Gene detail

Detailed information of RMX40762.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3589:74310...84062
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00020837

ATGGCTCACGAGTTCATGTTATTCGCCTTCACTTTGATGGGATTCCACTCATCTTTCTCACTGAGTGGAACAGGAGTACCGTTCTATCCGGTCTCTCCAAAGTTGATCAACTTGGCTTGTAAAAAGTGCCCGGCAGGATTCTCCACAGTGTGCAACCAAAATGAACAATCTCGTTGCGTAAAATGCGCTGAAGGAACATACTCTGAGCACGCCTCTCGCCGCGGAACATGCAAACGTTGCGCCAGATGTGGTTTGAATGAATTCGAGGTCCTTCCTTGCACTCTGACGTCGAATGTTGTTTGCAAAGAATGCAGCACATGTCCTCCTGGATTTGGGGTACTGAGGCCTTGCGAAAAGACAAAAGACACAGTCTGCAAGAGATGCCCTTTTGATAAAGATGGAATAGGGATCTATGAGGACACAGATTGCGGCAGAGGTGGAGTTGAAGATTACCTTGTCCACAATAGAAGCAGACATCACGAAGAGACGAAAGACCGTGTGACTGTTGTAAGAGCTGAGAACCCTTGGGTAGATGGCAGAAGGAATCCCAAGTTTCAACACAAATTGCCGGTTGCTGACAAAGAAGCAGACGAAAAACTCATCGTACCCGGGGTTCATTCTGTAAGCCCTTCCCCTCCAAGCTTATTCTCGTCGAGGACGCCAACTGATGCAATTGCACGGGGAACATTTCTCATAATTTCTCCCGTTGATAGTTTGCCTGCGTCGTCTCCACAGACAGAGAAAACAGTCTACGACAAGCGACACCCAACAGATCATGAAGTGCAAGGAGATGATGGGAACATTCCTCAAAGTTTATCGCAGAAGACTGGTCACAACAGTACAGACACAGCGAATCCGCGTAGGATATCTTCCGTTTCGTCATCTGAGTCTCTCAACGCTAATGATTTTGGAATGGACGAAGAGCTGGAGAATAGCACAAAGTCTCCCCAGGCAAAAGGAGACGGATTTAAATTGGGTACAGAAGGGGTGGTGGGCGACAACATGGACAAGGAAGTGATGCTTCCCGAGCCGAACTCTGCAAATGACCAAGAGATTTTCCCACACACTCAACACTGGCAGTGGATTGTGATTGCAGTAGTTGTCGTTGCTGTGCTAGTGGTTGCATCGGCACTCAATCGACTGAAACGCTCCAAGAAAACTAATGGGCGCCTCTTTGTCTGCCCCCGGTCAGACTGCAGACGTCCGCGTTGTATGACGCCATCCGACTGCTGTGATAGCACATCAATATCAAGTGCTGCAGGTTCATGGGCTGAAGAGGGTGCAAATGTCATAGGAGTGCCTGTTGACGTACATGAGTCTGATTCAAACCAACCTACGCTACACACCTTCCTGCCCTCTGAAAACACTATTGTAGCCGCTGATGTCCATCATACCACAGTATTTGATGTGTTCAACATAAGGTCGCTAAGATATCTTACTCAAGCAGAAGCCACGCTCGACAGCACTGGTGGGAAGTTGTCTGCGCCATATTCCGATGTGACGATTGCAGTTGATAGTGGTACGGTCCCAGAAGGAACTCACCAGAAGTTTTTCTTCCGAGTGGTCTATGACGAAACCTCTCTATTGCGGGACATCCCGGAAACACCTGATAGGACGCTAATTTCCCCCGTGATTGAGTGTGGACCACACGACATCAACCTGCTCAAGCCGGTTGAAATCACTGTTCCACATTGTCTGTTCTTTGACGAGATTAAGAAAGACTCGATAGCTGTTTACAGATGTGAGCAATATTCTGACAAAGGAACAATCCAATGGGAAAAGGTTCCATCAGCATCGGAGAAAAATGGCCAATCTAAGGCATGGTTCACGGTAAAAAAAGATTCCATCCACATTAAAACAAAAACCTTCTCTTTTTGGAGCATTTTTGCATGTGGTGGATCAAAAAAGAAGAGAGCGACTGTTTTCTTCAGCAGACCAAGCCCATCAAGCGATTTGATTTATCTCAGGTTCTACATCTACGGTGATAGCGAGGATTCAAAGAAGCGAGTTGAAACACGAGACAAAGAACGTTTTCCAGACTCGTGGAAGGCAGCTAAGGAGAAACCTTGTACGATACATAATGGCGGTAACAATATCGCTGTGAAACTCACAGAGATTCAAGACGGATGGGAGCTCGACAAGACTGGAGCTATTCAGACATACCCTTTCGAGATCGCGTATCACAATGGATTTCGCTCCAATGACTCATGCGATTTTGCTGTGAAACCCACAGGGAAAAATGTTAAACCATTTTCATGTGTTCTTTGGTTCCAGCAGGAGGAAACCAACAAAGAACACACAATCTATCTAAACCCAGGCTATGACCTACGCGAGACTATTCCCTCGTCTTCCAACGAAATCCAGCCCTCAAACGAATCAAGCGTGTTAGAAGAAACTTTTGCTTCAGAGAGGCGAGAGGAATGCGAAAGCGGCCAAAATATTGAAAACGGAACAAATACAGTAACTGCAGATGTTACAGGAGATGCTTTGAGGCAAAGTTATGCCTCGTTAGGCAGTAATGACGAGCCTGTCACAGAAAGACACTTACTTTGCGTACATCAAAGGATTGCGAGATGGGAAACAGTTCTTCGGTATCTGGGCTTGGAGAATGTCAGAATAGAAGTTCTAGACGCGGAAAATAGGACAATTTCGGAAAAATGTTATCAAGGGTTCCTAATATGGATGAGAGGGGAAAGGAATGCTTCGACGAGAGAGCTTTGTGACGCCTTGCAACGCGCAGATTGTCGGGAAGCGTTGGATCAGTTGTCGAGAGAGGGGTTAGTAAAAGAGGAACAGGCTAAAATCACAGATGAAAAAAATTCAAATAACTGGACAACTGTGTGA

Transcript

rna-pdam_00020837

CGGAAGGTCATTTGAAATCTTCAGTACATTGTTAAGTCAGGGCTGTGCCGAAACCTTTCAGTTTCATTGTTCTATCCTAATTTTCTAAGCTATTCGGAGACAGAAAACGAAGACCAAAAGTGCCACAGGCGTTCATACCGGAAGAAAGAGGCAATCTATCATTTATTCACCTCGCTAACAGATGTAGGAGATCAGGAACGCAAGACAAATCGTCTATGGTGCAATAGCGTTTCAAAATGGCTCACGAGTTCATGTTATTCGCCTTCACTTTGATGGGATTCCACTCATCTTTCTCACTGAGTGGAACAGGAGTACCGTTCTATCCGGTCTCTCCAAAGTTGATCAACTTGGCTTGTAAAAAGTGCCCGGCAGGATTCTCCACAGTGTGCAACCAAAATGAACAATCTCGTTGCGTAAAATGCGCTGAAGGAACATACTCTGAGCACGCCTCTCGCCGCGGAACATGCAAACGTTGCGCCAGATGTGGTTTGAATGAATTCGAGGTCCTTCCTTGCACTCTGACGTCGAATGTTGTTTGCAAAGAATGCAGCACATGTCCTCCTGGATTTGGGGTACTGAGGCCTTGcgaaaagacaaaagacaCAGTCTGCAAGAGATGCCCTTTTGATAAAGATGGAATAGGGATCTATGAGGACACAGATTGCGGCAGAGGTGGAGTTGAAGATTACCTTGTCCACAATAGAAGCAGACATCACGAAGAGACGAAAGACCGTGTGACTGTTGTAAGAGCTGAGAACCCTTGGGTAGATGGCAGAAGGAATCCCAAGTTTCAACACAAATTGCCGGTTGCTGACAAAGAAGCAGACGAAAAACTCATCGTACCCGGGGTTCATTCTGTAAGCCCTTCCCCTCCAAGCTTATTCTCGTCGAGGACGCCAACTGATGCAATTGCACGGGGAACATTTCTCATAATTTCTCCCGTTGATAGTTTGCCTGCGTCGTCTCCACAGACAGAGAAAACAGTCTACGACAAGCGACACCCAACAGATCATGAAGTGCAAGGAGATGATGGGAACATTCCTCAAAGTTTATCGCAGAAGACTGGTCACAACAGTACAGACACAGCGAATCCGCGTAGGATATCTTCCGTTTCGTCATCTGAGTCTCTCAACGCTAATGATTTTGGAATGGACGAAGAGCTGGAGAATAGCACAAAGTCTCCCCAGGCAAAAGGAGACGGATTTAAATTGGGTACAGAAGGGGTGGTGGGCGACAACATGGACAAGGAAGTGATGCTTCCCGAGCCGAACTCTGCAAATGACCAAGAGATTTTCCCACACACTCAACACTGGCAGTGGATTGTGATTGCAGTAGTTGTCGTTGCTGTGCTAGTGGTTGCATCGGCACTCAATCGACTGAAACGCTCCAAGAAAACTAATGGGCGCCTCTTTGTCTGCCCCCGGTCAGACTGCAGACGTCCGCGTTGTATGACGCCATCCGACTGCTGTGATAGCACATCAATATCAAGTGCTGCAGGTTCATGGGCTGAAGAGGGTGCAAATGTCATAGGAGTGCCTGTTGACGTACATGAGTCTGATTCAAACCAACCTACGCTACACACCTTCCTGCCCTCTGAAAACACTATTGTAGCCGCTGATGTCCATCATACCACAGTATTTGATGTGTTCAACATAAGGTCGCTAAGATATCTTACTCAAGCAGAAGCCACGCTCGACAGCACTGGTGGGAAGTTGTCTGCGCCATATTCCGATGTGACGATTGCAGTTGATAGTGGTACGGTCCCAGAAGGAACTCACCAGAAGTTTTTCTTCCGAGTGGTCTATGACGAAACCTCTCTATTGCGGGACATCCCGGAAACACCTGATAGGACGCTAATTTCCCCCGTGATTGAGTGTGGACCACACGACATCAACCTGCTCAAGCCGGTTGAAATCACTGTTCCACATTGTCTGTTCTTTGACGAGATTAAGAAAGACTCGATAGCTGTTTACAGATGTGAGCAATATTCTGACAAAGGAACAATCCAATGGGAAAAGGTTCCATCAGCATCGGAGAAAAATGGCCAATCTAAGGCATGGTTCACGGTAAAAAAAGATTCCATccacattaaaacaaaaaccttctCTTTTTGGAGCATTTTTGCATGTGGTGGATCAAAAAAGAAGAGAGCGACTGTTTTCTTCAGCAGACCAAGCCCATCAAGCGATTTGATTTATCTCAGGTTCTACATCTACGGTGATAGCGAGGATTCAAAGAAGCGAGTTGAAACACGAGACAAAGAACGTTTTCCAGACTCGTGGAAGGCAGCTAAGGAGAAACCTTGTACGATACATAATGGCGGTAACAATATCGCTGTGAAACTCACAGAGATTCAAGACGGATGGGAGCTCGACAAGACTGGAGCTATTCAGACATACCCTTTCGAGATCGCGTATCACAATGGATTTCGCTCCAATGACTCATGCGATTTTGCTGTGAAACCCACAGGGAAAAATGTTAAACCATTTTCATGTGTTCTTTGGTTCCAGCAGGAGGAAACCAACAAAGAACACACAATCTATCTAAACCCAGGCTATGACCTACGCGAGACTATTCCCTCGTCTTCCAACGAAATCCAGCCCTCAAACGAATCAAGCGTGTTAGAAGAAACTTTTGCTTCAGAGAGGCGAGAGGAATGCGAAAGCGgccaaaatattgaaaacggAACAAATACAGtAACTGCAGATGTTACAGGAGATGCTTTGAGGCAAAGTTATGCCTCGTTAGGCAGTAATGACGAGCCTGTCACAGAAAGACACTTACTTTGCGTACATCAAAGGATTGCGAGATGGGAAACAGTTCTTCGGTATCTGGGCTTGGAGAATGTCAGAATAGAAGTTCTAGACGCGGAAAATAGGACAATTTCGGAAAAATGTTATCAAGGGTTCCTAATATGGATGAGAGGGGAAAGGAATGCTTCGACGAGAGAGCTTTGTGACGCCTTGCAACGCGCAGATTGTCGGGAAGCGTTGGATCAGTTGTCGAGAGAGGGGTTAGTAAAAGAGGAACAGGCTAAAAtcacagatgaaaaaaattcaaataactgGACAACTGTGTGATACGGAGCATCCTGTGAGACTCTGACCATGGATCCTAACAGTCAGTTGGAAGAAACATGACAGTGAGTTCCTCGTTTGCTTTTCGACTCAAGATTCCTCTTCTTCGAAGTCGGTGATACCAAAAAGGAAGAATAACTCCTATCTCGGCAATCGGATGAACTCAACGGATTTAAATTTCAGTAAAGAATGCCACATAAAGCTGGAAAACCTTAGAAAACAAGGAACTTTGCAAGCAGCCAACGTTTTCATGCTTTAGTTGAACACATTCGTTGAAACTTAACTCGTTCCATCGACCTATGCATGTCTCAACTCATGCTCAGGTGTGAACAAAATCTATAGAcggggtaagtttctatagaaactgtggtgccgcatcggtgggagagtataactaagttgatgacgtaaattggccgccgAAACGGTTTCAAACCtgcgtttcgagcgttagcccttcgt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07521	UNC5; netrin receptor unc-5	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.