Gene detail

Detailed information of RMX40233.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3686:2788...9566
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00014337

ATGGATATATCGAAGAAAACAACGGGATTTGAGGGGTTCGAGGCACCCGTTGAAGACGATGCTGCCGCCATTGTTGAAATGAACTACGAGGAATGGGGAAGAATTACCGCTTCCCTAGACTCCAGTCCTTTGCAAGGAGATATTTCTGACCAGGGAGGGaaacagaaaatgaatagAATACAGAATGGCTGGTTTTCCGAAATAAATGACCAGTGGCCCGGCCAAGCACTTTCTCTTGAAGTAGAGGAGATTTTGTTTGagggaaaatcaaaatatcagGATATTCTTGTCTTTAAAAGCAAGCATCATGGCAAGGTCCTTGTGTTGGATGGAGTTATACAATGCACTGATAGAGATGAGTTTTCTTATCAAGAGATGATTACTTTTCTTCCACTCAACTCGCATCCTTGTCCTCGAAAGGTTCTTGTTGTTGGCGGAGGCGATGGAGGAGTTATCAGAGAAGTTTCTAAACATCCAGCTGTGGAGTCCATTGTTCAATGTGAAATAGATGAGGAAGTAATTGAAGTGTGTAAAAAGCATTTACCAAATATGGCTGAGGGTTTTAGCTCACCTAAATTAACTCAGTATGTAGGAGATGGATTTGATTACATGAAGAagcatgaaaatgaatttgatgttaTTATTACAGACTCTTCAGATCCTGTAGGTCCTGCAGAATCTCTGTTTCAAGAATCATACTATGAACTCATGAAAAAAGCACTTAAGCCAGATGGATTATTATGCTGCCAAGGTGAATGTCTTTGGCTTCATATCCCTTTAATCAAGTCAGTCTTGGATTTCTGTAGAAGATTATTTCCTTCAGTCAGTTATGGTTACACGACAATACCAACATATCCCAGTGGACAGATAGGATTCATACTGTGTAGCAAAAATAAGGAAACTAAGTTTGATAATCCAGTTACTGAGTTTACTGAGGACCAACTTGAGAAGTTCCAGCTGAGGTACTACAATGCTGACGTTCACAGAACCGCTTTTGTTTTACCACAGTTTGCAAAAAAGGTTTGCGCTTTTGATATGACACCCACACGACGATAATGGTATTGTTGTTCCATCACGTCTCTCTCTGCGGGATACACTAGCGACAGATAACAGTGACCAAGATACTTATATAACCcggtcaaaaagaaaaaatacagtgCAGCTTAAATATAACGAGACCAAGTGATAAGGAGACAACAAGTCACTCATAAGTTCTACTTCCCCAGTCGAGGAAGGGTGGAGACCAGGAGCCCATACTAACATATTTTGCTTGTCACTTTTTTCTCCTTGGTTGCTCTttccttaaaggaaaaataaagtttattattGTAGTATTTATATAATTTAGTTGCCTTACCTataataaacatgaaattaattaaattggTAAGTGCTCTTAGCTTCAATTCATCAGTGTCGTCATACTTACGAACTATTTGCAATTGAGTTAAAGTgaattttaagatatttaaatCTATCGTATCTAGTTGGTAATTGAGGGTATTATTAGCAAACTCCTGCGCGTCCCTCGTGAAGtcaaaagaaacttactgaaaatctttttcatcatcaCTTTAAGTGCGATTCGCAGTAGGCATTTGTTTCTCCCCGTAAGtttcaaaagtatttgaaggatattaaagaaaataggcTCCATTTAGCGAAACATGCTTTTGTTCACTAGTATACTCGTGTTTGCGGGAAACCTTTGGAAACACACTCGCTACAATTATTCATACAAATTACCACTTGAACCCTGATAGATTAATCGTCTGCTTGGCGTGTTTTACGGTCTTGAACGTAAAATTACTCTTTGATTTGATATTTCAGTTTCGCTGCATGCAGCCACTGGATTGAAAAGTGAGGCAAGCCCCTTTGTCTGATCGAAAGTTGTCCTTGGCAATTcgaaattaaaagtaaaattaaccttttttattatttatttttaattttttttcctaataaaTACTCAGCTGTGGGTTCGTTTTTTGCCAGGAATTGAGCAGTGATTTGAACGGGGAAAAACTCGAGCACTTAACGGCtaacttctttaaaacttccaatttattaattttaaataaaaaattcaaatagttCTTCATTAATGAGTCGCGTCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64674	Spermidine synthase OS=Mus musculus OX=10090 GN=Srm PE=1 SV=1
P19623	Spermidine synthase OS=Homo sapiens OX=9606 GN=SRM PE=1 SV=1
Q9XY92	Spermidine synthase OS=Dictyostelium discoideum OX=44689 GN=spsA PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01564 all species →	Spermine_synth	Spermine/spermidine synthase domain	Domain	Interproscan
PF17284 all species →	Spermine_synt_N	Spermidine synthase tetramerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001045 all species →	Family	Spermidine/spermine synthases	Interproscan
IPR035246 all species →	Domain	Spermidine synthase, tetramerisation domain	Interproscan
IPR037163 all species →	Homologous_superfamily	Spermidine synthase, tetramerisation domain superfamily	Interproscan
IPR030668 all species →	Family	Spermidine/spermine synthase, eukaryotes	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR030373 all species →	Conserved_site	Polyamine biosynthesis domain, conserved site	Interproscan
IPR030374 all species →	Domain	Polyamine biosynthesis domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11558 all species →	SPERMIDINE/SPERMINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006595 all species →	Biological Process	polyamine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00797	speE, SRM, SPE3; spermidine synthase	EC:2.5.1.16	Glutathione metabolism	ko00480	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.