Gene detail

Detailed information of RMX41044.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3539:530590...541094
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003282

TATACATTCACTTGAAGTGAAAGAACCTTCGGTGTGGAAcggaattttttccttctctgcAACGTCATCAGCCTTAATCTTTTATCAAAATGGAAGAAGCCTATCACTGTCCCGACCAAAAAAAACTCCAGGCCTTGAGAGACATGGCCAACCTGCTTCGAATTCACAGCATCGAATCCACCAACACTGCTGGATCGGGgCATCCAACTTCTTGCTGTTCTATCGCAGAAATTATGTCTGTTCTTTTCTTCCATACAATGCGCTATAAAGTTGCTGATCCTCGAGATCCAGCAAGTGACAGATTGATCTTATCTAAGGGTCATGCAGCTCCCATTCTCTATGCAGTGTGGGCTGAAGCTGGTTTGTTTCCAGTATCAGATCTGGCCAAGCTTCGAACAATTGACTCTGATTTGGAAGGTCATCCCACCCCTCGGCTTAATTTTGTGGACTTTGCCACTGGTTCATTGGGTCAAGGATTGAGTTGTGCTGCTGGAATGGCTTACATGGGAAAGTACTTTGACAAATCAAGTTTCCGCGTGTACTGTGTGATTGGTGATGCTGAGTCAGCAGAAGGTTCTGTCTGGGAAGCCTTGAACTTTGCAAGTTACTACAAACTTGGTAACTTATGTGCAATTTTTGATATCAACCGTCTTGGCCAGAGTGACCCCACAATGCTCCAGCATGACTTTGAAACTTACAAGAAAAGGACTGAAGCTTTTGGGTGGAACACCATTGTAATAGATGGTCATGATGTAGAAGCTGTCTGCCGTGCATTTCATGAAGCAAGCGTCAGCCAAGACCGCCCCACTGCTATTTTGGCAAAGACCTACAAGGGAAAAGGTGTCCCAGGGGTTGAGGATTTGGAGAATTTCCATGGCAAAGCCCTTGGTGATAAAGGTAAAGCAGCAGTAGAGCTACTCAAGAAATCAATGAGCAACAGTGGCCCTCATGACCTTCGACCTCAGCCTGTGACTGATACTGTACCAGCAGTTGAACTTGATGCAAAACTATCCGAGCCACCCAACTATAAGATAGGACAAAAGGTTGCTGTTCGTCGAGCCTACGCCAATGCCCTGGTGAAAATTGGCCGCACTTGTGAGCGCGTGCTAGCCTTGGATGGAGACACTAAGAACTCCACTTACTCTCTGAACTACAGGAAGGAATTCCCTGATCGGCACGTGGAGTGCTTTGTGGCTGAGCAAAACATGATTGGCGTTGCCATGGGATTAGCTGCACGTGATCGTGCAATCACTTTCTCCAGCACTTTTGCCGCCTTTTTTACCCGCACGTTTGACCATTTGCGCATGGCATCTGTTTCTCAGACCTCTGCCAACTTCTGTGGATCTCACTGTGGTGTTTCTATTGGTGTGGATGGTCCCTCCCAGATGGCCTTGGAGGATATTGGCATGTTCCGTTCTATACCCAACTGTGTGGTGTTCTACCCAAGTGATGCTGTCTCGTGTGAACGCGCGGTTGAGCTGGCAGCTAATTACAAGGATATGACCTTCATCCGAGCCACACGAGGCGACACTCCTGTGATTTACGAGAATGAAGAACCATTCGCGGTTGGCAAAGCTAAAATCGTCCGCGAGGATGCTCGTGACTCGGTACTTGTTATTGGAGCTGGTGTAACCATGATCGAAGCATTAAAAGCAGCCGATGAACTGAAGAAAGAAGACATTTATATCCGAGTGATGGATCCGTTCACTTTGAAACCTGTTGACAAAGCCGGTATCATTGTACACGCAAAGGCTGTTGGGGGAAAAATATTGACAGTGGAGGACCACTACATTGAAGGTGGTATTGGTGAGACTGTGGCTGCTGCTGTGGCGGAAGAGACTGGTATTACTGTGCGCATGTTGGCCGTGCCCCGCATTCCACGCAGTGGGCCTGGGGACGCCTTGTTGGATCTGTACGGTATCAGCGCGAAGAGCATCATCAAGTCTGTCAAAAGCTTGTAAATGGTTTGGAAACATACGTGATCATGTTGACTTCGCGCTACATCTAAATTGAGCTGGCATTTAGGGAAACCGATAggaatacattttttaagttttttttttctccaatcaATCTCTGAACAATTATCCAATAGCGATTGTTTCGAtagggattttttttagtttaatttcTGGTCGACCAAGTTCATTTAGTTCCATTACAAACCGATGAAATGGCTTGAATATAGGACCATTTTCAAATTGAGTTGTAATCCATCAAATTGGGAAGgtaaacatatatttttgtgGTAGCCTGGTtagaaaagtaataaattcATTGATCAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6B855	Transketolase OS=Bos taurus OX=9913 GN=TKT PE=2 SV=1
P40142	Transketolase OS=Mus musculus OX=10090 GN=Tkt PE=1 SV=1
P50137	Transketolase OS=Rattus norvegicus OX=10116 GN=Tkt PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan
PF00456 all species →	Transketolase_N	Transketolase, thiamine diphosphate binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005474 all species →	Domain	Transketolase, N-terminal	Interproscan
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR051424 all species →	Family	Transketolase-like	Interproscan
IPR020826 all species →	Binding_site	Transketolase binding site	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR049557 all species →	Conserved_site	Transketolase conserved site	Interproscan
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43195 all species →	TRANSKETOLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004802 all species →	Molecular Function	transketolase activity	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00615	E2.2.1.1, tktA, tktB; transketolase	EC:2.2.1.1	Biosynthesis of ansamycins	ko01051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.