Gene detail

Detailed information of RMX39611.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3808:460859...469268
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004005

gtTTGGTTGTGGGATTGTTTAGTAGTACTCATCACATTTGATCTGTCTTGGATTTTATTCCTGCAATGAGGCGAACAACCCTGGGCCCTCTTAACATAGGAAATCAGAGCAGACCGGTCGCTCGGGAGAAGAAAACTTCTCTTGGATCGAGAGCTTCAATAGGAAATAGGACATCACTCGGTAGACCTTCGACTTCGGGGAGACCTTCGCTCGCTGGTGCAAGATCATCAGCGACTGGAAGGAGACCATCTAGCCAATATGGGAGAGAAAACTGTGTTCAGATGAAAGATCCGCGGCCCCTCTCCGACAGAGGATACCAGCAAAAAATGATTAGATATCTTATGGAGTTCCTGACAGAGTTTCATTATCCACATCAAATTTCCATGAGAATTCTGAGTGCTCCTTCTACAAAAGAGTTCTGCAACATTTTCCAGtttctttacaagtACATAAAGGCAGACACtcaaaaaaacacttcactgGAATCCAAACCAGCAGAGGAGATCCCAAGGATTTTCAAGATGTTAGGTTATCcatttacaatttcaaagaGTAACCTGCACTCTGTTGGAAGTCCTCATGCTTGGCCCATGGTACTCGGTGCACTATGCTGGCTTATTGAACTTATCAAGCATGCCATGAGTGTTGGTCAGGATATTGAAGGCCATGTTCTGTTCCCTGAGGACAATTACAGAGCTGGTGAAGAATACCAAGATGGGCCACAACCTGAAGACAAGTACTTTTTTAGGTATTTGGAGAAAAGTTATGCTGCTTTCATGATGGGGACAGAACTTGATGAACTGGGAGAATTTGACAATGAATTTATTGATAGCATAAgaTCAAGAAATGCTGTTCTGCTTGAAGGAAATGAAGACCTGATGAGAGATAACCTAATGTTAGAGGAAGAATTGAATGCCCTGAAAAATGATTCTTCGCGTCTCCAAACGTTAGCTGAAAGAAAGATAACATTAACTTCTGACAAGGAAAAGTTTCAGAACTACCTAGGAGACTTGGGGAAGAGTACAAAACAGTTGGAGGAAAAGAATGAGCAGCTTGTCGAGGAACTAAGAGGACTAAAAGTGGAACAAAATGCCATCACCCAAGAAAATGCACGGCTTCAGCAAACTCTGAACAACCAGGAGCTGAGTTCTGCAGATGTTGAAAGAATGAagcatgagaaaaaagaactacAGAAGGCCATTGAACAACAAGAAAGGGAAAGAGATTATTTTAACCAGCAGATCTGGGAAAAAGAGATGCAATTTGCGAAAAAACATGAAGAGACTGAGAAGCATGTACGAGAATATAATGAAATGGCAAGGAACTTGAAATTGATTCCACCCTCAGCAGAAAATGCAAATGGTATTGACTTTGAGATGCACTTCAATCCACACTCACAAAGACCTGATCAGAGAGCTCACATGGACTTTAAGGGAACCATAAAGCCTGCCCTTCTTCATCTCAAACAACAAATCAGTGAGAAGAGTCGTACCACTCAGTCTCAGGTCATCACTGAAGAGGAAGCATTTGATCAGataaGTGAGATGGTGGCAGACAAACAAGAAGAGGTGACAGCTCTGGAGAGCAAACTGCAAGTATTGGACAAGGAGTTAGATTGGAAAAAGGAGATCATGGCAAAAGAGTACCAGAAAACCACTGGAGCTTCACAGGGTTTGGAGGAAAGTGTCCAACAGATGAGAGAGAAGGTGTTAGAATCTGAGGAGGCAGTGGAAGACAAAGAAAGCACcctgaaggaaataaaactcaGAGTGGAGCAAAGTGTTGTTGAGCGACagaaggagaaagaagaatATTCAGATTTTATACTGAAGGCAAGTCATATGATCATGGAACACAAGACTCTTATTCAGaATCGAACACATGAGCTTCTGAAGCAAGCAGAAGAAATTTATGagcaaacaaaacagcttgagATTCCTAAAACATCCATACATATTCCACAGGAAAATggggaagaaaattaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76I89	Kinetochore protein NDC80 homolog OS=Gallus gallus OX=9031 GN=NDC80 PE=1 SV=1
Q4R630	Kinetochore protein NDC80 homolog OS=Macaca fascicularis OX=9541 GN=NDC80 PE=2 SV=1
O14777	Kinetochore protein NDC80 homolog OS=Homo sapiens OX=9606 GN=NDC80 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03801 all species →	Ndc80_HEC	HEC/Ndc80p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038273 all species →	Homologous_superfamily	Ndc80 domain superfamily	Interproscan
IPR005550 all species →	Family	Kinetochore protein Ndc80	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10643 all species →	KINETOCHORE PROTEIN NDC80	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031262 all species →	Cellular Component	Ndc80 complex	Interproscan
GO:0051315 all species →	Biological Process	attachment of mitotic spindle microtubules to kinetochore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11547	NDC80, HEC1, TID3; kinetochore protein NDC80	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.