Gene detail

Detailed information of RMX40256.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3686:182213...195699
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00014358

CTTTTTCTGTGTGTGTATTGAGCGTAGGATGTAGAAAATCTGCAAGTACCCCACGAAAAAGCGCACCCTAGGGTTCAATGCTGGCATATGGCAATAATGGTTTTCGGTCTGCTTTTGGTAATCATCTTGgagaagacattttttttggttatttctcTATCAATCAGAGACTCCAATGGAACTGATTAGGCTACGCCAAGGTTGTTTGTGACAATTCCTTTCACTATGGTAGTCACGTGACGATTATGAACATTCAGGCGATAAGTCACGCGATAACTCCGACGATTTCTTTGTGTTCGCATTCATTTAGTATCTAgatcaatattttgttgagtgGGGGAAGATGGCGGGCCTTACACGTACTCAGCTTTTGTTGACTGTTGGAATGCTGATCGCAGGTTCACTTAACACTGTCACTCTTAAAGCACAAAACAACTGTTCAGCTAGGGGACTGAAAGATATGAATGGTAAGGAAAAACACCAATTTGAACATCCATGGATTCAAACTGCTCTAATGTTTCTTGGGGAGATGATTTGTTTAATTGGTTTGTTTATTCATCGGAGGAAGGAAAGACTAAAATACAAACAGAGATTGTTACATGACGGAATAGATAGAAGATCTTACAAAGAAGCAACACAAACCAGAAAAAGTCTTCAAAGGAGGGTGTTTCAGTGGATCTTTGCCTTTCCTGCTTTATGTGACCTGTGTGGAACCACTTTAGCAACAATTGGTCTGCTTTATGTTAAAGCATCAGTATGGCAAATGCTGAGAGGTTCAATTATAATATTTACTGGTTTGCTTTCTaaaatctttttgaaGAGAAAGTTGTGGCCAATTCACTGGATAGGAATGATTGTAACTGTGGTTGGCTTAGTTCTTGTTGGACTGTCAAGTGTTCTCAGAGATAAAGAGGCATCCCATCCTAAAGCTGGTTTAGGTATTGCTTTTATTCTTATGGGTCAGTGCGTCAGTGCCACACAGTATATTGTAGAAGAACGGTTCCTCAAGGAGAAGAACTTTCACCCTCTACAGGTTGTTGGAATGGAAGGCTTTTTTGGATTCACAGTCATGGCTGCTGTGGTCCTTCCTGTGCTGTACTTTATTCCAGGAAGCCAACCTCACCACAGCTACGAAAACAGCCTTGATGCTCTgctgatgataaaaaatgatacGACTCTTGCGACACTTATAGTGTTTTATACTCTTTCTATcgcattttacaatttctttggATTGACCCTTACGAAGTCTCTAACAGcGGTCCACAGAACATTGATAGACGCCTGCAGAACAATTGTGGTGTGGGCTGTAGAACTGTTCATACACTATGCCCTTCATGAGGTATTGCTTCATCCTCGCTCTGTATATTATCTTGGTGTCTTCATCGTTCTTTGTGGTGGTGCGgtggcctcatgGATTTTGGTGAAACGTGGGATAGAAAGTACAGCATATTTCAAGGATCAAGCTTCAAATGAGATAGAAAATGGCGATGTAGACTTACCGGAGAATGAGCCATTTCTGAGAGGAATTGACAAAGCAGGACCTTACACTGGTGTTATGTGAACTGAGACCGATTCTATCCACATAATTACCCTTTGTTTCATAAACACGTGGTTCCAATtggaatgttttgtttccctCATTCAGAAATACGAATTTTGTGCAAGCCTGGCATTGTTAGTTGAAAAGAGTATTGCCTTGAATTATCTACAACAAAGTCTCATGCATGCTGGGGCCGAAGATGCACCTGCCCTTAATGAAGATTCAACGTACGCGCTATTTTGCAAGGCTATTTTGTTCACGTCTCTACCAGAGCCGAGCATAGCATTTCATTGTGGATGAAAACTAAGGTTAATCGCTCATCTTATCTTTTATAATAGAATTGTTAGATGTCCGGCGTGTCTTTTAGAATGCCAGTCAACTTGATCGTAATCAGcagtaaattataaaataaaAAGTGTTGTATATGATGTTGCCTTGAgtttaaatgaaaagctattttttaaactgtcGCAGattatgtttttaataaaagatttatttttcgacAAGTAAATTATGTAGTGTATGTACAGATCGCAACTCTCATATGTTCTCTCAGTTCAACGTAAACACGCTTCCAACAATAAGTCTTCATATCAGTTTGACTGTCCATTGAAAGGGACAGTTAGTCCAAAGGACAGTTAACAAAATCATCTCACCATCTACAACAAGATGATAAAAGTTATGATAAAAGTAATGACTTTGTATCATTTACTACAACGCCAAAAGGCTCATGCGGAATGAAGTTTAAGATAACTATATGTACAAAATACTTGTTGATATATCACAGCTGTGCATTTACCAGGGTGAAATGtctaaagaaattttgccGTATAAAAGAAAGCGCTGCATTTTATGTTTACCTTTATGATCGAATTGATTATCTGTGGAAGTTCGGATGGGTATCAGTTCATATTTCAGTGGATATGATTTGATATTTGCGTCGGTTTTTCTTGATAAGTCATCATgaggtaaaatgaaatttttttctgtacaaGTGCTTGCATTAAGAAGACTTTGTGActtgtttttctgtctcttGGAATTCAAACTCAACGTTGGCAGCTAGGATATTTCTCTTTCGAGCACCGCTTTGCGGAGCTTTCAATTCATCGATCTTTGacatttgctttgttttgggGGCATCGTAAGATACTGTATCTCCAACAGAGTTAAAATTCATTGCTGGAGTCAGAGATGGAAAAACCTTGCGGGACAAACGATGGAGTCTACGCCTTACTTCCCGCTTAAAATGCGCATGTCGAAATGCGTAGAGAAATGGATCTAACAGGGAATTAATGTTTAGACAAGTAACTGGAAGCCATTGAccgatggaaattttaaaaatggtgCTTTTAAAAGAGTCGCCATTGAATTCAAAAGGGTTGCTCTCCAGCTTGGCAAAGATTGAGAACACAAGGATGAGAATAATAGGGATAGCAAAGAATATAAAGTTTGTGAAAACCAACAAAGCGATTTTTCTTGCAAGAGATATCTCTCGCTTCACCCCAACCTGATTGCTACTCCTTTTCACAAACCTGAAAACCTTGAAATATAAGGGAAGGTTCGccaagtaaagcaaaacaatgcATGCtagagaagaaagaagaatcAGTGATGATCCTGACTGGAATTGTTTATCATAACTCAAAGGAGTGCAGGCTCGCTTTATGTTGTAATGAAGACCCCCAACACCAAATATGGGCAAGACAGCGAAAGTGATGGCAGTAACCCAAGCAAATAGCAATGAGATGTGCGCACCTTTCGCTGTCATGCGCTTGGAAGGGTTGACACAGTACACGACAGCAAGATACCTCTCGAGTGTGAGAAGCAGTGAGATGGACACAGAAATCAGCTGTCCCGAGATAAAGATGGGACCAGTGGAGGGCTGCAGCTCTTTTCCTGCCCACATAACCTCTTCTAGAATACTGTCGATGTTCGAGATGTTTACATGGGCCACCCATATTGCGTATATCCCAATAAGCAGGTCGATAATTCCTGTATGgcttatgagaataaaggacgCTGTCTTTCGTAAGTTGCGGGACGAGAGAATAACAAAGATGACAACACAATTGAAAAGGATTGTAAAGGGGCTAAAAATGTACTCCAAATAAAACAAGTGCTGAGGAAGGGATGTCCGTTTTTTCAAGTATGGCATAACAACGTGACGGAATTCGCATTCCGACTGCTTCACGCACATGCACTCGGGCGAAAATCGGTGTCTTACAAATCTCGTAGGATCCTTCTTCCCAAATTCAAGAAACTCCATTTCATCAAACTCTCGAAGGCATTCCTCAGCCTTCTGCTTTCGTTGCGCCTCGTTGACGAGATTTCTTGGGTTAACGACAGTGCAGTTTGGGCAGAATTTACACCAAGTTACCCCCCTGAGTTCTTTGAGTTTAGGAAGAGCCAGAATATTTTCATCTGGGACCCAGTCGATTGTTCCAGTGATATCCAGGTATTCAAGATCGCGGGTACTATTTGACTGGTTACCAGACCAACTCCTTATATTATTCAGACTGAGATTTaaatatttcaggCGGTTGAGGCCGGCAAAGAATTTGCTGTCAACCTCCCCAATGAAGTTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RKH7	Solute carrier family 35 member F6 OS=Rattus norvegicus OX=10116 GN=Slc35f6 PE=2 SV=1
Q8VE96	Solute carrier family 35 member F6 OS=Mus musculus OX=10090 GN=Slc35f6 PE=1 SV=1
Q8N357	Solute carrier family 35 member F6 OS=Homo sapiens OX=9606 GN=SLC35F6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08627 all species →	CRT-like	CRT-like, chloroquine-resistance transporter-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013936 all species →	Family	Chloroquine-resistance transporter-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13146 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX40256.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.