Gene detail

Detailed information of RMX39892.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3781:27807...41131
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00018495

ATGTTCCCTCCACGAAGAAGATGCAGAAAACTGCTGGTCTGGATTGCTCTCGCTGTTGTTGCACAAATAATGTTTACCTTATTCCTGCACGGAGAGTTTAATTTCGCGCCAATCGAGCGCACGAGGACGACAAAGAGAATTACAAGGAGACAGTCACGTCTACGACTTCAGAGTCAAGGTGGCGATCGTTTGGAAGAAGATCATAAGTTTATCGCTCGTTCAAAGCTAGAACATGCTCGTGGTAAGGACGAGGGTACAGAATATGTCGAAAGTTTGGTAGTTAATGAAATTAAATCAACAGATTTTCCGCGAATGTCTGGAAGGAATCTAAAGAACCCTTTGCGTGTCAACAGACGAAATCAATCCATTAACCTCTCAACAGCGATAAGCGGCCTTCAAGTAGTCAAAGAAAGAGAAATATTTGTTGATCAGTCTGCCAGAAAGAAGCCTTATTTTGATCACGACTTGAGAGCAGAAGATCCGAGACGATTACACAACCTCACAGTGCTGGAAGATGTATTTATCTCAATCAAGACAACTGGTGATTACCACGAAGCGCGCGTCACACTCTTGATTGACACATGGTTTCAGAATGCTAAAAAACAGGTTCATTTTTTTACTGATCGTGAGGACAATGAATTAAATGAACGTCTGGGAGGTCACCTTATCAAGACTGCTTGTGAAACAGGGCACCAAAGGACGAAACTTTGTTGCAAGATGCAAGCTGAGCTTGATTTCTTTGTAAAAAACTTCAACACAAAGTGGTTCTGCCATTTTGATGACGATAACTACGTCAATGTTCATACACTGGTGAAAACACTAAAAAAATTCAACCCGCTCGAGAATGTGTACCTGGGAAGACCAAGTCTGACGAAAGCGATGGAGAGAAAGAAATTTTGGTTCGCAACTGGTGGGGCAGGGTTTTGTTTGAGTCATGCCCTGGTGGCAAGAATGAGCCCTCACATCAGTGATGGCAAGTTTGCAGACAGCTGTGAGCGGGTTAAAGTTCCAGATGACTGCACCATTGGATTTATTAGTGGCGGCAGAATTGAATTATATCTTCGTGGCAAGTATGGTGTATTACAAAGCAACACGCTCTTCAAGGGGGATCCAGAGATTAGTTTTAGTCATGGTTATTTCGGCGGTAGATACAATCGAATCAACATAGCTGGACCGTTTGACACGGAACAGGATCCTACGCGGTTTAAATCCATCCATTGCCTTCTTTATCCGGAGACAGGCTGGTGTCCGAAGTCAGAGGACGTTAATGAACAGAAGAATCATGAAGTAGTCCCAGAACCTTCTGAGAAACACGATTGTGTCCCAAGTGACAAAGTATTGTTATTTCCAACGCGTCCAAGCAAGCCACCAGATTTCACAGAGAGAAAACGGTTTTATAACAAAGCAGGTATCGAGGAAGCTGAAGGTGGTTATCAGATCACAGTGGACAACAAAAAGGTGAAAACACCAGCTGGAAATCTTCTTGTTGTTCTCAGTAAACCTTTGGCCATGGCAGTATCTGTAGAGTGGAATTCACAGGTTGACACCATCAAACCAGCAAATATGCATCTGACTTCTCTCAGTAACACTGTGATTGACAATCCACGGACAAGAAATCATGATCAGCAAATTTCACACATTTTAGAATTTTTGAGCTCGGACAGTATTTGCTTTTTTGCGGATGAACCTGAAGAGTTAGTGGATCTACAAAGAAAGGAATGGATACCTATCATGGAATGGTTTAACAACAAGTATTCAGTACCTGTTGAACCAAGTCATGGTCTGCTTGCGGCGACCATACCAGACGATGCCGAGGAACGACTAAAGGCTCATCTGACACCACTTGACAGCTGGTCCCTAACCGGCCTCGAATTTGCTGTGGAAACATTGAAGTCGTTTATTCTTACAATGGCACTCATCGAAAATCACCTCACAGTGGAAAAAGCTGTTCATTTGTCCAGACTAGAGCTAGAATTTCAGATAAGCCGGTGGGGTAGTGTGGAATGGGCGCACGATCTGGAGTTGATGGAGACCAGGAGTAGGGTGGCTGCCGCTGTTTTGTTTTACAGTCTAAATAACAGACGTAGAACTTTACCATCAAGTTCATAA

Transcript

rna-pdam_00018495

TGAAGAAAGAATATTCGTGACAGATTGAAGGGAGAATTATGCCACCTGTTATTTCTTGGTGGACcacaatatttcattgaaaagaaagcgcggtaaaatttcaaaaccgTTATGACCTCTGTGGACAATGATTTGCactgaaagagagaaatttgcaTCGCTAAGACGGTTTTTTGTTGAACGATACGTCTGTGCGTGAGTCGAGTTTCGAATTTCCTGTCACTATAGAATTTCCAATGGGTGGAAAGAATTCAAACATCTGCCATGGATTTATGTGATATAAGGTGAAGAATAAGACGCTAAAGATCAAATATCTGTCTATCAGGTTTTAATTAACGAGCTGAAAGACATTTTGCGTCGCTGGTAGGAAAGTCGGATCTGTGTTGATTTTCGTGTGTTACGCGTTGAAATTATCAACCTCGCCATCTGgtgttttttcttgatctttgACTTCGGAAAAGTTTTGACGATATTAATTGACTTGTTTTAACAAGAATTAGTGATAACAGCATTGCAATGTGCTCTGTAATGGATTTGGCGGGCCTCAATTCATTTCTTAGAAATTCAGCCTAATGCAAGCCAGCAATTGCGATGGATATTCCAAGCTcaagtttaaagtttaattgaaagaaaatgttcccTCCACGAAGAAGATGCAGAAAACTGCTGGTCTGGATTGCTCTCGCTGTTGTTGCACAAATAATGTTTACCTTATTCCTGCACGGAGAGTTTAATTTCGCGCCAATCGAGCGCACGAGGACgacaaagagaattacaaGGAGACAGTCACGTCTACGACTTCAGAGTCAAGGTGGCGATCGTTTGGAAGAAGATCATAAGTTTATCGCTCGTTCAAAGCTAGAACATGCTCGTGGTAAGGACGAGGGTACAGAATATGTCGAAAGTTTGGTagttaatgaaattaaatcaacAGATTTTCCGCGAATGTCTGGAAGGAATCTAAAGAACCCTTTGCGTGTCAACAGACGAAATCAATCCATTAACCTCTCAACAGCGATAAGCGGCCTTCAAGTAgtcaaagaaagagaaatatttgttgatcAGTCTGCCAGAAAGAAGCCTTATTTTGATCACGACTTGAGAGCAGAAGATCCGAGACGATTACACAACCTCACAGTGCTGGAAGATGTATTTATCTCAATCAAGACAACTGGTGATTACCACGAAGCGCGCGTCACACTCTTGATTGACACATGGTTTCAGAATGCTAAAAAACAGgttcatttttttactgatcGTGAGGACAATGAATTAAATGAACGTCTGGGAGGTCACCTTATCAAGACTGCTTGTGAAACAGGGCACCAAAGGACGAAACTTTGTTGCAAGATGCAAGCTGAGcttgatttctttgtaaaaaacTTCAACACAAAGTGGTTCTGCCATTTTGATGACGATAACTACGTCAATGTTCATACACTGGtgaaaacactaaaaaaattcaacccGCTCGAGAATGTGTACCTGGGAAGACCAAGTCTGACGAAAGCGATGGAGagaaagaaattttggttCGCAACTGGTGGGGCAGGGTTTTGTTTGAGTCATGCCCTGGTGGCAAGAATGAGCCCTCACATCAGTGATGGCAAGTTTGCAGACAGCTGTGAGCGGGTTAAAGTTCCAGATGACTGCACCATTGGATTTATTAGTGGCGGCAGAATTGAATTATATCTTCGTGGCAAGTATGGTGTATTACAAAGCAACACGCTCTTCAAGGGGGATCCAGAGattaGTTTTAGTCATGGTTATTTCGGCGGTAGATACAATCGAATCAACATAGCTGGACCGTTTGACACGGAACAGGATCCTACGCGGTTTAAATCCATCCATTGCCTTCTTTATCCGGAGACAGGCTGGTGTCCGAAGTCAGAGGACGTTAATGAACAGAAGAATCATGAAGTAGTCCCAGAACCTTCTGAGAAACACGATTGTGTCCCAAGTGACAAAGTATTGTTATTTCCAACGCGTCCAAGCAAGCCACCAGATTTCACAGAGAGAAAACGGTTTTATAACAAAGCAGGTATCGAGGAAGCTGAAGGTGGTTATCAGATCACAGTGGACAacaaaaaggtgaaaacaCCAGCTGGAAATCTTCTTGTTGTTCTCAGTAAACCTTTGGCCATGGCAGTATCTGTAGAGTGGAATTCACAGGTTGACACCATCAAACCAGCAAATATGCATCTGACTTCTCTCAGTAACACTGTGATTGACAATCCACGGACAAGAAATCATGATCAGCAAATTTCACacattttagaatttttgaGCTCGGACAGTATTTGCTTTTTTGCGGATGAACCTGAAGAGTTAGTGGATCTACAAAGAAAGGAATGGATACCTATCATGGAATGGTTTAAcaacaaGTATTCAGTACCTGTTGAACCAAGTCATGGTCTGCTTGCGGCGACCATACCAGACGATGCCGAGGAACGACTAAAGGCTCATCTGACACCACTTGACAGCTGGTCCCTAACCGGCCTCGAATTTGCTGTGGAAACATTGAAGTCGTTTATTCTTACAATGGCACTCATCGAAAATCACCTCACAGTGGAAAAAGCTGTTCATTTGTCCAGACTAGAGCTAGAATTTCAGATAAGCCGGTGGGGTAGTGTGGAATGGGCGCACGATCTGGAGTTGATGGAGACCAGGAGTAGGGTGGCTGccgctgttttgttttacagtcTAAATAACAGACGTAGAACTTTACCATCAAGTTCATAATCATCTCTCTTTCTAGAGCATCAACATATTTTGCTCCTCTTGATGTGTGTCGACAGTGCTTAAGACTCCTTTGTAGGATCCGGACCGCGTCAGGATAACTTTCTAACCgaaaaaaatggtatttttACGGCCGGAAAATGTACTAGAAATTGAAAGAGCTTGTTAGTTTTGTTACTTGTTAGTTAGAGTATCCATGGTTAATGTAATCCATATTTAATAGTTTGAAACCTTACtgttgagtttttttctttgaaattcctTTTGAGCCTTACAGCTAActgatttctatttttttccttaaaattttcagatcgACCTTTTACATTTACgagcaagcaaaaaaaaatcatacaaaatatttaatcgCACATAGTATGTCTAACTGACTCATTAAAATCCCATCTAACAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O12972	Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Gallus gallus OX=9031 GN=RFNG PE=2 SV=2
Q8N5M1	ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens OX=9606 GN=ATPAF2 PE=1 SV=1
Q8JHF2	Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Danio rerio OX=7955 GN=lfng PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07542 all species →	ATP12	ATP12 chaperone protein	Family	Interproscan
PF02434 all species →	Fringe	Fringe-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042272 all species →	Homologous_superfamily	ATP12, ATP synthase F1-assembly protein, N-terminal	Interproscan
IPR011419 all species →	Family	ATP12, ATP synthase F1-assembly protein	Interproscan
IPR003378 all species →	Domain	Fringe-like, glycosyltransferase domain	Interproscan
IPR023335 all species →	Homologous_superfamily	ATP12 orthogonal Bundle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21013 all species →	ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043461 all species →	Biological Process	proton-transporting ATP synthase complex assembly	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0033615 all species →	Biological Process	mitochondrial proton-transporting ATP synthase complex assembly	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX39892.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.