Gene detail

Detailed information of RMX38265.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4055:700749...712563
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003398

ATGGCGTCGAACCTCAGCAAAGTTGCTGGAATGGGTTCGTGTATTAACGGTCACGTTGTTCAAAACGATAGCGCGATGTCGGAAGCACAAATGGGACAAGAGAGAGTAGCCATTCTAGATGCTGGGGCGCAATATGGAAAGATCATAGATCGCAGGGTCCGTGAACTATGCGTGGAGTCAGAGATGCTCCCCTTGGACACATCTATATACACTATAAGAGAAAAAGGTTTTAGGGCTATTATCATCTCTGGAGGTCCAAATAGTGTTTATGCTGAGGATGCTCCTAAATACGATCCAGCTATATTTACCATTGGAATTCCTGTCTTAGGGATTTGTTACGGAATGCAGATGTTGAACAAAGAGTTTGGTGGGACTGTGATGAAGAAAGATATCAGGGAAGACGGACAATTTAACATCAATGTAGAAACATCCTCAGCACTTTTCAGAGGACTACAGTCAGAGCAAGAAGTTCTGTTGACGCATGGAGATTCAATCGACCGTGTTGCAAGTAGCTTGAAAGTAATTGCTAAGTCTGGTGACATTGTTGCAGGTGTCGAGGATGAGTCACGAAAGTTGTATGGGGTCCAGTTTCATCCAGAAGTTGATCTCACAGAAAATGGTGTTGTCATGTTAAGAAATTTCCTTTACGGGGTTGCGGGATGTTGTGGAACATACACTGTGATAAGTCGAGTAGACACCTGTATTCAGCAAATCAAGAAGAGTGTTGGTAACATGAATGTTTTGGCATTGGTGAGTGGAGGGGTAGATTCAACAGTCTGTGCAGCTCTGCTTCACAAGGCCCTTCGCCCTGAGCAAGTTGTGGCAGTACATATTGACAATGGATTTATGAGGAAGAATGAGAGTCAGGAAGTAGAGGAATCTCTTAAACGATTAGGGCTTAGATTGAAAGTTGTAAATGCTGCATTACGGTTTTATAACAGCACAACTGTAATATCTGGTAAAAAAGACCAATCGCCTGTTAAAAAACAGGTAACAAAAACCTTGAATGTGACAACTGACCCCGAGGAAAAGAGGAGAATCATAGGAGACACATTCATCAAGGTTGCCAATGAAGTATGCAAGGAGTTAAACCTTGATGAGACCAATACGTACTTAGCACAAGGTACTCTTCGACCTGACCTTATTGAAAGTGCTTCATCACTGGCCAGTAACAAGGCAGATGCCATCAAAACTCACCATAATGATACAGACTTTGTTAGAAGTTTGCGCGCACAGGGAAGAGTCATTGAGCCCCTGGTAGATTTTCACAAAGATGAAGTCAGAGCACTTGGAAGGGAGTTGGGTTTACCAGCAGACATTGTTCAAAGACATCCTTTCCCTGGCCCTGGTCTGGCTATTCGTATCATATGCGGTGATGAACCTTATCAGGGGAGCGACTTTGCGGAAACAAATATCATCCTGGGACAGATTGTAGACTTTGTTACTGCTATTAAGAAGCCCCATTCGCTCTTCAGTCGGGTGAAACTGAGTACATCAGAAGACGACAGAGAGACCCTTTTGCAGATAACATCAAAATACAAAATTGGTGCCACCCTGCTGCCAATAAAATCGGTTGGTGTCCAGGGAGACGGGCGGACCTACAGCTATGTGGTGGCGTTATCGAGCAACGACTCACCCGACTGGAAATCACTGATGTTCCTCGCTAAACTAATCCCCAAAGTTTGTCATAATATCAACAGAGTTTGTTACACGTTCGGCAAGAGAATCAAGTTCCAGATTCAAGACATCACCCCCACATTCTTGTCACCAGGTGTAATAAGCACTTTAAAACAAGCAGACCACGTGGCATATTCTGTCATTCAAAAACATGGTATTGCAGACAAAATAAGCCAAATGCCGATTGTTTTGATACCAGTCCACTTCGACCGCGATCCTATCGACCACATTCCATCTTGTCAGCGGTCTGTTGTGATCAGAACGTTTATCACAAGTGACTTTATGACAGGAGTGCCCGCTACACCTGGGAAGCAAATTCCTATCGAGGTTTTGAATGAAATGGTGGCATCTTTGAAAGAAGTACAAGGAATTTCACGAGTTCTCTATGATTTGACTTCCAAGCCTCCAGGAACGACAGAGTGGGAATAG

Transcript

rna-pdam_00003398

GGAGAAAGCTGCGGCAATGCGCCGCTGACTAAGAAGCATGCGCTAATTTGCGCAAACCGCGGGAATCGAAGTGGAAAATGGCGTCGAACCTCAGCAAAGTTGCTGGAATGGGTTCGTGTATTAACGGTCACGTTGTTCAAAACGATAGCGCGATGTCGGAAGCACAAATGGGACAAGAGAGAGTAGCCATTCTAGATGCTGGGGCGCAATATGGAAAGaTCATAGATCGCAGGGTCCGTGAACTATGCGTGGAGTCAGAGATGCTCCCCTTGGACACATCTATATACACTATAAGAGAAAAAGGTTTTAGGGCTATTATCATCTCTGGAGGTCCAAATAGTGTTTATGCTGAGGATGCTCCTAAATACGATCCAGCTATATTTACCATTGGAATTCCTGTCTTAGGGATTTGTTACGGAATGCAGATGTTGAACAAAGAGTTTGGTGGGACTGTGATGAAGAAAGATATCAGGGAAGACGGACAATTTAACATCAATGTAGAAACATCCTCAGCACTTTTCAGAGGACTACAGTCAGAGCAAGAAGTTCTGTTGACGCATGGAGATTCAATCGACCGTGTTGCAAGTAGCTTGAAAGTAATTGCTAAGTCTGGTGACATTGTTGCAGGTGTCGAGGATGAGTCACGAAAGTTGTATGGGGTCCAGTTTCATCCAGAAGTTGATCTCACAGAAAATGGTGTTGTCATGttaagaaatttcctttacgGGGTTGCGGGATGTTGTGGAACATACACTGTGATAAGTCGAGTAGACACCTGTATTCAGCAAATCAAGAAGAGTGTTGGTAACATGAATGTTTTGgcatTGGTGAGTGGAGGGGTAGATTCAACAGTCTGTGCAGCTCTGCTTCACAAgGCCCTTCGCCCTGAGCAAGTTGTGGCAGTACATATTGACAATGGATTTATGAGGAAGAATGAGAGTCAGGAAGTAGAGGAATCTCTTAAACGATTAGGGCTTAGATTGAAAGTTGTAAATGCTGCATTACGGTTTTATAACAGCACAACTGTAATATCTGGTAAAAAAGACCAATCGCCTGTTAAAAAACAGGTAACAAAAACCTTGAATGTGACAACTGACCCCGAGGAAAAGAGGAGAATCATAGGAGACACATTCATCAAGGTTGCCAATGAAGTATGCAAGGAGTTAAACCTTGATGAGACCAATACGTACTTAGCACAAGGTACTCTTCGACCTGACCTTATTGAAAGTGCTTCATCACTGGCCAGTAACAAGGCAGATGCCATCAAAACTCACCATAATGATACAGACTTTGTTAGAAGTTTGCGCGCACAGGGAAGAGTCATTGAGCCCCTGGTAGATTTTCACAAAGATGAAGTCAGAGCACTTGGAAGGGAGTTGGGTTTACCAGCAGACATTGTTCAAAGACATCCTTTCCCTGGCCCTGGTCTGGCTATTCGTATCATATGCGGTGATGAACCTTATCAGGGGAGCGACTTTGCGGAAACAAATATCATCCTGGGACAGATTGTAGACTTTGTTACTGCTATTAAGAAGCCCCATTCGCTCTTCAGTCGGGTGAAACTGAGTACATCAGAAGACGACAGAGAGACCCTTTTGCAGAtaacatcaaaatacaaaattggtGCCACCCTGCTGCCAATAAAATCGGTTGGTGTCCAGGGAGACGGGCGGACCTACAGCTATGTGGTGGCGTTATCGAGCAACGACTCACCCGACTGGAAATCACTGATGTTCCTCGCTAAACTAATCCCCAAAGTTTGTCATAATATCAACAgAGTTTGTTACACGTTCGGCAAGAGAATCAAGTTCCAGATTCAAGACATCACCCCCACATTCTTGTCACCAGGTGTAATAAGCACTTTAAAACAAGCAGACCACGTGGCATATTCTGTCATTCAAAAACATGGTATTGCAGACAAAATAAGCCAAATGCCGATTGTTTTGATACCAGTCCACTTCGACCGCGATCCTATCGACCACATTCCATCTTGTCAGCGGTCTGTTGTGATCAGAACGTTTATCACAAGTGACTTTATGACAGGAGTGCCCGCTACACCTGGGAAGCAAATTCCTATCGAGgtTTTGAATGAAATGGTGGCATCTTTGAAAGAAGTACAAGGAATTTCACGAGTTCTCTATGATTTGACTTCCAAGCCTCCAGGAACGACAGAGTGGGAATAGAATAGAGGTTTATTCTTTGCTCAGGATAGTGagattttaattctctttatttaATATCGAGATTAAAACCCTTAACATTCAAAGAAGTGTCGCTAGAGTGTAATTGGCCAGACGACAGGTACAgtcaaaattgttcttttttcttaaaaaaatgatttcgaATTGTTAAATGTTAActtatttccaaaattttctttcattcatttatttctaaaaatggaaaattctattattttcaataactcttttttcttttttacaaatCTAAAACGATTGTCGTAGGTATCAAAATTGACTTCAGAAGGTAACTTCCGCCTAATATATATgagggaccttaagcagtcaggacggcaacgccaaggaagatttcgattaaaaaatggatttctgcctttaattagaatttcaaaaacagctgcatgtgtttaccgtctcCTACAGCGCCACACCTCAATTTCAGCACAACGTATAAAAGAAGCGTTGAGTTCcgaatggaaattaaaataatttgccgtcgcggtttCGGTTCGCAGACGAGCAGATTGTGGTGATTTcatgttattgttttgcatgagacggctaggaaatgtacaaagttttaaaacgcacgtgctaAGCTATTGTTCTCccaattagatcttttgtttttccatgcCCTCGTTGCCGTCGCGGGTTGCTTAACGTCCCCATTTTAACTTCCGTAAACGTTTGTAAAAGTTGGCCACAGCAATTTGTGGTTAATCTATGTAGGCCACAATGTATTTTCTCGCGTTCAGCGTGAAGTACAATTTGTTCTGTCATGCCTCTCTACGTTTTACCGATTGGACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49915	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens OX=9606 GN=GMPS PE=1 SV=1
Q5RA96	GMP synthase [glutamine-hydrolyzing] OS=Pongo abelii OX=9601 GN=GMPS PE=2 SV=1
Q3THK7	GMP synthase [glutamine-hydrolyzing] OS=Mus musculus OX=10090 GN=Gmps PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF00958 all species →	GMP_synt_C	GMP synthase C terminal domain	Domain	Interproscan
PF06508 all species →	QueC	Queuosine biosynthesis protein QueC	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR001674 all species →	Domain	GMP synthase, C-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR004739 all species →	Domain	GMP synthase, glutamine amidotransferase	Interproscan
IPR025777 all species →	Domain	GMP synthetase ATP pyrophosphatase domain	Interproscan
IPR018317 all species →	Family	Queuosine biosynthesis protein QueC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11922 all species →	GMP SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003922 all species →	Molecular Function	GMP synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0006177 all species →	Biological Process	GMP biosynthetic process	Interproscan
GO:0003921 all species →	Molecular Function	GMP synthase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01951	guaA, GMPS; GMP synthase (glutamine-hydrolysing)	EC:6.3.5.2	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.