Gene detail

Detailed information of RMX40146.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3701:427623...433437
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002264

ttttaatcctGTAATCCAAACATAATCTTTTAGCGTTACTTCGTTATTAGCAGCATTTTTGAACTGCAATCTTCTGGTTGTTAGTCGTCGTTATGGATCAGTTTTACGAAATCTTCGACTCATATGCTGAGCAGCTGGCTAAGCTTCCAATGTTGCCAGTTTTACAGTGTGTCCACTACATTATTATGAACTTGAAATTACGCATGGGAGAAGGTCTTTATGCTGAAGCCATTGTGGAGGCCCACAGAGCAAAGAACATTCTCAAGGGAGTAGAGATATCATCAACACTTTACCATGATGCTTGGCTGGTCATGATAGCAGTAGGAACTGCAAAAGGAGCTGGCAGTAGACTTTTAAGACCTGTGGTTATGTTTGCTCAAGGAAAAGTGGATGCTGTTAACGAAGCGCTGTACCCATCATTtgTCACCAAACTATCAATTGTTGGAAGTATTCTCTTTATTGTGGTACAGAAGCGCATAGTGGCCTTCACAACAGCTGAAGTTCTTCTGGGCATAACTTGTGTGGGAGCATTTCTTCAGGTCCTCATGTATCTCAGTAACACAAGTGACCCTTTTACCTATTTAGAGAAAGCTGTGGCTGCTGTTCTTTTTAAAGAACCAGCTGAAAAGGCAGATACTTCAGATgctaagaagaaaaaggaataacCACTCttaatttaaatgaagaaagaggATACACCTTACTTTTGATAATTGTGTCCTTGCCTAGTGTGCAACAGGTTGGAATATGGCAATCTGTCATGGAATGTCAGTCACAAAGACTTGCTGATTGctattaaccaatcagaagattGTGTTATTTGTCACAAATATGTGGTGAGGTTTTGTGTAAGCTTATCCGAAAAATTCCTCTCCttcctttgaaaaaggaaCAGAGAAACCTTGGAATGAGGTTGAGGTGTGTTGTCTTTGAGTGGTTTGGTGaatgttgaaataaatccTGAAATGGCTTCGTGTTACTTTGATgtgctctctgattggtcaccAGTCCAGCAAACAAGATGTACATATGCAAAACAATTCCTGAAAcgtctttttaatttcatcagcGACGAGATCATAATTTATTAGtagtaaagtttttttctgaacattTACACATGAACCCTAACGTTATTGAAGAACACTAAATATAGTCTTATTTTTGAGACCCTCAAGACAATGTATTTACTTAAATGTACTGATGTCTTACTAATGAACAGCTGTTTCGAGAAAggttgaaggaaaaaagcgaaaaagtgCACGAAATATACCCGAAGGGTATTGATGGTAGTTCCTTCACCTCAggtttacttATTAAAATTCGTCGATTACCGGATAGCCATATTTCTATTCGAGATTATCGCGTGCACTTCTGTCCATTTTGCCGAAAACCTTCCTCGAAACAGCTCAAAATATACTTATTTTTGATAgccattttttcacttttttactACAAGTGTGTGTATATTTGTGTAATCGTCTCAATACTCCTAGCTAgtcgttttgaaaattaaagtttagtTACTTCATACCCTACTAGTCTGCTGTTTTGAGAGCGCTTTCCTTCACGTGAAGAATCCCAACAGATTTAAACAGTTCTTCCTTTCACAAATatttagcttttaaaaaaatgcataaaaaaatgagagaaaaacaaaatagcaaCTGAAATTGGGTGATAAAATTTAGGTAATTTAGTCTTTTATTCCAGTGCGATCACCTTCTGTACTTTGGTTCTTTGtctcttcttttccttgtgTGAATGTGTGAGTTTGCCTGGTTTTACCAAAAAGCCATTTCTCTAATTTCATTGATCAGTTGGTGTAGTTGTTGATAGATATAGAATATGCAGACATGGAATAAACCAATATGCAATCAAGTTAATAACAATTGCAACCAGTTCAAATgtaatcgaaaaaaaaaaaggagcgAAAAGAACTACCCCTATGCAGAGTACACTCAAACCACCCGTACCATTAATTGCGATAAactatgaaagaaaacaacactaGCCATAAGTCTACTAAAGCTCTGTAGCAGTAAAGCGTCCTAAGAACCAAGCCGAAGATGGTAGGATTGACTCCGAAGAAGCAAAacgctttctttttctgcttctTAAAGTTCCATATGAACGCGCGTCAtctaagaaacaaaagtacaTTGCAACCTTACGCagtcagttaaaaaaaaataaacaaaaaacaaagtcaCTTCCCTTATTGATAGTACAGTTCAGTCTAAAGGTATAGCATCCACAGCCTGGGTCGTCTGCACTTGTGCTGGTTGAGGTGTCCTGTGGTCAAGACCATTGATGAACATGCGCAGGTACTGTCCAAGGCCACCAGCTGGAACTATGTTGCTTAAGTCAAAACGATCCTCATTGGATGGATCCAGCATTCGGTTGGCTATGGCTTCTTCGTTCCCTGACGCTAAGTCTTCCTGCCTCAAACAGTACTTCCACGTTTCGACATCACCGCGGATTGCATCAAGCATTCGGCGCCTCATTTCCAGCTCGGTACTGAGGCAGATCCTGAAATAAGCATTGGACCAGCCGCTTCTCAACATTTGAAGGAAATGCTCAGTCTGGAGATTATGGCTTTGtatcatttctttgaaatcttttacCAGGGATCTTTCAAGAGGATCATGAATTTCATCTCCGTTTACAGCTTTTTCCACCAACTCTTTGCCGACTTGGAGGTACATATCTTGCATGTCATGGTATCTATAATTTGGAAGTAGGTTGCCACATTGCTGAGGGCTGCGCAACACAGTATCTGTcgtaatttctttgtttccttggtTGTTATCGACGCTTCCTGGTTCAACTGCTCTTCCAGGTACCGCTCGCTCGCTTTCTTGTTGTGGttcattctttttaagttGCTTCGTATCATCTTCATTTTGATGGATCAGTGCTTTGCAAAACTCAACCGGACTTTCCATGATATTCTTCACCACCTCGGCCAGAGATGCCAGATTTTCGGGATTCTCAAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GN30	Trimeric intracellular cation channel type B-B OS=Xenopus laevis OX=8355 GN=tmem38b-b PE=1 SV=1
Q9NA75	Trimeric intracellular cation channel type 1B.1 OS=Caenorhabditis elegans OX=6239 GN=tric-1B.1 PE=1 SV=2
Q0VC58	Trimeric intracellular cation channel type B OS=Bos taurus OX=9913 GN=TMEM38B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007190 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05197 all species →	TRIC	TRIC channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007866 all species →	Family	TRIC channel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12454 all species →	TRIMERIC INTRACELLULAR CATION CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24013	TMEM38, TRIC; trimeric intracellular cation channel	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.