Gene detail

Detailed information of RMX38823.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3957:60823...70776
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00016758

ATGCAGAGTTCTAGTGAAATGATGGTAGAGAGATCGAAGCCTGCTAGCGCAGAGCAAGTTACAAGCACTTCAGGCACTGTTGACTTAACCCCATCGTCACATAGCGAACTTATTCAGTCCTCTACAATGCCGATGCCTTTGAAATCGTCCCCTGCTCCAAGCCCAGTAGATTGCGAGCTGGAAGAGGCGGATAACCCAAACGCTGGCATCGAGCAAGCCTTGCAATCGTTCGTAAGCAAAGAAATTCAAGAGCGGATTCAAAAAATATTGGAAGAAGTACAACAACTGTCAGATACTGAAAAATTGCTGCTTTACCTTCGACTACCAGGAGAGACAGCAACAGATTCTAAAGATGACTTTGATAATAATCAAGCTCTTCCCATCTCCACAACAAGAGCAGAGCAAACACAAGCTTTTCATTGGATTCGCTGTCATTTGGAGGAGTGTGATAATAACTCAACACTTCCAAAACATGAGGTCTATGATGAATACAAAGCTCACTGTGAAAGCATGAATGCTGCACGGACATTGAGTGCCCCTGACTTTGGAAAAATAATCAAGTGTGTGTTCCCAAGAGTAAAAGCAAGAAGGCTTGGTACAAGAGGCAATTCCAAATATCCTTTCATATTGTTATGCATCTTAACCTTCCTTAAGTACTGTTACAGTGGAATCCAGAGAAAGAAGAATGTCAAACCACCCACCCTTCCCACCCTTCAAATTCCTTCACCCAGTGAAAAAGAAAAGAGTTCAATGAATTCAGCAAACAACCTTGCAGGAGGTGACAAAATAGAAGAGGATCAAACTTTGTCAGCTGCATGTCTACTTGTGTGTGAGTGGGCAAACAAACTTCTTGGTCGAGTGTTCAGCACTCTCATTGAATTGGCCAAGTTTCTTGTTAGTGGCAGTTATGTCTCCAGTAAATCCATGGCGGCATATGTTGTACTGTCTGATCTTAATACTCCTCAAATGGGCCACTCATCAGTGTCATTGATTGCACCTTTAAAGCAAGTGGAGGAGCAACTGGTGCTGACACATAAACGGCGACAATCACAACAGTTACCTAAAAAAATACCTCAACGACAACAACAAAAGCAGATTCAACAAATTCCTGTAAACCCTATGTTATCACAAGGACAAGCTTTGTGTAGTGCTCCACAACTGCCTCTTAATTTTAAGACACTGGTCAGTATATCAAGTCAGCAGAAGCCAGTACACATTCAGCCCAAACCGATACAGCCATCACTTCAAAGCCCCCCTGCTCAAATGGGACAGTTTTATCAGCAACAGCAACCTGGTGGCAACCCAACCACCCCTCCCAGTGGCTATCCAACCAAGATTAGACCTATTACTCCATCCATGATATCCCCCACCACACCCATTCAACCTGCTGGGCCCCAGATAACATCACCTTTTCAGTCATCTCCAAAGTTCAACACCCCAGGCACACCTCAAAATCGTCCAGTTACTCCCAGCTCTGCGAGCGCAACTGCAAGGCACACTCCAAACTCAGCTGAGCCAACTCGCTTTCTTTTCACACCTATTCCGAATAGTTCCCAAGAGCAGAGAGTCACCAGGGGAGAAACAAGTCCTCCTACATTGCGGCCAACTGCCACCCATCCCAGCCAGTTGTTGAATGGAGACTGGTCCCAGTCACAGATGGGAGTAAATGATGTGCCAATGTCACCAAGTAAACAACCACGTCTAATAAATCAGAATGCACCCTCCACTCCAACATCCAATCGCAGACCTGGTTCATTTGCTTACCCCTTACTATCACCAAGGACACCGCAGCGCATTGCACCACAGCAGTTTGTTACTTCCCCAACAATGGCCTCTCCAGGGTGTGGTCGGCAGCTGAACCCCATCTCTCCCAATGTCACACAGCGGGGACAAGAATTTATGCTTCCTCTAGGGATCAACAATGCAGAGAATGTGGCTCAAACAGGCTTCACACAGAGTGTGAACATGACAAGTCCTCCATCATCTGATGGAGATGGGCATATGTCTCAGCAACAGTCAAAGCAGGGAAGTTCAGGGATTATTGCAAAGTCATGCAGATACAGTAGTGCAGCAGATAATGGACACATTTCACAGGCTCCTATCATGCAGACACTGGATTATTCACCAGAACTGGAGTCAATCTGTAACCAAGCCACAAGCTCTTCAGGGCAGATGCCCCCACCTTCATATCAACGAAGCCAGTCAGTTCCCCCTTTAACACAGCATGCACTGGCAGATCAAAGATTTCATCCCTTAACTCCACAGAATAACCCACGCCCACGTCACCTGACTCCGTCACCCATGGAGACACAGTCAAATCAACATCTGAATGGGTTAAAGGAACTTCGCAACAGAGTTCTCCATGGTGATGTCAATAACAATGGGTCTCGGCCATCACAGGAAAGTGCTTTTTCTGCACGAAGAAACCTCACACCTATGCTCAATGCTGAACAATCAAATGTAACTGCTTCAAACTGGGGCGTGTCCCAAGTGAGGACAAACAACAACCCCAGGGGTGCAGAGGACCATGAAATGACAATACTCGATGCAGGCTTGACATTTGCAGATCTCAATCATGAAAATGATGAGACCTTGTCTGATCTGAATACACTGGATGATGCTACAACAGAAGCAGTATTAAGGAACATTTGTAATAATACATCAGGGGTGTGGCCAACTAGTGATGTCCATGCATGGGGAGGGTCACAGGCACTGGAGATTATGGATTAA

Transcript

rna-pdam_00016758

GTGCGCTCACGCATGCGTAACCCCCCGTTATCCCATGTGCTGTTTGATTAATAATCTGAGATATTATTGTGGAGAGGGTATTTGGATGATCGAGGCTTGTTATGAACTTGTAGAACTCCTAGACTTGAAGTGACGAAGGTTACCCCTCAGAATCTCTGCTGATAGCCATGCAGAGTTCTAGTGAAATGATGGTAGAGAGATCGAAGCCTGCTAGCGCAGAGCAAGTTACAAGCACTTCAGGCACTGTTGACTTAACCCCATCGTCACATAGCGAACTTATTCAGTCCTCTACAATGCCGATGCCTTTGAAATCGTCCCCTGCTCCAAGCCCAGTAGATTGCGAGCTGGAAGAGGCGGATAACCCAAACGCTGGCATCGAGCAAGCCTTGCAATCGTTCGTAAGcaaagaaattcaagagcggattcaaaaaatattgGAAGAAGTACAACAACTGTCAGATACTGAAAAATTGCTGCTTTACCTTCGACTACCAGGAGAGACAGCAACAGATTCTAAAGATGACTTTGATAATAATCAAGCTCTTCCCATCTCCACAACAAGAGCAGAGCAAACACAAGCTTTTCATTGGATTCGCTGTCATTTGGAGGAGTGTGATAATAACTCAACACTTCCAAAACATGAGGTCTATGATGAATACAAAGCTCACTGTGAAAGCATGAATGCTGCACGGACATTGAGTGCCCCTgactttggaaaaataatcaagTGTGTGTTCCCAAGAGTAAAAGCAAGAAGGCTTGGTACAAGAGGCAATTCCAAATATCCTTTCATATTGTTATGCATCTTAACCTTCCTTAAGTACTGTTACAGTGGAATCCAGAGAAAGAAGAATGTCAAACCACCCACCCTTCCCACCCTTCAAATTCCTTCACccagtgaaaaagaaaagAGTTCAATGAATTCAGCAAACAACCTTGCAGGAGGTGACAAAATAGAAGAGGATCAAACTTTGTCAGCTGCATGTCTACTTGTGTGTGAGTGGGCAAACAAACTTCTTGGTCGAGTGTTCAGCACTCTCATTGAATTGGCCAAGTTTCTTGTTAGTGGCAGTTATGTCTCCAGTAAATCCATGGCGGCATATGTTGTACTGTCTGATCTTAATACTCCTCAAATGGGCCACTCATCAGTGTCATTGATTGCACCTTTAAAGCAAGTGGAGGAGCAACTGGTGCTGACACATAAACGGCGACAATCACAACAGTTACctaaaaaaatacctcaacgacaacaacaaaagcagaTTCAACAAATTCCTGTAAACCCTATGTTATCACAAGGACAAGCTTTGTGTAGTGCTCCACAACTGCCTCTTAATTTTAAGACACTGGTCAGTATATCAAGTCAGCAGAAGCCAGTACACATTCAGCCCAAACCGATACAGCCATCACTTCAAAGCCCCCCTGCTCAAATGGGACAGTTTTATCAGCAACAGCAACCTGGTGGCAACCCAACCACCCCTCCCAGTGGCTATCCAACCAAGATTAGACCTATTACTCCATCCATGATATCCCCCACCACACCCATTCAACCTGCTGGGCCCCAGATAACATCACCTTTTCAGTCATCTCCAAAGTTCAACACCCCAGGCACACCTCAAAATCGTCCAGTTACTCCCAGCTCTGCGAGCGCAACTGCAAGGCACACTCCAAACTCAGCTGAGCCAACTCGCTTTCTTTTCACACCTATTCCGAATAGTTCCCAAGAGCAGAGAGTCACCAGGGGAGAAACAAGTCCTCCTACATTGCGGCCAACTGCCACCCATCCCAGCCAGTTGTTGAATGGAGACTGGTCCCAGTCACAGATGGGAGTAAATGATGTGCCAATGTCACCAAGTAAACAACCACGTCTAATAAATCAGAATGCACCCTCCACTCCAACATCCAATCGCAGACCTGGTTCATTTGCTTACCCCTTACTATCACCAAGGACACCGCAGCGCATTGCACCACAGCAGTTTGTTACTTCCCCAACAATGGCCTCTCCAGGGTGTGGTCGGCAGCTGAACCCCATCTCTCCCAATGTCACACAGCGGGGACAAGAATTTATGCTTCCTCTAGGGATCAACAATGCAGAGAATGTGGCTCAAACAGGCTTCACACAGAGTGTGAACATGACAAGTCCTCCATCATCTGATGGAGATGGGCATATGTCTCAGCAACAGTCAAAGCAGGGAAGTTCAGGGATTATTGCAAAGTCATGCAGATACAGTAGTGCAGCAGATAATGGACACATTTCACAGGCTCCTATCATGCAGACACTGGATTATTCACCAGAACTGGAGTCAATCTGTAACCAAGCCACAAGCTCTTCAGGGCAGATGCCCCCACCTTCATATCAACGAAGCCAGTCAGTTCCCCCTTTAACACAGCATGCACTGGCAGATCAAAGATTTCATCCCTTAACTCCACAGAATAACCCACGCCCACGTCACCTGACTCCGTCACCCATGGAGACACAGTCAAATCAACATCTGAATGGGTTAAAGGAACTTCGCAACAGAGTTCTCCATGGTGATGTCAATAACAATGGGTCTCGGCCATCACAGGAAAGTGCTTTTTCTGCACGAAGAAACCTCACACCTATGCTCAATGCTGAACAATCAAATGTAACTGCTTCAAACTGGGGCGTGTCCCAAGTGAGGACAAACAACAACCCCAGGGGTGCAGAGGACCATGAAATGACAATACTCGATGCAGGCTTGACATTTGCAGATCTCAATCATGAAAATGATGAGACCTTGTCTGATCTGAATACACTGGATGATGCTACAACAGAAGCAGTATTAAGGAACATTTGTAATAATACATCAGGGGTGTGGCCAACTAGTGATGTCCATGCATGGGGAGGGTCACAGGCACTGGAGATTAtggattaagaaaaaatgcatcGTTTTTTCTTGGTAAAAACCTGGATACAAgcttatttatatatatatatatatatatatataaataggTATGAAAAAAAGACTCAATACCATTTCATTCCTATTTGCGGGCTGGATTTATTAAAACACCGTAGTTCGTGTCAATTTTAATTGATCCCTGCTTGTGAGTTTCAGTAATTAAAAAGATTGTTGTCTTTATAGTTATCAGCCTTAGCGACGGTGTGCTAGCGtggaataaataattttaaagtgtaatttatattttcttacCTGTACCAAgcacttttttactttttcagtgCGAAATTTTTATGCAAGAGTAcattaaagaatgaaaaatttatttaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1L8H0H2	DNA-binding protein RFX7 OS=Xenopus laevis OX=8355 GN=rfx7.L PE=2 SV=1
Q2KHR2	DNA-binding protein RFX7 OS=Homo sapiens OX=9606 GN=RFX7 PE=1 SV=2
F8VPJ6	DNA-binding protein RFX7 OS=Mus musculus OX=10090 GN=Rfx7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02257 all species →	RFX_DNA_binding	RFX DNA-binding domain	Domain	Interproscan
PF18326 all species →	RFX5_N	RFX5 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003150 all species →	Domain	DNA-binding RFX-type winged-helix domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039779 all species →	Family	RFX-like DNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12619 all species →	RFX TRANSCRIPTION FACTOR FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX38823.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.