Gene detail

Detailed information of RMX41269.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3528:85413...93637
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00012371

GTACCTTCATGTAAAGCGAAAGAAGATATGCGTAGAATGTCAGGTGTTGCGATTCCCCTCTTTTTATTCTAAATAACTGAATATGACATTTGTGTTTCCGTCCATAAATGGCACGGTGAAGCCAAGAGAAAGAAGTGGTCATGTAGCGGTTCACCATGATGGTTATCTAGTAGTTTGGGGAGGCTATTGCAACGGTGATCCTGAACAGTTTCCTGGATTGCAGTTTCTTGTCGACAGGTATCATCCCAGTAATGAAGTTTGGTTGTACTGCATTGAGACTTCTGCATGATAccagataaaaatgaaagccaTTTACACTCTCAGAGCAAGTCACTTGTCATTAAATAATTGTGTTTTTAGGAAACATGTTGAAACAAGTGGAGACATACCTCCACCCATGTCAGGATCAACAGCTTGTGTGATTGGTGGCAAATATATGTACATATTTGCTGGGCATCATGATGAAGGACCCTCTTCAACAgtttttgttttagatttgaacaaatttgtGTGGCAAAATTTGACAGAAAAGATTGAAGGTAATCCCCCTTCAGACAGGGACAAGCTGTGTTGTTGGACACACAATGATTTAATAGTGTATTTTGGAGGGTATGGAATACCTCCAGATCCTCATAAAGTGGATGAGTCTTGTGgatttttcacatttaataCCAGTGTTGAGGACCAATTCACTGACATCAGAGGATGGAACAGTCACATGTTTGTTCTGGATACAGAACGTTTAACATGGAGCCAACCACAGACAAAGGGGAGAGCCCCCACACCAAGAGCAGCACAGGCTGCGGCTAAACTTGGAAATATTGCTTATATCTTTGGTGGAAGATACATGGAACAACGACGTAATGATTTGCATGCCTTTGATATGGACAGCATGGAATGGAGTGGCAGTATTCCAACTACAGGTAAAGTGCCAGATGGAAGAACATGGCATTCCCTATCTGCTGTCAGTgacaaacatttatttctttatggAGGCTTTAACAATCAAGGAGAAGCATTAGgcGATGCTTATACTCTTGACACCTCAACAATGATCTGGTTTCAACTCAGTGTCCCTTCGATACAAAGTAAACCTATGACTCGAATGTGGCATACAGCTTGTTGTACAACTTCTCCTGGAGAGGTTCTAATTTTTGGAGGATGTGCCACATCAGTGTTAATTCTTGAACAGgagCACTGTGACAGTATCCTGATCTTTAGGTTTACACCTCAGCCTTTGAACttaTTATGTGCAGATACAGTGGTCAAGTGTTATTCAACCCTTCAAAAGCAGCTCAGATCCCTCCCTAAGAATCTGCTTATGTCACTCTTTCTGCACAGAAGACTGCAGGCCAgtggaaaaatataaatgacaTGCGTCAGAATCTCTAGAGTTCTAGTCACAAACGTTAGACTAGATCTTTAGTCACGGCATCGGACATGCCTGGTTGCtaatttataattatgttAGAGAATTCTATGAGGCACcgtaagaattttttttgcctaaaAGTTGAACAAGTTTAATGAGATTTGGGATGAACAGTTTGAAGCGTGTACATGTGAGCTACAGTAGGctgtttctttcaatattttggtgTCTTTTTGGGCCTTGAATGTGCCCTGTGCTGTTTTAGATCAAGTGTTAGTAAGTCTCAAGATTTGTAAGAATCGTTTGTGAAAGTGAATCACTGGCGATGAATCAAATTCGCACTTTTCCCGCCACATGGTGCACGTGTTTGTGAAGCTATTAATTTTCTCCAGTTTAGTGCTAGCACTATAACTTGTGTAAATACGATAAAATGTTACATTAAACTATAATTTATATATCAGATATTACGCacaatttcagtttgaatttCCTGATATCAGACGCCATTAACATGCATTTAGCTAAAACATCAGTAAAATAGATATGTAACGTGGAGTTTGTCTAACATCCGGGAAAGTGTCTTTCGAATGTCACTCGCCAGAAAAGGCCTGAGAATGGACAGATCGACAACTTGGATCTTAGAATCAAATTCACGTTGGTAATCGAGATATAGAGCCTAGAGCATCAAACTGGGAATTAAAAACTTGAGTTGCTGTGCTGGATTCGTTGCGTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80YG3	Kelch domain-containing protein 1 OS=Mus musculus OX=10090 GN=Klhdc1 PE=2 SV=1
Q8N7A1	Kelch domain-containing protein 1 OS=Homo sapiens OX=9606 GN=KLHDC1 PE=1 SV=2
Q5EA50	Rab9 effector protein with kelch motifs OS=Bos taurus OX=9913 GN=RABEPK PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13854 all species →	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR052257 all species →	Family	Kelch domain-containing E3 ubiquitin-protein ligase complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46228 all species →	KELCH DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25807	KLHDC2; kelch domain-containing protein 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.