Gene detail

Detailed information of RMX39710.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3803:326029...332378
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00008064

GGAACACTTGGAATATGGCGTCACAAGTCGTTGTAGAAAGTGAGGGTTCTAAATCAACTGCGATGGAAGGCGAAACTAGTGCAAGCAAGAGTTCTGTCTTAgatgaaaacaatgaattaGAGGCTGGTCCTTCATCGTCGTCTTCCTCCACATCAGCCGCTGATAAACGAGCGGAAAGAATGAAGAGATTGAGAGAGCTTCATCTAAGAAGGAATGAAGCACGTAAATTAAATCATCAAGAAGTGGCAGAAGAAGATAGGAGAAAGAAGCTACCTAAAAACTGGGAAGCTGTGCAGCGAAGAGTAGAATGGGAgaacaaagaagaagaggCTAAAAAGGAAGCTGATTCACGGGGAGAAGATTATGACAGAGTAAAGTTGCTTGAGATATCTGCAGAGGATGCTGATAGATTtgagagaaagaggaaaaagaagaaccCTGATCAAGGTTTTTCAGATTTTGCTGCAGCTCAATACAGACAATACCAACGCCTCACCAAGCAAATGAAACCTTCAAATGAAGATTACAAGAAAGAGGTTGAGCAAAATGTAGTTCTTATTAAGTTAATGAAGTACATGCTAGTGAAAGAAGTAGGGGAAGCCATGTTTCCCACTGTAGATGATGTCAGCTATGGAGGGCAAGGAAAAGTTCCAAAGGCTGCTGTAGACAGAATGGTTGCAGACTTAGAAAAACAGATTGACAAACGAGAAAAGTACAGCCGAAGAAGAGCTCACCTGGATGAAGAAGATATAGATTACATCAATGAACGCAATATGAAATTCAACAAGAAACTGGCAAGGTTCTATGATCCATTCACTGctgaaatcaaacagaacCTAGAAAGAGGCACTGCAATTTAGGCAGTTAATTACTAAATTCATTATCTTCTTTGAGAactaaatttcagaaaaatgtatgtagcagctagaaaGGAGATCTGAAAATCAGATATCAGCAGTAGAGGGTTGGTAGTTCAAGTGATGTTTCAATTCAGAGTGCATGTGTTGTTTCAATATTTGGCTTTCAGTCACTCTTGAGATAGTAGGAATCTTATAAAAAAGTGACTTCccatttattttgtagaaAAGTAGTGCTGACAGTTGTACAGTGGACATGGAAATTAGGCAGGGGTCAAAACGTCATTTTTTGtgagatttttaaaagatgtttgGGTCAGCTGCATGTGCAGAAGGTTATAACAGAATTGtgatgtcatttatttttgaggTTAGTGTACTTCAAGTTAATGTTGCATGATTTATGTTATTGATTATTAATTTACCATTTAAGtgtacatgattttttttatcaaactttcCCGCATACTGAAGTCAATGTACTTCACCTTTATGTTGCATGATTCACGTTTTTGGTTATGTAATTTACTGCTTAAGTATGAgtgatttttatcaaacacTCCTTATACTATGGtatttaagtttgaaaatgtggGTGAAAACTGGATTCAGGCTTGCACGTCCATATCCTTGGATATTTCCCACTGAATGCACAACAATCTCTTGTTTAAGGTCACCTTTAATCACATAGCATTTCAACGTAATAATACGACAGATGACAAATCCTGTGTCAAGTGAACACCCGTGGACCTTAGTATAAGGTTTCCTCCTAGTATAGAGTTTGGACTATTATGTTGATGAGATAAATATTAATAGGTGAAAGAGATTTCTTGAATGAATGGAGTATAACCTTAAACTGTAAtctataaaaaataaagctcGAATCTCTTAATTAAAGAAAGGGCTTAAGTTCAGAGCACTTTGATGGTTTTCTACTAAAAACAAGTCTgtgttttaataaataatagaCTGTTACAGGACTTGAGTTGTTGTCTGCTTGATGCAAGGTGTGCACTTGATAGAGTCTGCAGTGCAGGTTTCACTGTATTACTTTCTCAACAAACTTGCAAGGACTTTAATCTATGGTCAACTCAAATCCATCTTGTGGAtagataaacatgtaacttacACCTTTGAGGTCAGAGATGAAATGAGatattcaaaaagaaaacttttaattcgCATTGAACAAGCTGATCTTTAAAACGTAAGATTATAGATGAATTGAAGTTCAAAGTAAAAGGTTAGACCTTTACAACAGTTAAATACTGTtggttttccttgttttcctGAAAGTTTTAGGGGGGCCGCAGGTTTTTATGATTGCTCCTCAGTTAAGTCCAACATCTTTATATCATTCCATTTTCATGGTAAGTATGGCATTAATTTGTGCATAATTTACATCACTGACTGAGATATGCAATGACGCACACTCACCTATGCGATCAAGTGATTAAACTAGTGATCTGTAAAATCAGAACAAGTTATCAAATCATGTGACTCGCTTTGGcatgtaataaaaatgaagagtGGGAGTTGTGTTAGATCTTTTGACACCTAAAGAGGCAAAAAACACACATCCTACTAGTGCATGCCAATCACTAATTATGTAAGATGTCTGTGTGCCATCTGCtgattttccttgaaatggCAAAAGGGTTTAGTTGGTTACAGCTCTGCAAGGAACTTCTAGCTGGCTTGTAAGTGTGGGCACACACAAGattgacaacaaaaatttgaaacttatgTGACACTAATAATAGCTAAAACTAATAGGGTTAGGCAAGAGTGTGTCATAATATCACTGGGACAACACTGGCATGTACCAGAGTCAATTTAGACACTAGATACCCTGAAACCAAATTCCcaatatgaaaaaaagcaaatataaCATTGAACTTAGTAATCTTGATTTAATAATTAACCACTTTGCCTGAAATGGTGACATGCAGGTTTGTAATTACCACTACACTTCGGGTTTGCATGAACTACTGCACGTAAAGTTCTCGTTGCCTTGGCAATATGGCGGCCAGTGCCCTCTCTTTCTGTCACAATGCTCCATTATAACTTTGAAGTTGAAACTTACAGTAAGAACTGCCAACGCTAAATAGCAGTCATCAGAGTAAAAATGCGGATTTCTATTGAAGAAAAGCATCTAGAAACTTCCACCTTTTTGGATAAATCTCGAAGTTATCGAAGTGCTCGGTTAATATCCGAAATTTCCAAATACAACCTTGGTCAAAAGCTGCAAAAGAAATCCTCTCCAAAATGCGAAAGCCACCTTTCGACTTGTATTCGTTGTCAATACCTTGACATGATCTTTGCAGTTTCAACTCTTCCTCGCTTGTTTTCCCGCTGAAACGTGGTCAACATCTTCAGCAACCTTTCTCTTCCTCGAGGACGAAGGATCGCTTGAGGAAAAATCTTTCTCAAAATCATACTCATGTCCATACGAAAAGTCCAGTTCGTTAAGAATTTGACATTCCTCCATGTAAGAGGcaaaaacagtttctttaatcCACCGGGAGAGCTCGTCTTCCATTGCATTTATATACTAAATTTGAACCTTCACGATGAGTCGGCGACGAGGAAATTAAATAATCCGCTGACAATACAAACCGGATGTTTTCATCCAATCACAAACCCTCAAAATTGGTCGCATGGGATTTTCTTCCTTCGTTTTGAAGACTATTTTTAGCAGATTACACcccaaaataaatgtaacagaTCAagggggaaaaaaagaagaaaaattgtgatatAAAGTTTCTCTGATTCCATCTTTCTCGTGTGCGATTGGTATTGAATTCAACAAGGGATGTGCGAGTAGAGGCAACAAATTCAACTCGATCGCCCTGTGTCGTTTTTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D198	Pre-mRNA-splicing factor SYF2 OS=Mus musculus OX=10090 GN=Syf2 PE=2 SV=1
Q4QRB2	Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus OX=10116 GN=Syf2 PE=2 SV=1
O95926	Pre-mRNA-splicing factor SYF2 OS=Homo sapiens OX=9606 GN=SYF2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08231 all species →	SYF2	SYF2 splicing factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013260 all species →	Family	mRNA splicing factor SYF2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13264 all species →	GCIP-INTERACTING PROTEIN P29	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12868	SYF2; pre-mRNA-splicing factor SYF2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.