Gene detail

Detailed information of RMX39357.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3838:100535...109418
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00017914

TGAGCCGAGAGAAGAAGACCGAAGATATCACGCTAATTCAATAACTGATTGGAAAGAAGGCCTTTACAGTCCTCCTGCCTTGTTGAATTAAGTTGTTTGCTTAGAGCGGTGTATGTAGCGTCAAAAGTCTTAAGAGATACCTGCAAATCCAAGCGGTAGCACGACCAGTTTCGAAACAATAGCGTTGTTGACGTTTTAGCGAACATGTCCTCCCGGAGTTCGTTCAAAGTACCTCGTTCCTCTAAGTTTAAGCATGTATTCGGGAGTCCTTTCAAGAAAGATAAATGTTACGAAGCCATCAGGTTATCGACGAAATCGACGGATGGAGGTAGTCATTGTGCAGTAAATCCTAAATTCATTGCAGTCGTGGTTGAATCGAGTGGCGGGGGAACATTCCTTGTTCTACCGCTCGAACAGGTTGGTCGTGTTCCTATAGATGCTCCAAAAGTAACTGGACATGGGCGACCTGTTCTTGATATTCAATGGAACCCTTTTAATGACCAACAAATAGCTTCCAGTGCTGAGGATGGATCAATCAAAGTATGGCATATTCCTGAAGATGGCCTATCAATGGACCTTGATGAACATTTAGTTGATTTAAGGGGGCACTCTCGTAAGGTCAATATTATTCGATGGCATCCTTGTGCTGAAGGGGTCATTGCTAGTGCTGGGTATGACAATGAAGTTAGAATTTGGGATATTGTGGATGACAGAGAAGCTGCAACAATACTCAAGGGACATCctgatacaattttttcactgtCTTTCAATTACAATGGTAGTTTACTGGCTTCCACTTGTAAAGACAAGAAGATACGAGTTATAGATCCCAGAGCTGGAAGACTTGCAGCGcACGGATTGGGACACCCTGGCAATAAGAGCTCTCATGTGGTTTTTCTTGGTGATATGAACATGCTCTTTACAACAGGATTCTCAAGAATGAACGAGAGACAATTAGCCATCTGGGATGTgagaaatttgaaaaaagctaTCAAAATTGATAGTGTGGATTCTTCATCAGGTGTTCTGCTCCCCTATTATGATCACGACACAAggattgtttttcttgctggAAAGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTATTTTCTTTCCAGGGTGATGGCAATATCAGGTACTATGAAGTATCAGAATCTGAGCCATACTTCACCTTCCTAAACGAGTACCGTAGTTCATCACCTCAACGTGGCTTTGGTGTCATGCCAAAGAGAGGTGTTGATGTCACTGCATGTGAGATTTATAGGTTTTATAAGCTGCACAACAACAACTTTGTGGAACCAATTGCCATGACTGTTCCAAGAAGGcaATCCAGTGTACTTCAGCGAGACTTATATCCATTGACTCCATCAGATAAACCTTCCATGAGGGCTCGTGAATGGATTGACCAAGGACTTAATAGAAATCCAAACCTCATGGACCTCCTGAAAAACTTTCCTCTTTTGGATGGAGAGGTAGAGACCCGTGATATGAGAACAAGAGAACAGCGAGAGAGGGAGGACAGGCGTGCATCAACTGGAAGAGCAGAATACCAGGCTGTCAGAAGTCCAACTTCTGAATCGCCACCAAAGTCACCACCAAAGTCGCCAGTAAGAGTTAGCAGTAGAAATGAAGAACAACGTTATCCAACTTCACCTGAAACCAACCATGTGTCTACCAGAGGACAGAATGGAGAGAGTGAAGTTCAGTATGTTCGAGCAACTGAAGTGTCAAGTAAGCCAGAAACCAAACAGAGAGACCCAATCCAGGTCACAGCAAAAGCAGTAGATAATGGTAGAGGgtcttctttggaaaaaagacGACCAAGTGGAGGAGGTAGAAGGCGCTCAGGGGATTTTGCAAACTGGGATATTGACACTttGAGACTTGCTTACAGTGATCAGAGAGAAGAGATAGTCTTCCTTGAAACTCAACTTAGAGCCAAAGATGCAAAAATTACCcagcttgaaaaagaaaaccaatacCTAAGAGAAAAAACGCAGAGGTATTAGTTAAACGAAAAGTGGCACACTCACAGACAAGCAGCTTTTcatctaacttttttttagacCTAGAAGATCACATGTAATTTATGTGCTACATTGTGAGAGTTTATTTCTGTGAAATACAGAATTCCAAGGTATATTTCTGCTAAGTGTGTAATTTTATCGTTATTTATGTGTATGTTTTAGGAAACGCTTGCTATTTGTCGTAAGTTttatctaagaaaaaaagaaaagcaaactattttagatttattttaacaaaggCAGTGAAGCACAATCATTAGTAGGCTTATTAGTAAGGTCAAGTAATAATGATGCAAATGTACCTCTGTAAATTGTAGTTTAAGGTAATTCTTGAAGATTATGCAGTTGTAATAAGGTCCAGAgttattttcttaatatttgaATATCGGACGTCTTGAATTTATTCTGGTGTAAAGAAGAACTCTAACGGGTGATGATTTTGGTTCGCTGGGAATTGAGAGTACTATCAACTTGATGTTTTTTAGAGCAGACCAACTTTTGGTGGTGGGGGAGGGATGGGTTGTTGGGTCATTTTTATGAGGTGGGGTAGTGGGTAGTTTGGAAATTATAATCTTCCGAGCAAATTTGAGCGAAAAATGTTGGGATACAGGTTTTACATGTGCCTGTAGTAAAGGTGTGGTGTTCTTTTCCTTCGGATAAATTGACCATATTCCTGACTAATATTGAGCATGAAGTACTGTATAGAAATGCGCATATCGTTTAATCACCCTAACCCGTtcacttccagaagtgatgagcatttaacttctccctataatttccaaacattatccagcaaaaaggcAATGATAATACTCAAAATGATCAGttagaagttgttaccttgatctaacgCCATAACcttgtaactaattttcaaggaaatgtgctGTAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BR76	Coronin-1B OS=Homo sapiens OX=9606 GN=CORO1B PE=1 SV=1
Q9WUM3	Coronin-1B OS=Mus musculus OX=10090 GN=Coro1b PE=1 SV=1
Q8C0P5	Coronin-2A OS=Mus musculus OX=10090 GN=Coro2a PE=2 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08953 all species →	DUF1899	Domain of unknown function (DUF1899)	Repeat	Interproscan
PF16300 all species →	WD40_4	Type of WD40 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR015505 all species →	Family	Coronin	Interproscan
IPR015048 all species →	Domain	Domain of unknown function DUF1899	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10856 all species →	CORONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13887	CORO2; coronin-2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.