Gene detail

Detailed information of RMX40341.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3680:64748...73559
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00019664

ATGCTTGGTTCAGGGTTTAGCAAGCAGAAACTTAAGGTGAATTTAAAGCTGGCCATTAACCGACTCAAActtctggaaaagaaaaagaCGGAATTGGCACTGAAAGCAAGGAAAGAAATCGCTGATTATATAAACAatggaaaagaggaaagagcGAGAATTAGAGTGGAGCATATTATCCGAGAAGACTATTTAGTTGAAGCAATGGAGATGTTAGAATTGTTCTGTGATCTTCTGTTGGCCAGATTTGGTTTAATTGAGACCCAACAATTCTGTGATGAAGGAATGATCGAGGCAGTCACAACCTTAATCTGGGCAGCACCACGGCTTCAGTCAGATGTTCAGGAGTTACGAGTGATCTCTGACCAGCTAGGACTGAAATATGGCAAAAAGTTTGGACATGAAGCTGCGATCAATGCCAATAGTACAGTGAATCAAAGACTCATCTTGAAACTTGATCCTAGACCACCACCAAAGACACTagtggaaaattatttgatagaGATTGCTCGCAGTCATGGTGTACAGTTTGAACCTGATCCATCAGTGCTAGGAGAAGCTCAGATACCTCCTGATGACGACATCAAGCCAAGGCCACCTAGTGGAGGAGGTTCTAGCGGTGGAGGAGGTCACATTGGATTTGAGGGCTATGGAGCAGGCTTTAATGGGCCTAGTATTCCACCCATGACAGGAGGTAACATGGGATATGCAGCATACCCTCCACCAACACATGGAAATGTCCCACCCTACCCCTCTGGTCCACCAGATGTACCACCCAGTTATCCCTCAGAAAAAAAGCTACCTCCCTACCCTGGGGGCCCTTTTAACAACCACAATGCTGCCCCCTCTCCACCAGCTCCTCATCAGCCTCCTGCTCCCAGTGCACCACGCCCTTCATCAGGCCCCAGTTTCCCAGACCTTCCTGCAGTACCTACAGATTTACCAAACTTGCCTGACAGTATTCCAGGGGGGAACAGTGCTGGCGGTGAAGATGTAGACTTTGATGATCTTACTAGGAGATTCGAAGATCTTAAGAAGAAGAAGTAgactttgcaaaaatttttgttcatgaaTGTTGTGAAATGTAATCAAGCTCATGCTGtctttaaatacaattttgtaGTCACTGGTAAATCTGCCGTTTGTATCAGTAATTTTATGCCACTCTCTCAGGATGGGTGTTGGAGCAATTTTCACTTGGTGTACAAAATTCTTTTCCAACCATTTGATTGGTCtacaaaatttatatcatccgctcaaccaatcagatgtaaaGGCTTAGTTAATCCTGTAGCCAAGGTTTTTGAGTTGTGTTGAATTCTAGGTCCAATGTTATTATATTTGCCTTTATCCGATTAccttttgtggtttttttgttgagaCATCACATTAATGAATCAAAGAGCACTCCTTTCTGGCCCCCATCCATGTTGTTGTACATTTGGCTCTGGTTTTTCAAAGGTCAGGTAATGCTATTTACTGGATAAATTTCCATCCACTGGATAATGCTGTATGTTTTGCTATCTCTTATCTGCTGGATGGCAATTTTTCtgttggatagtgttatctgCCCTTTTTACAACTGGGCTCTGTCCAGTAATATATCACAGATGAGgtcaaaatgtggtgaaaactaaacaaatgGCGCATGAGGCCCGGTCAAGTGTGTCACTGAAGTACTTACCACATATTGaagtcttctgtgatctattcTTATACAGACtaacagcaacatggaatttatttgttttttatgatgACAAAGCAAAAGTTTGTTAATGGCGAGGCCATCCATGCATCTGTTCTCCAATAAATCATGAACCATGagcaagaaccaatcaaaatacttgcataattcagcttattatataatttcaaataatgcACAGAGTATGTATCTTTTCAGGGAGGTATGTCACACTGAATTTCGCAGATTACCAGATGTGAttaagaatataattttttttctagtctgtttacttttgttgttggtggtgtttttctttcttttttttttttt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CX00	IST1 homolog OS=Mus musculus OX=10090 GN=Ist1 PE=1 SV=1
Q3ZBV1	IST1 homolog OS=Bos taurus OX=9913 GN=IST1 PE=2 SV=1
P53990	IST1 homolog OS=Homo sapiens OX=9606 GN=IST1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03398 all species →	Ist1	Regulator of Vps4 activity in the MVB pathway	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042277 all species →	Homologous_superfamily	Vacuolar protein sorting-associated protein IST1-like	Interproscan
IPR005061 all species →	Family	Vacuolar protein sorting-associated protein Ist1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12161 all species →	IST1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19476	IST1; vacuolar protein sorting-associated protein IST1	-	Endocytosis	ko04144	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.