Gene detail

Detailed information of RMX39220.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3861:87860...108458
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00016186

ATGAAGTCAAGCTTAAGAGGGATTTATTCCAAGTTAAAGGACTCTGCAGTAGCATGGGATGAGAGGCTGTCATTAGCAAGGCATGCTTGGGACTCTAAGGATTGTGTGATTCCAAATAAGCAGCAAGTTCTCTTTGACTGGATCATCCAAGAAATTACTCTTGGGTATAAGAAAGGAGCGAAGTCTGTTGATCACGAGCTTTTGAGTGGACTTTGGCTGCTGCTTCTTCATACTCTCCAGAGTCAAGAAGATCTTTATAGTCCAGGGAATCTGCCAATCACTCTAAAATCTCAATTTATACAGGTATTTACAGATGCATTCATGTTTAAAGATTCTGTACAAAATGGAGCATCAATCAGCACCCCTATCAGCTGTTGCTATGCCATCATGTCTACACCTCACCTCAGTGCATCTATGGTGGCCAAATTTGAAAGTTATGCATCCTTCCTTTCAGCCTTGGTGACCTTGTATCTCCAAATATGCAGTGAAAGATCAGAAGAGCTTCACTTACTCTTAGAGATTTGCTTACAAAAATATCTTTTGGTGCAGAGACAACAAGCAAATCAGCGAAAGGTGTTCACGTCCATGTGCCACCAACTTCTAGAACCATTAATCAAACTGCGTCACATGTTGAAAGGCTTTTCTAAGATCTGTCAACCTATGGTGCTGTGTGGAGATCAACAACCTGAAGATAGTTGGCAAATTGGAAAAATGGAAAAGATCTCTTGCTTGTTGGAGTTAGCAGTAACCAGATGCCTCTTTCATAAAGATCACATGGCAGAGTATCCTCAGGCTTTCAGAGGCCAAGAGGAAAAACAAACTGAATCTGATGAACCTGCTAACAAGAAAGCAAGAATTTTTAGTTATCCCAAGCTTTTGTTTGAAAAGATATGGGAGATGGTGGAATCACAAGCAACAGCAGATGTTGACACAAAAGAGGCAGCTTTGGATATTCTTCCTTTTTTATACAAGGAATTTATCAAATCAAATAGAAAACCAAACTGTTCTGCCTCTCCTGTGGAGTTTGCCTTTTTCACAGAAATGTGTCAGTTGCTTGGTGTGTTGAATGGAAACAACATAACCCCCAGTATGTTCACCTTACTTCATCAATTGCTGGAAAGCATCCTGCACTATGATATTTACCAGGTATCAGATGACAACCAGAATGGCTTGGTACAATTCAACTCTTATGACAGTTTGGTCAAGATTGTAATTAAGACAGAGGAACCAGGCAAAGCTGTATTCCAGTGTCTTGATGTTCTGCTAAAACTGAATCACTCCTTGGTTGAGCCACACTTAGATGTTATTTGGAAAATGCTGTGGAGAACGGAATGCAGTGCTGGTGATTCACACAACTCTTTGATGAATTCTCTCATCTCCACGTATGTTAAACTGCGACAGTTTGATAAACTTGTTTTGGCAATTCTGGATTCTTTGAGAAGTTTGAACCCTTCAAGTTCTGGATTAACGTCATTCTTCAACCAAAGATTTATCAAGGCTATCCAAGGTCTTCCCCTCGGCCAAATTACCACGATATGGAACATATTTTGTAATGAAATCACTGAAAACTACCTTGGAAATTATATATTGCAAGGATCAGAAGCAGCTCCAGGAAATAAACTGAATGCAAAGGAAAAATCCTCGCCACAGTTAGCCTTGTGGAAAAAATTGGAATATGTTTCAAGTATCTTCTGTTCGTTTCTTCTCCACACGAGTTTTGTGGGGATCGGAGAACATCGAAAGGGAAAAACCTCTTTATCCGTAGTGGGAACATTGTTAAGTCGTACAGTACAGGAAGTGCTCGACCCTATGATAGAGTTTTCATCAAAAGTTCAGCATGACAGAGTAAAAGAATCGGCTTGTTTCTCTATTTTGTTGTTACAACGTGCCCTAGGAGATCTAGCACTGTTCTTGGGAGATTTTAAAATTGCCAACTTAGACAATGAAACAACCAGATTACTACCATCAGTCGAGTGGATAGATGCGATGAATGATTTTGTTCCCGGAAAGCGGAACAAAGAAATTCTCGCCGTTCTCTCTAAAGACAAAGGAAGACTTCGTTATCTTATGAGTGCTCTATGTATTCAGAGCATCAGATATGCTTTACTCCACGAGAACAAAACAGCAGAGAAAAAGGGTGAAGGGAATGAGCTCAAGAGATTGGTGTCTTGTGTTTGCAGTTCCGTCAACGACACTCTTTGGTGTAGTGCATCTTGGGATAGACAAGAGCGGTCAATCAGTCAAGAGAATGCCCTAGTTGCATTATGGGATTTGATCAGCAAACATGCCGCGGTGATTCTTCCTCTATGTACCGCTGACCAACAATTACAGATTGCTCATTTGATCATTAGGACTATAACTCAGGAGACGCAAGATGCGCGACAAACACAACTAGGGTGTATTACCTTGCTTGATGTATCGATGGAATTGATTCAAAATGCGAGCTTTCACGAAATGCTTGCCATGCAGTCCGGTACAGTCTGTGCCTTTTGGGTTCGCCTTAGACATGCTATCGATTCTGGTGAATGTAGTGCTAATAGTCTAGAAGAGAGACTGATGAAAGCTTTATCCAGTATTGCAACGTTAGCCGCCTCAGACGATGGAATTTTGACAGAAACGTGTGATGATCACAGCGCCAATAATGGCGAACAAGAAGAAAGTATTGAGGATTCAGAGGGCGAACAAAGTGCGGAGGAAAGTTCCGACGACGATAAAGGCGAGAATGAAGAGAGCAGAGCAAACGAAACTCGTGAGAGTGACAAACCACGAGGGGATAACTTGCAACCCTTCCATTCTCTCTGTTTTGACATAACTAAGATATCCAGTAGTGTTTTATCTGCTGAAGTGCACAGTACCAACTGGTCGGCATCAGCTGAAAAGATCAAGCAATATATAAGGGTTCTGGGTTTCCTTCCTCTTGATTGGCTGTCTAATGAGAACCATGTTCGCTGTTTGATTGGCCTGTTCACTTGTGACGTGCTTCTGGGTTCTAACGTTTTCCAGGATTGCTCTCCTGACACGTTAAAGCCTCTCTCACTGAGCCGCCATCTCCTTAGTGTTCTATTCGATGGCAGCGTCACAAGACGAAAGTTTGTAGCGCACCATGTGCTCGACTTGGATTCGCTACACTCTTGGCTTATTGGTTCGGCTACCAGACTATGGCGACAGAAATGCACGAATCCAGCTACTGTGACTGCTATGAACCTTATGGTAAGGCAAACCAGAGATCTTTTCTTCTCTACATTCAAGTACCTCCTCAGAGCTCCCTTCCAAACAGTCAACGCAGTTCAGAAGACTACAGAGACGTTAACAGATGAATTACAGGCTTTCTCAGCAGAAGTGCGGGATGCGTCAGTAGACTCTTTGGAAAAATCCCTCACCTCTTATCATGTAGTTTCAGTCGTTGTAGAGGGAATTTTGGCGCTGTGTAAAGAAGTTGTTAACAGCAAGATAACCTCAAACAAGATGATCAGGATTTCGTCCGACGTGGTGATAAAACTTGGCCCAGTTCTACTTGAGCTACTGAGAGGAATTGTTCAAAAGTTACGGCGGAAGCCGAGAATTAAGCACTCAGATGCTCAGAAAAGCACTTTATCTGATTTTTTCTTTCAATGGCCGGACTATATTGACTCGTTCACTTCCTTGCTTCATGTTTACTCCGTTTCCGAACAGTCCAGAAAATTGATTCGTGTAAATGAAGCTTTCAAGCAGTGTGAATGGCAAGAAGTATTTGACGTCATGTTAGCAGCAGTCGTGCATAATGTTTTCGAGACGGACCAGATGGAGTCAGCACTTCCAGCGAATGGGCACAAGGATCGAATCGTGCGTGCCTGTCTGCGTTTCCTCAGAGTGGTGTGTATATCCTGTGTAGCGTTACATTTACCGGTAGATTTTCGCGTTCGACTTCTGGCTTCGACGCTCTATTTTTTGAGGAAGCTGGAACAAAATAAGAAAAATTGCACTGAAGATCGTAAAAAAGATGACCGCCTTAGTGATATGAAGAGTGGCCTCCATCAGAGTGAAAAGATAGAAAAGTGTATAAGAGAGCAAGGCAGATTTTCTGATAGTGAAAGCATTACAGAGGAGGGGTATCTTCTGGCTGTGTCACTGCTCGAAGGATGTGATCCTGGTCTTCTACCGGAACTACTCGAAGGATTAGGAGACGAAATTAATATAAAGAACATTGGTAATGCTTGTTTTGAACGACTAACTGTTGTTCTCCGCGTTTGGCTTCGTCTGTTGAGTGGACGATTTACCAAAGACAGAAGAAAGGAACTTCGCCCAATATTACCCAAGACTTTACTGACAGTACAGTCCATATTACAAGAATTAAAAAGTGAAAATCTCATGGTTGTCAAACTGGCTACTGAGGTCATGGAAAAAATTCTCTCCCTTGGAAAGGGGATGGTTCTTCCCCATAACGCAGTCCTTGTCCTGCACAGTGGTTTAATCAAGCTTGTAGCTAATGACAAGAGTTTCCCACGACTGTTCGAGTCCCAGTACTCTTTATTGAGATGTGATGTTCAAAATGACGCTGCTGTGGAAAGAAATGTGGATAAAACGTCAGCGGAACGACTGAAACCGATTGAACTAGTGCAAAGCGCACAGAAGATGGCAAGATTATATCAAGAAATATCTACGCATAAAATCGCCTTTTCCAAGTATTCTCCGTATATGATCGCTGACTACATTCATGGCGTTCAAACTGTTGCTGTTCCATCGGTTATCAGGGATGCTCTCACTTCTGGTGTTTACTGCTTGTTCGAATTGTGTGGTGAGCATGAACTGTCGCTGTTACACGCTGTCCTGGAGAAAGGATCGCGGGAGCTTTTCCATTCCTTGCACGCGGACTACACCAAATATCACAAGTTCAAAGGCAAAAGACTGGGAGGCAAATGA

Transcript

rna-pdam_00016186

atttttaaatCGATCTGATTGTCCTTAAGAACGAGATTCTCAACTTAAATATGAAGTCAAGCTTAAGAGGGATTTATTCCAAGTTAAAGGACTCTGCAGTAGCATGGGATGAGAGGCTGTCATTAGCAAGGCATGCTTGGGACTCTAAGGATTGTGTGATTCCAAATAAGCAGCAAGTTCTCTTTGACTGGATCATCCAAGAAATTACTCTTGGGTATAAGAAAGGAGCGAAgtcTGTTGATCACGAGCTTTTGAGTGGACTTTGGCTGCTGCTTCTTCATACTCTCCAGAGTCAAGAAGATCTTTATAGTCCAGGGAATCTGCCAATCACTCTAAAATCTCAATTTATACAGgtaTTTACAGATGCATTCATGTTTAAAGATTCTGTACAAAATGGAGCATCAATCAGCACCCCTATCAGCTGTTGCTATGCCATCATGTCTACACCTCACCTCAGTGCATCTATGGTGGCcaaatttgaaagttatGCATCCTTCCTTTCAGCCTTGGTGACCTTGTATCTCCAAATATGCAGTGAAAGATCAGAAGAGCTTCACTTACTCTTAGAGATTTGCttacaaaaatatcttttggTGCAGAGACAACAAGCAAATCAGCGAAAGGTGTTCACGTCCATGTGCCACCAACTTCTAGAACCATTAATCAAACTGCGTCACATGTTGAAAGGCTTTTCTAAGATCTGTCAACCTATGGTGCTGTGTGGAGATCAACAACCTGAAGATAGTTGGCAAAttggaaaaatggaaaagatcTCTTGCTTGTTGGAGTTAGCAGTAACCAGATGCCTCTTTCATAAAGATCACATGGCAGAGTATCCTCAGGCTTTCAGAGGccaagaggaaaaacaaactgaatcTGATGAACCTGCTAACAAGAAAGCAAGAATTTTTAGTTATCCCAagcttttgtttgaaaagataTGGGAGATGGTGGAATCACAAGCAACAGCAGATGTTGACACAAAAGAGGCAGCTTTGGatattcttccttttttataCAAGGAATTTATCAAATCAAATAGAAAACCAAACTGTTCTGCCTCTCCTGTGGAGTTTGCCTTTTTCACAGAAATGTGTCAGTTGCTTGGTGTGTTGAATGGAAACAACATAACCCCCAGTATGTTCACCTTACTTCATCAATTGCTGGAAAGCATCCTGCACTATGATATTTACCAGGTATCAGATGACAACCAGAATGGCTTGGTACAATTCAACTCTTATGACAGTTTGGTCAAGATTGTAATTAAGACAGAGGAACCAGGCAAAGCTGTATTCCAGTGTCTTGATGTTCTGCTAAAACTGAATCACTCCTTGGTTGAGCCACACTTAGATGTTATTTGGAAAATGCTGTGGAGAACGGAATGCAGTGCTGGTGATTCACACAACTCTTTGATGAATTCTCTCATCTCCACGTATGTTAAACTGCGACAGTTTGATAAACTTGTTTTGGCAATTCTGGATTCTTTGAGAAGTTTGAACCCTTCAAGTTCTGGATTAACGTCATTCTTCAACCAAAGATTTATCAAGGCTATCCAAGGTCTTCCCCTCGGCCAAATTACCACGATATGGAAcatattttgtaatgaaatcACTGAAAACTACCTTGGAAATTATATATTGCAAGGATCAGAAGCAGCTCCAGGAAATAAACTgaatgcaaaggaaaaatcctCGCCACAGTTAGCCTtgtggaaaaaattggaatatgTTTCAAGTATCTTCTGTTCGTTTCTTCTCCACACGAGTTTTGTGGGGATCGGAGAACATCGAAAGGGAAAAACCTCTTTATCCGTAGTGGGAACATTGTTAAGTCGTACAGTACAGGAAGTGCTCGACCCTATGATAgagttttcatcaaaagttCAGCATGACAGAGTAAAAGAATCGGCTTGTTTCTCTATTTTGTTGTTACAACGTGCCCTAGGAGATCTAGCACTGTTCTTgggagattttaaaattgccaaCTTAGACAATGAAACAACCAGATTACTACCATCAGTCGAGTGGATAGATGCGATGAATGATTTTGTTCCCGGAAAGCGGAACAAAGAAATTCTCGCCGTTCTCTCTAAAGACAAAGGAAGACTTCGTTATCTTATGAGTGCTCTATGTATTCAGAGCATCAGATATGCTTTACTCCACGAGAACAAAACAGCAGAGAAAAAGGGTGAAGGGAATGAGCTCAAGAGATTGGTGTCTTGTGTTTGCAGTTCCGTCAACGACACTCTTTGGTGTAGTGCATCTTGGGATAGACAAGAGCGGTCAATCAGTCAAGAGAATGCCCTAGTTGCATTATGGGATTTGATCAGCAAACATGCCGCGGTGATTCTTCCTCTATGTACCGCTGACCAACAATTACAGATTGCTCATTTGATCATTAGGACTATAACTCAGGAGACGCAAGATGCGCGACAAACACAACTAGGgtGTATTACCTTGCTTGATGTATCGATGGAATTGATTCAAAATGCGAGCTTTCACGAAATGCTTGCCATGCAGTCCGGTACAGTCTGTGCCTTTTGGGTTCGCCTTAGACATGCTATCGATTCTGGTGAATGTAGTGCTAATAGTCTAGAAGAGAGACTGATGAAAGCTTTATCCAGTATTGCAACGTTAGCCGCCTCAGACGATGGAATTTTGACAGAAACGTGTGATGATCACAGCGCCAATAATGGCGAACAAGAAGAAAGTATTGAGGATTCAGAGGGCGAACAAAGTGCGGAGGAAAGTTCCGACGACGATAAAGGCGAGAATGAAGAGAGCAGAGCAAACGAAACTCGTGAGAGTGACAAACCACGAGGGGATAACTTGCAACCCTTCCATTCTCTCTGTTTTGACATAACTAAGATATCCAGTAGTGTTTTATCTGCTGAAGTGCACAGTACCAACTGGTCGGCATCAGCTGAAAAGATCAAGCAATATATAAGGGTTCTGGGTTTCCTTCCTCTTGATTGGCTGTCTAATGAGAACCATGTTCGCTGTTTGATTGGCCTGTTCACTTGTGACGTGCTTCTGGGTTCTAACGTTTTCCAGGATTGCTCTCCTGACACGTTAAAGCCTCTCTCACTGAGCCGCCATCTCCTTAGTGTTCTATTCGATGGCAGCGTCACAAGACGAAAGTTTGTAGCGCACCATGTGCTCGACTTGGATTCGCTACACTCTTGGCTTATTGGTTCGGCTACCAGACTATGGCGACAGAAATGCACGAATCCAGCTACTGTGACTGCTATGAACCTTATGGTAAGGCAAACCAGAGATCTTTTCTTCTCTACATTCAAGTACCTCCTCAGAGCTCCCTTCCAAACAGTCAACGCAGTTCAGAAGACTACAGAGACGTTAACAGATGAATTACAGGCTTTCTCAGCAGAAGTGCGGGATGCGTCAGTAGACTCTTTGGAAAAATCCCTCACCTCTTATCATGTAGTTTCAGTCGTTGTAGAGGGAATTTTGGCGCTGTGTAAAGAAGTTGTTAACAGCAAGATAACCTCAAACAAGATGATCAGGATTTCGTCCGACGTGGTGATAAAACTTGGCCCAGTTCTACTTGAGCTACTGAGAGGAATTGTTCAAAAGTTACGGCGGAAGCCGAGAATTAAGCACTCAGATGCTCAGAAAAGCACTTTatctgattttttctttcaatggcCGGACTATATTGACTCGTTCACTTCCTTGCTTCATGTTTACTCCGTTTCCGAACAGTCCAGAAAATTGATTCGTGTAAATGAAGCTTTCAAGCAGTGTGAATGGCAAGAAGTATTTGACGTCATGTTAGCAGCAGTCGTGCATAATGTTTTCGAGACGGACCAGATGGAGTCAGCACTTCCAGCGAATGGGCACAAGGATCGAATCGTGCGTGCCTGTCTGCGTTTCCTCAGAGTGGTGTGTATATCCTGTGTAGCGTTACATTTACCGGTAGATTTTCGCGTTCGACTTCTGGCTTCGACGCTCTATTTTTTGAGGAAGCTggaacaaaataagaaaaattgcacTGAAGATCGTAAAAAAGATGACCGCCTTAGTGATATGAAGAGTGGCCTCCATCAGAGTGAAAAGATAGAAAAGTGTATAAGAGAGCAAGGCAGATTTTCTGATAGTGAAAGCATTACAGAGGAGGGGTATCTTCTGGCTGTGTCACTGCTCGAAGGATGTGATCCTGGTCTTCTACCGGAACTACTCGAAGGATTAGGAGACGAAATTaatatAAAGAACATTGGTAATGCTTGTTTTGAACGACTAACTGTTGTTCTCCGCGTTTGGCTTCGTCTGTTGAGTGGACGATTTACCAAAGACAGAAGAAAGGAACTTCGCCCAATATTACCCAAGACTTTACTGACAGTACAGTCCATAttacaagaattaaaaagtgaaaatctcATGGTTGTCAAACTGGCTACTGAGGTCATGGAAAAAATTCTCTCCCTTGGAAAGGGGATGGTTCTTCCCCATAACGCAGTCCTTGTCCTGCACAGTGGTTTAATCAAGCTTGTAGCTAATGACAAGAGTTTCCCACGACTGTTCGAGTCCCAGTACTCTTTATTGAGATGTGATGTTCAAAATGACGCTGCTGTGGAAAGAAATGTGGATAAAACGTCAGCGGAACGACTGAAACCGATTGAACTAGTGCAAAGCGCACAGAAGATGGCAAGattataTCAAGAAATATCTACGCATAAAATCGCCTTTTCCAAGTATTCTCCGTATATGATCGCTGACTACATTCATGGCGTTCAAACTGTTGCTGTTCCATCGGTTATCAGGGATGCTCTCACTTCTGGTGTTTACTGCTTGTTCGAATTGTGTGGTGAGCATGAACTGTCGCTGTTACACGCTGTCCTGGAGAAAGGATCGCGGGAGCTTTTCCATTCCTTGCACGCGGACTACACCAAATATCACAAGTTCAAAGGCAAAAGACTGGGAggcaaatgaaacaaagtaaatagCTGATGAGGGAGACAGCGTCAGAACATTTTGAGTCATTTTGAATGTCACAGAGAATGGGCTTAcctatttgaaaagaattctCCACTTAATCATACCCCCTCACTCGTCGAGGGAAAGTGGATCGGGAGATGTAGGTCGGGCGTATCCCTTTTCAACCTTAcagatcgctttcatattcactcTTCACACtgttctttttaaatcttccTAAAGTACTAACATGAGGAATTTGTTTCACGTTCTTAAATTGGTCAAGTAcgatactgtgaggagaaat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0V0U5	Unhealthy ribosome biogenesis protein 2 homolog OS=Danio rerio OX=7955 GN=urb2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002918 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10441 all species →	Urb2	Urb2/Npa2 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018849 all species →	Domain	Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal	Interproscan
IPR052609 all species →	Family	Ribosome Biogenesis Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15682 all species →	UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14862	URB2; nucleolar pre-ribosomal-associated protein 2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.