Gene detail

Detailed information of RMX40101.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3701:382686...387918
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002257

TACGTCCTCCATCTTTGGCCTGGATACCAAGCTTGTCATCCGGGAGTTCGTGTGTAACGTAAAGGCCTTTGGGATAGTATGCTTCACCTGCCTCACACTCGCTTAGTTTGAACGGAAGGTTTTGTTTGGATTACTTTTGGAGTACTTGCATTTCGCTTCCAAATGGCTCGAGTTTACGTCGGAAATCTGGGAAATAAGGGTTCCAGGCGAGAACTCGAACGTGAGTTTGAGAGATACGGGCCTCTTCGCGACGTATGGGTCGCTCGAAATCCTCCAGGCTTTGCTTTCATTCTGTATGAAGACTCACGGGATGCTGACGACGCGATCCGTGAAATGGATGGAAAGTTAGTATGTGGAGAACGGATTCGTGTAGAACTTGCTCGAGGTCCTAGTCGTGGCGGAAGAGCTGCTCGGCTTGGACTGACGGAGAAATGCTTTGATTGTGGAAGGGTTGGACATTACGCTCGGGTTTGTACACGTCGACCGCCCGGCGGAAGTCGAGACCGCGATCGAGAGCGGCGGCGCTCCAGATCACGCAGTCCACGATCCCGTTCCCGTTCTCGTTCACCCAAACGAAGACGCAGTCACAGTCGATCTCAGTCTCCAAGGAGGAGACGCTCTGCATCAAATGAAGACAGGAAATCGAAATCTCCCTCAAAATCTCGCAGTAAGAGCCGTTCACGCAGCCGAAGTGAAGAGAAAATCACCAGAGAAAGaagTGCAAGTCCTGGTCCTGACAGAAAGCAAGAGCAAGAGAAAGAAGACTATAAAAGAAGGGAAGAAACAGGGAGAGAAGCTGAAGAAGACAGGCCAAGggtggaggaggaggagaGGGAGCAAAAGTCTCGCAGTGCCTCACCTAGGCCAAATGACACTGACAGCCACTTTAATGATGACAATGTGGAATAACAGTGTGGCTTCTCTCACTTACAGTGTTGTCCAGTTATTTCAGTATTTGTAGATATTCTTCTAAAGTCTGTAGcttttaatcaagaaattgCTTGAAGATTCAGCTGTAGCTATGGTTTTCCTTGTCTAGATTAGCCAGTTGGTGAATATTGAAGGAATTCTGGGTCAAAATGTAGCTGTTGGATTGGGTGGGGTGCAAGTGGGTCCATGTTGTGGTAACAGGTCTGGCTGTTTGGTGTGAGGCAGGCCCTTTTGTCACCTTAGATTCTTTGATAACCTAAGGCTGGTATGGTGGTGTTACAGGAACCCACCCACTTGATACTCAGGATTCACGAAACAAATATAGttaattatctccaaattttttttatcattagaAGTAGTAATGGTATCACTCTCATTGTTCTTTATTACATACTTTTTCTGTTACCTGTCTACAGTGTTTATTATGGTTGGTTTATTATGTGAGTTTGTAGGGGAAAAGTTAAGACCCATTTGAAATCTATGCAAATCAAGTCAAACCACCAAATTCAATTGTTAATGTCATTGGAAATTTAGTACTGTTATAAAATACCTGAGTTTTACTTCTATTGCTTGCGTGTGCCTTTGTAGCAGTTCATTCTCTCATAACTTATTACTTGTTTAGTGAAATGGGGTTCCTTTGGTTTCCATTGCAAGTTGCCAGCTGCTCAGGCACTTACAATTTTGAAGGGATACATTGTTTTCCAggggtttcaaaatgtttgtaagTAGGTGTCCATGAAAAGTCCATTgaaaggtaattattttgaccAGAGTAACCAGCGACATGTTGGTGAGTAGCCAGCAGAATTCTGGTGGTCACTGGCTTGTTTTGGAACCCCTGGTTTTTTCCTCATTACCTGTACAGTATTTATAATCTTTTCACAGCATTTTTGAGGGATCAAAAATTGCTTCCAGTAAAGTATTTTGATTTCACTGAGATGGttctttttccactttcttATTGTTTTACACTTGCTTATTAGCTTAGGAATATCTTTGCAATGAAGTCAGTTGTTGCACTCCATATTTTGGGGCAGCATCAGTATCTGtcttctccatac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T106	Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 GN=SRSF7 PE=2 SV=1
Q16629	Serine/arginine-rich splicing factor 7 OS=Homo sapiens OX=9606 GN=SRSF7 PE=1 SV=1
Q8BL97	Serine/arginine-rich splicing factor 7 OS=Mus musculus OX=10090 GN=Srsf7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48038 all species →	RIBONUCLEOPROTEIN RB97D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12896	SRSF7, SFRS7; serine/arginine-rich splicing factor 7	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.