGAAACGGACCAAATATTGGCTGAATTTTTGTCCTGGTGTGGGCGAAACGACCTTAAATTAAGTGAAAAgGTGAAGGTTGGACTAAAGGGATCTTGTCATCGTTATGGCATGACAGCTGTGGAGAACATTGAGGAAGGGGAATCCTTGTTTCAAATTCCACGGTCACTTGTTTTGCAACCGAAGACTTCATCCATCTCCAAACTTTTTGAAGATTTATCTGATGAGGATGAGTTTGAATCAGAAAGAGGGTCTGGCTGGGCTCCTCTTCTCCTGACATTGATGTACGAGTACACTAATCCAACATCTCACTGGAAGCCGTATTTAAACCTGGTGCCTGAAGTAACAGTCTTAGACCAACCCATGTTTTGGAACGTAGAGGAGAGACAAAGAGAACTGAAAGGGACTGGGATTGAGGAAGATGTTGAAAATGATGTACAGGGCATCAAGGAGGAATATATTACTACAGCTTTGCCTTTTATTAAGAAGTATCCACAGTATTTCAGGTATAGATCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTTTTCTTGGGCTTCATCCCACTCTCTCTCCACCAGAGACCCTATTTGTTATTGGTCTTATTGAGTCCTGTCACAGTCTTTCTCTGTACAAACACATGGCAGCATTTGTCATGGCCTACAGTTTCACTGAACATAAGTCAAGtcctgatgatgatgatgacgatgatagtgaagatgatgatgatgatgaagatgagaATAATGATGCAGCTCCTGCCATGGTGCCAATGGCAGACATACTTAATCATATCAGTAACAATAATGCTCACTTGGAGTTTGGTACTCAAACTCTGACAATGGTGGCAACGCAAGATATTCCAAAGggacaggaaattttcaatactTATGGTAACCTTGCCAACTGTCACCTTCTGCAGTCATATGGATTTGTGGAGGAAGAATTACCAAATCCATATGACATGGTAGAGTTACCCATCAGTGCATTTATTGAGGTAATGAAGGACAATCAGTCACAACAGgagaaaggaatatttcacTCTAAGCTTGAGTTCCTAGAAGAAGCAGGTGTGGCTTCCAAGGAtgacttgtttctttttgaacGTGAGGGATGTTCACACTTTGGTCCAGATTTGTATGCTACTCTGAGAaTCCTTCATCTGTCTGGAGAGAAGTTCAAACAATTATTGGAAGAGCAagtaaagaaacagagaagTGAAGAATTTGATGACATTGGACATGTGCTGGATCAAATTGATGATGAAACTAAAAAGGATACATGTTGGAGATTCTTGGAGCTTGTTTATAAGGCTGAATGTGACAaagggaagaagaaaaggaaaatcaaggaaaaggaCTTGCAActgaaacagaagaaaattaaaactactgGCTATGGAAATTCAGACTCCATGGAGAGTCTACTGATCAGCACTAAAGATTGTGGTAACAGACACATACAAACTAACAATGgcagtttggaaaaaaacaaaattgaaagtgaaaatgaattaaatccCTGGTCCAAAGATGACGCTTGTGCTTGTGTGAAGAGAACTTCAGACCCAGGAAAATGTGATGCTGAGAGAGATGAAGCTTCAGATGTAGAAAGCACAGGGAAAAAGAAGCTATGCTGTGATGAGGATGGCAAAGCTGGTGGCAGCAGTGATATCAGTGGGGATCACAtaagtaatgaaaatgaaaccaacAGCAGAAATGAcaattatgatgatgatgataatgacaatgatgacaATGTCGATGACAACAGTGAGgatgatgaggatgatgatAGTGGGGATGATAGCCAAGAAGAATCTAAACTATCTCTAAGTTATGGTAAACAACACAAGCTTTGTTAGGGCAAGTTACTTTTAGTAGGCTCacatatgaaatatttctttttcatggtcATGACAGAGATGATATCTCAGTGGCCATTGGAATGGAGGAGAACCCTTAAAAGTGTTGCGGAGTTTTGTGTAAAACAAAGATACGGAGACAGCATtatgaatgaagaaaatacagTCGAGAACTGCAGCAGAAGACATCTGTCTGTACTCAGAATCAAGCAAGGACAGAAATCTATTTTCGGGCGCATTTGTGAACTAGCCACTGACGTTAATGCATAGGAATGGTGGAGGAATATTTTGAAGATATCAAGGTATTTATCATTTGATGTGGCGATTGTTTCAAACTCGCACCTTCAAGTTCTGGTGTCGTTCACTGAAAAATGTATGAGAAGCAAGGTACACACATTTCACAAATGGTATAAAATGAGTTTTTATTACAATCGTTTTAGCTGGTgtttaaaaatacttattcTGTAGACAAACATCAATGCATGCATTGGTgttcaaaaataacaaattaatacATGCTTTATCTTGTCTCTGGAATCAGCTACTAAAGGTTTTCTGGGTTAGTTTCTACAAATCCATCCAAAGTTAATGTGATGAAAGTTGTCTGTCTTTTTCTACATCTTCATCGGACATCCTTTAgtaactgAAACTATTCGATCGGTGGGCATTTTGTTTCACGACAAGTTTTCTGACATTCTTCAAGggttttaaagttgtttccaTTGTTCATGCATCCACCGAAGGTAAACATCTTGCACTTTTTAGTGACTTTGTCGTAGTAGTAACGTATAAACGCAGCCCTGCAAGGTCCTGTGAACTTCGGGAGACAACAGAAAATTCTTGGCGTCGAGTCTAGCGAATTGTCTTTCTTAGGTCCTGGTTCAGTTGATGTAAGTGGTGAACTATCTGTATAATGGACAAGAAATGATATGTTGAGCTTATAAAACAGATGACGTGTTGATTTCCTCGTCAATGGCAACAACGGAAAAAGAGATATTAAGCAACTTGCTTACCTTCCGTGGTTGCAGTaacaattagaaaaaaacagataaagaGAAGATGTACCAGCATGGTGCAAGAAGATAGAGGTGTATTAACTCAACTCCGAAGCGCGTGCAATCACTATAGTGAAATCACTACACTCTTTGATAcgttatttcctcttttcaacttttaaagCCGCAGGATATACTTCCGGCGCAATGGCTTCTGGAACGGGTTACGTGATGGCCCGCGTGGGCTGTGATTGGcgcatattttcaaaatgaagtcCAGAACACGGACGTTTACTTCCGTGTGGAGTTGTTCAAGATGacgaaacattttatttttgaaagtaaaaatgttaaaaaccGTCGAATCTGTGTACTTTGAAGAAGCATAATTTATCGTatgtaattaacaattattcaacGAAGAGGAGATGAACAGTACTTGCTACTCATTTCCGAATTTGGCAAATAGTGCGCGTGAAAAGGACTATTCACTTGTGTGGTGCATACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C0H8I2	N-lysine methyltransferase setd6 OS=Salmo salar OX=8030 GN=setd6 PE=2 SV=1
Q803K4	N-lysine methyltransferase setd6 OS=Danio rerio OX=7955 GN=setd6 PE=2 SV=1
A4QNG5	N-lysine methyltransferase setd6 OS=Xenopus tropicalis OX=8364 GN=setd6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044430 all species →	Domain	SETD6, SET domain	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR050600 all species →	Family	SETD3/SETD6 methyltransferase	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR036464 all species →	Homologous_superfamily	Rubisco LSMT, substrate-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13271 all species →	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018022 all species →	Biological Process	peptidyl-lysine methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0018026 all species →	Biological Process	peptidyl-lysine monomethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05302	SETD6; N-lysine methyltransferase SETD6	EC:2.1.1.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.