Gene detail

Detailed information of RMX38607.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3994:495884...500999
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00008405

atATTACGTCGAGGGAAATGATATTTGCTACCGGTTCGAgagtaattgaaaaattttaaactcattCTGGTCAAAAGAGTACCACACTTCAATAAAAATAGTGAATATTTTAGAAGAGCATTTGACAGCCTCAAGGGTTAAAACTACTCAAACGGAAGACAATTGGGCAACGAGGATTAAGCCAATTAGAATCTGAATCGGCAGGCACAAGGGGTAACTAAGTGAGAtaaattgtgaaaagaaaaccttaaTGTTGCGGGCATACAAAGATCTTTCTTCAACATAAGGTAGAAAGGCCGGAACGAAAAGACGAGAATAAGCGCAGAAGAATGCCGCTCTCTCGCAACAACCCAAGACGAATGAATAAGGCATTAAATTGAAGACAATGACAGGAAATTCCACAAACGATGATTCTAAGTTATCTGTAGAAATTATCTTGTACATTATGCCGATCACTGGAATCATCGCCAACACATTCGCCATTCTTTCCTCTGCTAGACTGCTTCAGCTGCAACCGCTTAGCCCTAATGTCTTCGTGCTTGGATTATCATGCATCGACCTGATCTccatcacatttttttgtgttccaTCTTGGTTATTCCACATCAAAGGCGAATGGGTTGGCGGGAAGAAACTTTGCGATTTCCAGGGATTTGTCTTCCTATTTTCGACGCTTTGTTCAGCGTTCTTAGCAACTTTAATGGCGGTCGATCGCTGCATAGCCGTCACCAAACCATTTTTTCATCGCAAAACAATGACAGTAAACAAGGCAAAAGTGCTACTGTCAGGAGCTATAGCAGCGTCCTTGTTCGTCGCGTTTTTTCCCATCTTGAAATTTGGAAGCTTTGTGAGAAGCTCAAGTGGCTCTTTTTGTACTTTAAACTGGTTTCCGAAAAACGCGCTTGACCGCGCGTTCTGTGCGTTTTACGCAGTTCTCGGTGGTCTACCTGCGACCGTAGTCCTATTTTGTAACATAACAGTCATCTGGGAACTGTTTAGAAACAGGAAACGCCGGGTATCGGTGACGAACATGATTCTTCCTGGAGCACGACGGATGGCACAGTTTAGAAACATCGAACGAGAGGACACCGAAATACAGTTCTCAAGAACGATGGTACTAATTTCTGTAGTGTACCTCTTTGGCTGGATTCCATTCATGGTCCGTCTAATAGGGAACGCTTTTTACCACTGGAAAAACAGCACTGCAGATCTTCTTGTCTGCTCGTTTCTTCTGCTAAACTTCATCGCTGACCCTTTTATGTATGTCCTTACACGAAAACAATATCGTCAAGTACTTAAGATGATGTTATTGTGTCGATGCAAAGGAAGGCTAAACAATCGTGTTTTTCCCATCACCTATAACAGTCAACATCCCAGCATATCATCAGCGAGTCTGCAAGCCCTTTGTTTCTCAGCGAATGAACAGCAGCTGAAACAACTACGGGAGATATTGAAGAGTGCCTCACCACATCCATCCAGAATGGAAGACAGAGATAAACAGAAAGAGAAGACCAGTTGTCTTGAATCCACTCAGCCGCTAGGAAATACAGGAAACCTTCCTCAACAAACCGAATGCTTCTAGCGTGGTTGTTCCCTTACCTCAGTGCTTGGTCGCAAAAGCGGGTGAAAAATTGTCTCTCCTCCCTCATTCACCAGAAAAGCGTACACCGATCCCCACTGGTCGTTCAACAGGATGTTCTCAATCTCTTCCAGTGTGGCATCAATTCCAACCACACCTATAGTCCTAGGATGAGACAATAATAACTCGACTTAAATCCTTGATTCCAAAAAAGGCAGCGAAATGAGTCCCAAATAAAATCAGAGACAATCCGTTTGGAGAGCTGAAACCATGATTTCTTCCTATTCCAACGTGGTACGCGTTCAGAAATTGAAACTGACTTCGGAAGTAATGGAGCGTACTTCGGTACGCCCGGCTTCGGCTTGTGCTATTTCGAAATTTCGAAAACTTATCAAAGATCTTCTTTGCAGTTGCTTGTTTGATTATCTGCTTGCTTGCTCGTTTGAGATAGAACTTTGTAAAGACataaagaacaaatttgaacttttgctAGTTTGGAGCCTACAGTAGGCTAGCAAGACTTGCCAAGTATGACCTAACCGGGCGTGACAAAGCCAAAAGTGACTGGCTTTGCGTGACCCAATAGGCCGTGACCAAGCCAAAAATAACTTAGCGATGCGTCATTGAAATTGTTGAGAAAAGTAGGAAAttctaataaaaataataaaaaaaaaattaataaagtaCAGTTCTATTCATAGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43088	Prostaglandin F2-alpha receptor OS=Homo sapiens OX=9606 GN=PTGFR PE=1 SV=1
P37289	Prostaglandin F2-alpha receptor OS=Bos taurus OX=9913 GN=PTGFR PE=2 SV=1
Q28905	Prostaglandin F2-alpha receptor OS=Ovis aries OX=9940 GN=PTGFR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005515 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR008365 all species →	Family	Prostanoid receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11866 all species →	G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007204 all species →	Biological Process	positive regulation of cytosolic calcium ion concentration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX38607.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.