Gene detail

Detailed information of RMX40463.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3643:42863...44757
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q84JE8	Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana OX=3702 GN=ZDP PE=1 SV=1
P21286	Uncharacterized 20.8 kDa protein in FGF-VUBI intergenic region OS=Autographa californica nuclear polyhedrosis virus OX=46015 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08645 all species →	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006551 all species →	Domain	Polynucleotide 3'-phosphatase	Interproscan
IPR006549 all species →	Domain	HAD-superfamily hydrolase,subfamily IIIA	Interproscan
IPR013954 all species →	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12083 all species →	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0046403 all species →	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404 all species →	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939 all species →	Biological Process	obsolete nucleotide phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08073	PNKP; bifunctional polynucleotide phosphatase/kinase	EC:3.1.3.32 EC:2.7.1.78	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.