Gene detail

Detailed information of RMX38779.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3963:9019...27042
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00022101

CTTCCCAGCTGTTCTTtgggatgtcacgcaacagTCGAGGAATCATCTCGCTACCGCCGGAATATTAGGAAAGCGTGACCTGTAGTGATGATTGTGTAGCTGAAAAGAGAGCCTTAGGTCACTCCTAATCGTCGTTGCGCAACGGATATTTCCAGAGAAGAGATCCCTTCAGACTCTAAAAATGGCTGTCTTCGGATCACGAGCAAATATACAGGGAACATTAAACTGTTTGTTCAAACGAACAGGAGTTGCAGagtGTTTGGGTGCTCAGAAATTGGTTGCCAGGTTCTCTTCACCTTCTCAAGAGTATGACAAGCCAGCAATTAAGACTGCAATTCCAGGACCACGCTCACAAGAGTTGATGGCAGAGCTGTCTCACGTACAGctGACAAAGGGAATGtcatattttgttgattttgagaAGAGTTTAGGAAACTTCATTGTTGATGCTGATGGCAATGTTTTGTTAGatgtttttcaacaaattgcTTCTGTTCCATTAGGTTATAATCACCCTGCTTTGGTTAAAGCTTTACAAGATCCAAAGAATGTGTCATCCTTTGTCAACCGAGCAGCCTTGGGTCTCTATCCACCTGTCTCCTTTCTTCAAGATTTAAAAGATGCACTGCTAAGTgtAGCCCCACCTGGACTTCCTGAGGTAACTACAATGGCTTGTGGAACGTGCTCAGTAGAGAATGCCTTTAAATTGGCTTTTATGCATTATAAGGCTAAACAGCGTGGTAATCCTGAACCCTCCTTGGAGGACCTAACAAGCTGCATGAGATCTCAGGCTCCTGGCACACCACCGTTAACAATTCTTGGTTTTGAGAGAGGATTCCATGGTCGAACTCTGGGTGCTCTTTCTACCACTCGATCAAAAGCAATGGCAAGAGTAGACATTCCTACATTTGATTGGCCGAAGGCGCCATTTCCTGTCCTGAAATATCCACTTGCAAActatgaaagagaaaacaaagcagaagaggaaaaatgtttggaaatgGCTCGTCAAGCTATCTTTGATAGTAATAATGCAGGCAAACCAGTTGCAGGAATAATCGTCGAACCCATTCAAGCTGAAGGCGGAGATAACCATGCAAGTGCTGACTTCTTTAAATCTCTTCAGAGGATCGCTAAAGAGTTTGATGCTCTGTTTATCGTTGATGAAGTACAGACAGGATGTGGAAGTACCGGTAAATTCTGGGCACACGAACACTGGGGTCTTATTGAACCTCCTGACATAGTGACCTTCTCAAAAAAGATGCTAATCGGTGGGTTCTACCATAGGCCAGAAATACGAGTTCAGCAGCCACTACGTATCTTTAACACGTGGATGGGGGATCAAAGCAAActtgttcttttaaaagaagttgTTAAAGTGGTGCGAGAGGAAAGCTTACTTCAAAGAGTACAAGAAAGTGGCAGGGTTTTGTTGAATGGCTTGGAACACATGCAGGAAAAATATCCGGGATTGTTTTCTCGTGCCCGTGGTGTAGGAACATTCTGTGCAATCGATTGCGCCGATGCAGATACTAGAgcagaatttctttcaaagatgAAAGCCAATGGTGTGGAGATGGGAGGTGGGAGTGGGGAAGTAAGCATCCGCTTCAGACCAACATTGACTTTTTCACAACGTCACGCAGATATTCTGTTTGAAGCAATGGACAAAGTGGCTTCCCAAATGCGATGATGTTGGATGTCGTTTACTCTCGAGTGAACCATacttctctttgaaatttgtttcaagtgcagtgatttttttgaaggaaaactgtCAACgaacaaagttattttgatttccggcattttttaaatctaaattaTGTTATGTCGCAATGACATTGTAATGATGCTATATAGAAGTAAGGTTAAAAATTCTATTCCATACCGCACTCTGTTAAATGGAGGTGAAAACTATGATTTCGTGGCCCTTTTGTGTTATATTAGGAGGTTACAGACTTGGAAGGTTCAGGAATACACCCCAGTGGCTACCTAAATCTAAGTGCACAACTCAGATTACCATTCGCAAATTTCTGACGTGTTTATTGGCTTTGTAGTAAGTTTTGCGACGTCGTCCTAAAGTCTTAAGGGATTTTCGTTATCAGAAGGACAAGCATGAATTAAGTGACTTTGAATTGCTCAAGCAGTAGTTTAGAAGTGGAGAATGTTCAGCTCTTGGACTGTTTAAACAATGCAACTGAACTCTCATTTGATTAAATAGggtaagtttgtaaagaaactgtggtgctgcgtcggtgggagagtaaaacagggtaatttagtattatcaactgagttgatagcaTAATCGGCCATCGTGAAGAgcttaaaagctgacgtttcgagcgttagtccttcgttagagcgatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P80147	4-aminobutyrate aminotransferase, mitochondrial OS=Sus scrofa OX=9823 GN=ABAT PE=1 SV=2
P80404	4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=ABAT PE=1 SV=3
P50554	4-aminobutyrate aminotransferase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Abat PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR004631 all species →	Family	4-aminobutyrate aminotransferase, eukaryotic	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43206 all species →	AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0003867 all species →	Molecular Function	obsolete 4-aminobutyrate transaminase activity	Interproscan
GO:0009448 all species →	Biological Process	gamma-aminobutyric acid metabolic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0009450 all species →	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13524	ABAT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase	EC:2.6.1.19 EC:2.6.1.22	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.