Gene detail

Detailed information of RMX38258.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4055:740107...760146
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003403

ATGGTACTCAACACACAGGTCTATAACAGAAATCTAACCAAAGGCAGAAAAATAAAGAAGAAACTACACATGGGAAAGGAAACTAGTTTACAGCCAGTAATTCCACAGAGCCACGTTTCAGTTCCTGGATATGGTTGTGCTGAGTTTCGCTGCATTCCTCAGAAAGTTTCTTCAGCTGATGAATCTCACCCCATCAAGTTAAAAACAATGAATTCCAGACTTTATTTCACACACCCTTTGAAGTTGTTAGTGACACGTCAGTTCAGTCCTCATTGTTTGGCACAGTCAGACTGTCAGTGGCTTTACAAAGTGCAAAGTGGAGGAAGCCATACAAGTCTCAATATTGATGTAGGAGAAAACTGCAAGGTTGTGTTCACGACACAAGAATACCCAAAGATTTTAGCATCAGATGATGATTCCATTGGTGAACAACATCTCAAAGTACATGTGGCTGATGGTGCAATCTTAGCAGTGTTACCTGATCCTATCATTTGCTACAAGAATGCCAAGTTCCAGCAAGAACAGCACATTTTTGCAAGTGAAAGCAAGGTTTATGTGGATGGAAAGCTTGTACATGGAGATGCTATTAGGCTTGATCGTGATCTTGTAAATGTGAAGGATAACATGTGTTCTCTGCAAAAAGCTTTAGAATATACTAAGGCGCTTGGATCTTGTGTATTCATTGGACCTCAGTTTAGAGAGCTTAAGTGGAAAATTCAAGAGAAAGTTAAAAGCTTATCAGATCCAAGTGATGGTTTCACTGTTTCCGCAAGTGTTTTAAACCAACCACTATGTGATGGAGTAGTGATAAAGCTACTTGCGGCACAGAGCACAGAACAGTGTGTGTATTTCACGACTATGTACGGTCTAGACCGCAAAGTATACTGGGAATTTCTTGTTGCTTGTCCTGTTGGCCGTGTTGGAATTGTTTTTCGAATACAAGATGAGCTCAATGAATTCATCCGTGATGGAAAGACTGTTGCAGAGTTGATGAACATTGGGAAGCAATTTTTAGGTGTGAATCAAGTATTACCAGGGGTAGGGGAACTTGTTGAAGAAGTGCAAGTGGAAGGGACATTTCCTGATGGCACTAAATTGGTCACAGTTCACAGTCCAATATGCCAAGAAAATGGAGACTTGAATCTTGCTCTCTATGGAAGCTTCCTACCAGTGCCTTCAGTGGAGATATTTTCATCTGCAAGTGCTAATGTTGTGTCTATGGGTGGTAGAAATTCACCTGGTGCCATGATTCCCTCAGTCAAAGGAGACATTTTACTCAATGCTCAGAGAAGGACGATCAAACTGAAAGTCACAAGCTTGTGTGACCGGCCTATTCAGAACATTGCTGCCGGTACTGCAGTTAGATTTGAACCTGGGGACACCAAAACAGTTGAACTGGTTGACATTGCTGGAAACAGAGTGGTTCGTGGAGGAAATGGACTGACTGATGGACCAGCTTTGCCCGAAAACTTGGACACTGTCATGAAGAAGGTTGCTTCAAAAGGTTTTGCTCACAAGCCACAGGATAAACTTGATGCTGGTGTCAGTAAAGTGACTATTCCAAGACCACTGTACATTGACATTTATGGCCCAACTGTTGGAGACAAGGTCTGTCTTGGTGACAGTTGTCTCATTGTTGAGGTGGAAAAAGATTACACAGTGTATGGAGATGAACTTAAATTTGGAGGTGGAAAGGTTTTGAGGGAAGGCATGGGCCAGGCAGCAAATGTCACCAATGACACAGCTCTGGACACTGTCATCACTAATGCCCTGATTGTGGATGCAGTTGCTGGTGTTATAAAAGCTGACGTGGGAATAAAGAATGGTATGATTTCTGCCATTGGAAAAGGTGGTAACCCAGATGTGATGGCAGGTGTTACAGAGGGGATGGTTTGTGGTGTTGGCACAGAAGTCATAGCTGGTGAAGGACTCATCTTGACAGCAGGTGGGATTGATGCGCACATTCACTTCACTTGCCCACAACTTGCTGAAGAAGCGATTGCCTCTGGACTTACTACCATGGTTGGAGGAGGCACTGGGCCTGCAACTGGTACTTGTGCGACCACTTGTACTCCTGGACCAAACCACATCAAGGCAATGATTCAAAGCACAGATGGCTTTCCTCTTAACTTTGGCTTCACAGGCAAGGGAAACACTTCAAAGTCTAGTGGAGTTGCAGCAGAGTTAGAAGAACAAATTAAGGCTGGTGCAATAGGAAATCTGAAGGAGGATGTGGCATTTGCTGAGTCTCGTATCAGAGCAGAAACAATTGCAGCTGAGGATATACTGCATGACATGGGAGCCATAAGCATCATCTCTTCAGATTCACAGGCCATGGGCCGTGTTGGAGAGGTGATCTGTCGCACATGGCAAACAGCTGATAAAATGAAAAAACTGAGAGGAAAGCTTTCTGATGAAACGGGTGACAATGACAATATTCGTGTACGCCGTTACGTAGCCAAGTACACCATAAACCCAGCATTGGCGCATGGAATGTCACATGTCATTGGATCAATAGAGGTGGGAAAACTGGCAGATCTAGTGTTGTGGAATCCAGCTCTGTTTGGTTCTAAACCAGAGATTGTGGTGAAAGGAGGACAAATTGCATGGTCTCAGATGGGAAATCCTAATGCCTCCATACCAACCCCCCAACCAGTTAGGCCACGCCCAATGTTTGGTGCCTTTGGGGCTGCTATTGGAGCTAACTCTGTTGTGTTTGTAAGCCAGGAATGTACCAAGCATAATGTCTGTCAGACATATGGTATCAGTAAGAAGACTATTGCAGTTAAGGGCTGCCGTACAGTGAAAAAGAAAGACATGGTGCTAAACAACTACTTGCCCAAGCTTACAGTGGATCCCCAGACATACAAAGTTCACATCGTTGATCCTGATAATCCATCCATCAAAGAACATATTACATGCAATCCAGCGGAAACCATCCCCATGGCTCAGCGATTTTTTATCTTTTAA

Transcript

rna-pdam_00003403

ATGGTACTCAACACACAGGTCTATAACAGAAATCTAACCAAAggcagaaaaataaagaagaaactaCACATGGGAAAGGAAACTAGTTTACAGCCAGTAATTCCACAGAGCCACGTTTCAGTTCCTGGATATGGTTGTGCTGAGTTTCGCTGCATTCCTCAGAAAGTTTCTTCAGCTGATGAATCTCACCCCATCaagttaaaaacaatgaattcCAGACTTTATTTCACACACCCTTTGAAGTTGTTAGTGACACGTCAGTTCAGTCCTCATTGTTTGGCACAGTCAGACTGTCAGTGGCTTTACAAAGTGCAAAGTGGAGGAAGCCATACAAGTCTCAATATTGATGTAGGAGAAAACTGCAAGGTTGTGTTCACGACACAAGAATACCCAAAGATTTTAGCATCAGATGATGATTCCATTGGTGAACAACATCTCAAAGTACATGTGGCTGATGGTGCAATCTTAGCAGTGTTACCTGATCCTATCATTTGCTACAAGAATGCCAAGTTCCAGCAAGAACAGcacATTTTTGCAAGTGAAAGCAAGGTTTATGTGGATGGAAAGCTTGTACATGGAGATGCTATTAGGCTTGATCGTGATCTTGTAAATGTGAAGGATAACATGTGTTCTCTGCAAAAAGCTTTAGAATATACTAAGGCGCTTGGATCTTGTGTATTCATTGGACCTCAGTTTAGAGAGCTTAAGTGGAAAATTCAAGAGAAAGTTAAAAGCTTATCAGATCCAAGTGATGGTTTCACTGTTTCCGCAAGTGTTTTAAACCAACCACTATGTGATGGAGTAGTGATAAAGCTACTTGCGGCACAGAGCACAGAACAGTGTGTGTATTTCACGACTATGTACGGTCTAGACCGCAAAGTATACTGGGAATTTCTTGTTGCTTGTCCTGTTGGCCGTGTTGGAATTGTTTTTCGAATACAAGATGAGcTCAATGAATTCATCCGTGATGGAAAGACTGTTGCAGAGTTGATGAACATTGGGAAGCAATTTTTAGgtGTGAATCAAGTATTACCAGGGGTAGGGGAACTTGTTGAAGAAGTGCAAGTGGAAGGGACATTTCCTGATGGCACTAAATTGGTCACAGTTCACAGTCCAATATGCCAAGAAAATGGAGACTTGAATCTTGCTCTCTATGGAAGCTTCCTACCAGTGCCTTCAGTGGAGATATTTTCATCTGCAAGTGCTAATGTTGTGTCTATGggTGGTAGAAATTCACCTGGTGCCATGATTCCCTCAGTCAAAGGAGACATTTTACTCAATGCTCAGAGAAGGACGATCAAACTGAAAGTCACAAGCTTGTGTGACCGGCCTATTCAGAACATTGCTGCCGGTACTGCAGTTAGATTTGAACCTGGGGACACCAAAACAGTTGAACTGGTTGACATTGCTGGAAACAGAGTGGTTCGTGGAGGAAATGGACTGACTGATGGACCAGCTTTGCCCGAAAACTTGGACACTGTCATGAAGAAGGTTGCTTCAAAAGGTTTTGCTCACAAGCCACAGGATAAACTTGATGCTGGTGTCAGTAAAGTGACTATTCCAAGACCACTGTACATTGACATTTATGGCCCAACTGTTGGAGACAAGGTCTGTCTTGGTGACAGTTGTCTCATTGTTGAGGTGGAAAAAGATTACACAGTGTATGGAGATGAACTTAAATTTGGAGGTGGAAAGGTTTTGAGGGAAGGCATGGGCCAGGCAGCAAATGTCACCAATGACACAGCTCTGGACACTGTCATCACTAATGCCCTGATTGTGGATGCAGTTGCTGGTGTTATAAAAGCTGACGTGGGAATAAAGAATGGTATGATTTCTGCCATTGGAAAAGGTGGTAACCCAGATGTGATGGCAGGTGTTACAGAGGGGATGGTTTGTGGTGTTGGCACAGAAGTCATAGCTGGTGAAGGACTCATCTTGACAGCAGGTGGGATTGATGCGCACATTCACTTCACTTGCCCACAACTTGCTGAAGAAGCGATTGCCTCTGGACTTACTACCATGGTTGGAGGAGGCACTGGGCCTGCAACTGGTACTTGTGCGACCACTTGTACTCCTGGACCAAACCACATCAAGGCAATGATTCAAAGCACAGATGGCTTTCCTCTTAACTTTGGCTTCACAGGCAAGGGAAACACTTCAAAGTCTAGTGGAGTTGCAGCAGAGTTAGAAGAACAAATTAAGGCTGGTGCAATAGGaaATCTGAAGGAGGATGTGGCATTTGCTGAGTCTCGTATCAGAGCAGAAACAATTGCAGCTGAGGATATACTGCATGACATGGGAGCCATAAGCATCATCTCTTCAGATTCACAGGCCATGGGCCGTGTTGGAGAGGTGATCTGTCGCACATGGCAAACAgctgataaaatgaaaaaactgagAGGAAAGCTTTCTGATGAAACGGGTGACAATGACAATATTCGTGTACGCCGTTACGTAGCCAAGTACACCATAAACCCAGCATTGGCGCATGGAATGTCACATGTCATTGGATCAATAGAGGTGGGAAAACTGGCAGATCTAGTGTTGTGGAATCCAGCTCTGTTTGGTTCTAAACCAGAGATTGTGGTGAAAGGAGGACAAATTGCATGGTCTCAGATGGGAAATCCTAATGCCTCCATACCAACCCCCCAACCAGTTAGGCCACGCCCAATGTTTGGTGCCTTTGGGGCTGCTATTGGAGCTAACTCTGTTGTGTTTGTAAGCCAGGAATGTACCAAGCATAATGTCTGTCAGACATATGGTATCAGTAAGAAGACTATTGCAGTTAAGGGCTGCCGTacagtgaaaaagaaagacatggTGCTAAACAACTACTTGCCCAAGCTTACAGTGGATCCCCAGACATACAAAGTTCACATCGTTGATCCTGATAATCCATCCATCAAAGAACATATTACATGCAATCCAGCGGAAACCATCCCCATGGCTCAGcgattttttatcttttaagtGCTTAGAGTAATGGACAGAAAGGGTTTCTCCAGATACCTTACTTTGACAAACTAAATTCTGGTTAAATTTAGAAACTGGATGTGGCTAGGAATGTGTAATGAATTGTTATTAATATGTGGATGTAATTATATTCATTGTGGCTGATGAGATTACAGTATGAACTCCCCTTAAGAGACTCTTGTAAAAGAACAGCTTTTCTTATATGTTAGTTATATGTTATAGCTTTTGGCTTGTGAAGTATGCAGGACTTTTATGTGAGAAATGGGTTCCCTTGGCTGGTGCGTAAAAGTGGCCATGTGTGGTGCACATCTCTAGTGGCTACTCACTAGTCCCGGTTAAGGTCCAATTACAAACTTAACACCTTTTTCATGTGACAAGAGTGTTGGCATATGAGAGCTTACACTGTATCTCTTAAGACACAGTGTAAGCTATtagtcttttaaaaaagtctaATAGGGGATGATTTCTTCAGCAACAAGCATATATGTTTTAATTGGAGGTAAAATGGCAAAACTTAATTTAAGGTATTTCTGCATCCTGTTTAGCATGAGAAGGCaataacagaaacaaaatgtatAACAATTATATAGTGGACAATCTATGTTCATTAAACAAGAACAGTCAAGATTTAATATTGTTAGTAAAATTGATCCAAATATCACACTTGAAATGTTCAATGTTGAGCCACTTAAGCACAGAAACATTGTTTATAGAAAAGACTGTGTGATAATTAGTTTCCTTGCTATTTTGGTAGAGTTTAATCATAACTTTGATCAAACATGTTGAACTAAACTGGATGTTGTAAATGTAAGGTTTAGAAATAGGTATCAGTCAAGCTTGCTGATTAAGAAAAGGAGCTTGAAAAGGGCTTTTAGAAGCCTTGTAAAGATAATACTGTAATTGTATTTCATTTCGTGGATGTAGAACATTCTCTTGAAGAGTTACATATAATCAATTGTTGGCTTAACAGGTTGCAGTTATTATGCGTTTCTGTTATTCCCAATAAAGAAGGTAAATGTTCTGATTAAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E0ZS48	Urease OS=Oryza sativa subsp. indica OX=39946 PE=1 SV=1
B9GCH9	Urease OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0234800 PE=3 SV=2
Q9SR52	Urease OS=Arabidopsis thaliana OX=3702 GN=URE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009763 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00547 all species →	Urease_gamma	Urease, gamma subunit	Domain	Interproscan
PF01774 all species →	UreD	UreD urease accessory protein	Family	Interproscan
PF00449 all species →	Urease_alpha	Urease alpha-subunit, N-terminal domain	Domain	Interproscan
PF00699 all species →	Urease_beta	Urease beta subunit	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002026 all species →	Family	Urease, gamma/gamma-beta subunit	Interproscan
IPR036463 all species →	Homologous_superfamily	Urease, gamma subunit superfamily	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR017951 all species →	Domain	Urease alpha subunit, C-terminal	Interproscan
IPR036461 all species →	Homologous_superfamily	Urease, beta subunit superfamily	Interproscan
IPR005848 all species →	Family	Urease, alpha subunit	Interproscan
IPR002669 all species →	Family	Urease accessory protein UreD	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR011612 all species →	Domain	Urease alpha-subunit, N-terminal domain	Interproscan
IPR050112 all species →	Family	Urease Alpha Subunit	Interproscan
IPR029754 all species →	Binding_site	Urease nickel binding site	Interproscan
IPR002019 all species →	Family	Urease, beta subunit-like	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43440 all species →	UREASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016151 all species →	Molecular Function	nickel cation binding	Interproscan
GO:0043419 all species →	Biological Process	urea catabolic process	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009039 all species →	Molecular Function	urease activity	Interproscan
GO:0035550 all species →	Cellular Component	urease complex	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX38258.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.