Gene detail

Detailed information of RMX39183.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3865:91481...95049
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00013529

ATGATCCTGCTGACAATTTATCTTGAACAACCTCAGAGTTCACGCCGTGACACTTCTAGTGGTATACAGTATGGACATGCAACTGTCACTTCAAGCCACATGATGTTAATATGTGATGACGTGGGCGCTTCTTGGAGAGATCTGGGTACTCAGTTGAGGCTCCCATCAGCTGTGGTTCGTAATGTTGAAAATGATTACACCTTATGTCGAGAAAGGGCGTGGCAAGTGCTAGACAGATGGAAACAAAGAAACGGGACTGGAGCAACTTTGGGAAATCTTACAGATGCTCTGGAGAAAATAGGGAAGAGAAATGCCGCTCAAAGGCTCGTTGAGACAGAGAAAGTGGAGGCTGGGTTACACTGTGCGCGAGTACAAAGTTCGAAATTGCGAAGGGAAGTTGACCTTTTGAGGACGGGCCTACAGAATGAGAAACAGAAACACGACACAACAGTCAAAGAACTCAGAGAATTTACCAAAAGCCTACAAGAAATGCTAACAGAAAAGGGTGAGGATGAGCGACAACATATAGAAACAAGGGTCCAGGGCTTAGAAACCACAATTAAAAGGCTGGAAACATACCTTTCGACTGAAAAAACCGCCGATAAGGAGGTTCTGATGCAAGAAACGACCCGCTTGGGAAAAATCTGCGACCAGATGGAAGAGGGTCTACGGGTTGTGCAAGAAAACATCAAAATGATCTCTGAAAACCAGAAGGAAATCACGGGTAAATCATTACAGCCCGAAAATAGTGCATGGGAGGAAACAAGTGAGAGGCGTTCAAGTGCAAGACAGAAGGGTGGAATGGCTGACCGAAGCCAGAAAGACGCCGGACAAAGATATGGGGAAAGGCAGAAGAACGAAGGAGCGACCATACAACTTTTGTATGAAGGAAGCCAAGCATGCTTGCGGTGTCCTGATTTGGAAAAGGAGCTTAACGACATTAAGACAAAAAGAGAAACAATTAAAAACAAAATCAGCCAACTCGAGCTCAAGCACAAAGAAGATAAGAAGAAGTGGGACGAGGATAAAAAAGAAAAAGATAAGAAAATAAAAGAAAATGAGCTTGAAATTGGAAACTTAAAGAAAACCAACGAAAAACAGCAGAGGCAGAAAGAAAGACTCTCCAAAAAGAAAGCTGAAATGGAGAAAAAGAAAACTGAAGTCATGGAAGAAAACAAGAAAATCATGGCTCGGATTGAAAAGTTATTGGCCGAGAAGGAGGAACTGGAAAAGGCGTTACTTGTTCAAACCGGTGCAAAAGAACAGGAACGGCTCAAGGCTGAAAATGGTATGCTGTTGACTAGAATTGAACAGCTTTCCAAGAGAGTGAACAACAGCGAGCTAGAGTGCAAGAGGCTTCACGAGGAGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGATTATCATTTATACTGGTGTTTTCTTACCAACTGGAAAGGAATTTGCCACAAACTGCCCTGGTGTTATTTGCAATTTGAAGAGAGATGTTACATCAAAATTGCATGCTTCTAGATCTTCCGATGGGCCAGGTAAAGCAAGTGACATATTTGACCATCAGAAAGGAACTACCAGTGGAACAGAGGAGAGGAAAGATTCATGGTGGTCCATTGATCTCGGCTCAAGCCATCGGCTTGTAATCACACATTACTCTTTAAGACACGGAAAAAGAGATGGAGAGTCAGTTCTTACCCATTGGCAACTGGAGGGATCCAATGACGGAATGAATTGGAAAAAACTTGAAACTAATTATAAAAGAGCAGATCCTCCACGCTTCAGAGATCCTCATCCATATTATACAGGCACCTGGTCAGTTGAAGGCAAAATGGGAGCTTTCCGATTTTTTCGAATTTTCCAAACAGGCAGAAATTCCTCTCACAAATATGGAATCTACTTGTCCGGAATTGAACTGTTCGGGGTACTTCTAAACATCTAG

Transcript

rna-pdam_00013529

ATGATCCTGCTGACAATTTATCTTGAACAACCTCAGAGTTCACGCCGTGACACTTCTAGTGGTATACAGTATGGACATGCAACTGTCACTTCAAGCCACATGATGTTAATATGTGATGACGTGGGCGCTTCTTGGAGAGATCTGGGTACTCAGTTGAGGCTCCCATCAGCTGTGGTTCGTAATGTTGAAAATGATTACACCTTATGTCGAGAAAGGGCGTGGCAAGTGCTAGACAgatggaaacaaagaaacggGACTGGAGCAACTTTGGGAAATCTTACAGATGCTCTGGAGAAAATAGGGAAGAGAAATGCCGCTCAAAGGCTCGTTGAGACAGAGAAAGTGGAGGCTGGGTTACACTGTGCGCGAGTACAAAGTTCGAAATTGCGAAGGGAAGTTGACCTTTTGAGGACGGGCCTACAGAATGAGAAACAGAAACACGACACAACAGTCAAAGAACTCAGAGAATTTACCAAAAGCCTACAAGAAATGCTAACAGAAAAGGGTGAGGATGAGCGACAACATATAGAAACAAGGGTCCAGGGCTTAGAAACCACAATTAAAAGGCTGGAAACATACCTTTCGACTGAAAAAACCGCCGATAAGGAGGTTCTGATGCAAGAAACGACCCGCTTGGGAAAAATCTGCGACCAGATGGAAGAGGGTCTACGGGTTGTgcaagaaaacatcaaaatgatCTCTGAAAACCAGAAGGAAATCACGGGTAAATCATTACAGCCCGAAAATAGTGCATGGGAGGAAACAAGTGAGAGGCGTTCAAGTGCAAGACAGAAGGGTGGAATGGCTGACCGAAGCCAGAAAGACGCCGGACAAAGATATGGGGAAAGGCAGAAGAACGAAGGAGCGACCATACAACTTTTGTATGAAGGAAGCCAAGCATGCTTGCGGTGTCCTGATTTGGAAAAGGAGCTTAACGACATTAagacaaaaagagaaacaattaaaaacaaaatcagccAACTCGAGCTCAAGCACAAAGAAGATAAGAAGAAGTGGGACGaggataaaaaagaaaaagataagaaaataaaagaaaatgagctTGAAATTggaaacttaaagaaaaccaacgAAAAACAGCAGAGGCAGAAAGAAAGACTCTCcaaaaagaaagctgaaatggagaaaaagaaaactgaagtcatggaagaaaacaagaaaatcatgGCTCGGATTGAAAAGTTATTGGCCGAGAAGGAGGAACTGGAAAAGGCGTTACTTGTTCAAACCGGTGCAAAAGAACAGGAACGGCTCAAGGCTGAAAATGGTATGCTGTTGACTAGAATTGAACAGCTTTCCAAGAGAGTGAACAACAGCGAGCTAGAGTGCAAGAGGCTTCACGAGGAGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGATTATCATTTATACTGGTGTTTTCTTACCAACTGGAAAGGAATTTGCCACAAACTGCCCTGGTGTTATTTGCAATTTGAAGAGAGATGTTACATCAAAATTGCATGCTTCTAGATCTTCCGATGGGCCAGGTAAAGCAAGTGACATATTTGACCATCAGAAAGGAACTACCAGTGGAACAGAGGAGAGGAAAGATTCATGGTGGTCCATTGATCTCGGCTCAAGCCATCGGCTTGTAATCACACATTACTCTTTAAGACACGGAAAAAGAGATGGAGAGTCAGTTCTTACCCATTGGCAACTGGAGGGATCCAATGACGGAATGAAttggaaaaaacttgaaactaATTATAAAAGAGCAGATCCTCCACGCTTCAGAGATCCTCATCCATATTATACAGGCACCTGGTCAGTTGAAGGCAAAATGGGAGCTTTCCGATTTTTTCGAATTTTCCAAACAGGCAGAAATTCCTCTCACAAATATGGAATCTACTTGTCCGGAATTGAACTGTTCGGGGTACTTCTAAACATCTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47457 all species →	OS05G0345500 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX39183.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.