Gene detail

Detailed information of RMX41555.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3487:231180...245290
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00008648

ATGACCGACAGGGTCAAAGTAAAGGCCAGATTCAATGGCATTGCTCGGCGATTCGAGATCAGTTCTCCCACATCCTGGGAGGAATTAACGTTTCAAATAAAAGAACTGTTTGATGTGCAAGATTTCACGTTGAAGTATATTGACGACGAAAACGAATTGGTCACGATTGGAACACATGTGGAACTTGAAGAAGCACTAAAGGTCACTCAAAAAACAGGTTTATTTAGACTAGTAGTGGAGAGTCCCTCTGATCCACAAACATCTGTGCCAGGAATTGAAAGTCTTAAAGATTTACTGGTAGAAAGTGAGGAAGACACACCTGTGCTTCAAGCCCAGAAACGTAAGTTAATCTTCAACACTACCACTCCATCAGAGCTAAGCAGTGCCTACAAGACGGCAAAAATGGATGATGCAGAATGCCAAGAAACTGTAATCAAAGCAAACTCAAATTTTCAAGAAGCTGAAAAAGACTCCCAATTTGAGACAGCTGAAAAGGAACCATTACCAACTGAGGGGAATGAAATAGTGAATGGCAGAGGTGATTCAAAAGTGGTAGATGAAACTGTGGAATCTGCAGGTGTACTGCAGAATCCTTCATCCACAGGGCCACCAACACATGAGAGGATAGCTGACGAGTCCACAGCTGACCAATATATCCCTTTAATTGAACTAATGCAGCCAGTTCCGAGTAATCCTTCTCAAGCTTCAACTTCATCTTTTGGGAAACCCAGAAGAGCTCCAAGAAAACCTAAGGCAAAGAGCTGCTATTTACAGTTGGCTGAGAATATTTCTGATGAGTTGGCAACCATGAATGAGAAGCTTCACAAACGATTGCGGAGTTCTCTAGATGTTTTAAAGAGTGAAGAACATGTTCCTATGGAGGGACTTGGAGATTTTGGAGAAGATTCATATGTGTTTGTTCCACAGCAAGGTGATATGACTGCTGCTACTGGAACTGTGAAGGTAGAGAATGAGAAGTTGTTGTCTTCTCCCAATGAATCAAATGAAAGCCAACCAAAAGCAGAAGGAGAAGGGGAAGTTGAAATGACTGCCAATCCTGATGTTTTGAACCCATCAGCCAGTGGCAACAAATGTAATCAGGGCAGTGTTGATCAAGAAAAAATGGCAGAAGTCGTTCAACGAGTGGTGCAAGAGTCAGTGCCGCAAATAGTGGAGGCAGCAATGAAAAATCTGCAGCAACTTCACCTCAGCAGTCCCTCACCAAGCTCCTCGCCCACACAAACATGTGACATATTGGCCTGGGGTAAAGTTGTTCATAAAGGTATAGTTTGTGCTTCATGTGGCCAAGCTGTCTGTGGAATCCGATACAAGTGCTGTTTCTGCAGAGATTACGACCTGTGTGAAGTGTGTGAAGGAAAAGAAGGGATTCACGATCCTAATCATTTCTTTGCAAAGCTGCGAAACCATGTGCCAGGAATAGGACTGAAAAATGGAGAAATGGTACCAGTGTTGAAACATTTTGTGTACAAGATGACAGTTAAAGAAGGGTACAAAAAGGAGAAGAAAGAAGAGAGAAGGAAGGAAAAAGATGAAAAGAAGGAAAGGAAGAAGGAGAAACTGATCATTAAGGAAAGAGAAAAAGAGAAGAGAGATGTTAAAAGAAAGATAAAGAAGGAATGGAGGCAAATACGAGAGAGTGATGCTGACACTTCTATGGGAAATTGCCTTAATGCAGAGTTCATAGCCGATGCCAGCATACCTGACGGTACAGTTATAAAGGCAGGACATAAGTTTCTGAAACGTTGGGTTGTGAAGAACAAAGGTCGAAAGTGGAATGCTAAGACAGTGCTTCAGTGTCTAGAGGGTAACATCCTAGTTGCTACAGAAGAAAACAAAGTTGAGGTACCGTCCTTGAAACTAGATGAAGAAGGTGAACTTATGGTGCCGTTCATTGCTCCATTAGCACCTGGGCGTTATGAAAGTAAATGGCAGCTGTGTCATCACAGTATCCCATTTGGCCCTCTGTTCTGGTGTCAGATTGTTGTTGAAGAGGAGAAAGTTGAAAGTGAGATGCTGCTTAATCAGGACAGCCCAACAGAGACAGAAGCCCCTAAGTACCCCAGTTATGACAGCACCACCCTGATTAACAGTGCATTCCCTGAACGCGACACCTCCCCTGTCAGGAAGCTTGTGGAGGACTTAGTTCTTCAGGAACCAATGGCCGAGGAACCGGACGAAGCATCGGGATCAGACGTATACCTTAGTTCTACCGAGGACACAGCAGAATTCGAGAAGATTAGGCTGCCGTTAGAATCTGTGACCGTGTCCTGCCAAACTGCTCAGGTCTCCGAGCTGGAGTGGGATGCAGCTGGGTGTGGCTTGGAAGCAGAGTCCTTTGACAGAGCTGAGATAGAGGAGCTCGTGGCTTGTGCTGTGGAAGATGCAACAAGTGACGTCGAAAGCATCGCCACTGATATGTCCGACGAGTTCATGGTGGTACCCGTCCCTCCTTGCTTTGACCCAAACGCCCCCCTGACTGCAGATCCCTCCCCCGTAACTGTTAGTGTCACAGAATATAAGCAAATGACCGAGAGTCAACAAAGAGCATTTTCATTTACCCTCAGCGATCAGCCCCCTCTTAAAACCGAGCTTGATAGAGTTCCTGGTACTACTTTTTTCATCGATCAAAGGAGTGTGAGCAGTGACGACACTAGTATGGAGACAATTTCCAGGACCACTGTCGATGAGGATGACAAAGTGTTTGAACCGTTAAATGACTCAATCCCACATCTTCCTGATCCACCTGTGTCAGAACCACGGTTGGAGGGTCCTATAGCACCGGAGGAACCTCCAAGAGACTTGAACTACGAACCCACTCAACCCGAAATGCCCATCATAACTGAGCCTGTAAACGTCCCTGCTCCTGAACCAGCGGCACGCGATGAGGACGAAAGTGATGTTAATGAAGATGACAACGGTGATAATGATGATGAGAGGACGGAGGCTCCTGCAGTACCAGATGTCACCTCGCAGCCAATAGCAGCACAACCTGTCTCCAGCAGTGATGAACCCGCTCCTGTTGCCTTGCAGCCAGAACCATCCTCTCCTGTCGTGATGGTCCCTACTACTGTTCCCGTTAGTGAAGTCATGGTTGTGAAGCGAGTCCGTCAGAACAGTGCTAGTAGTGATTTTGCTTCCAGTGTGGTGTCCGATGTATTGTCCACGGCGATAGATGCCGCAGCCAGCGCAGGAAGGGCCGTTTACACTACTGTGGAGAATTTCCTTTCTGGTGTACCAAAACCTGAGGCGACTGCAACATACAATCCCGCGCAAGGATGTGAAGTGTCCGTTAATCGGCCATCAGAGGCGGAACCATCTTCTAATGAGGCTCCTGTAGTAAACGAAGTAACCTGGCCTCCTGGTCGATCCACTTCTACCTGCCATGAATGTCTAATGGAGATGGGCTTTTGCAATCGCAGGCTCAACGAACAGCTGCTGGAGAAACATAACAACAATGTAGCGAACGTTGTCAGTGAATTGTTGTCTTTAACTGACAACGACTGGTCGACGCGAAGGCACTAA

Transcript

rna-pdam_00008648

TATGTCgtcacttttgttttggtcgAAGGAAGTTGCTGAACAGGCGGATTTCTAGAATTGCACAGTAAACGAAAGGGTTTTTACCCGTAATATTTTCGTTCGAAGGCTCATTTATTTCTTGGAAACGCCTCGAGTTATTCAAATGACCGACAGGGTCAAAGTAAAGGCCAGATTCAATGGCATTGCTCGGCGATTCGAGATCAGTTCTCCCACATCCTGGGAGGAATTAACGTTTCAAATAAAAGAACTGTTTGATGTGCAAGATTTCACGTTGAAGTATATTGACGACGAAAACGAATTGGTCACGATTGGAACACATGTGGAACTTGAAGAAGCACTAAAGGTCACTCAAAAAACAGGTTTATTTAGACTAGTAGTGGAGAGTCCCTCTGATCCACAAACATCTGTGCCAGGAATTGAAAGTCTTAAAGATTTACTGGTAGAAAGTGAGGAAGACACACCTGTGCTTCAAGCCCAGAAACGTAAGTTAATCTTCAACACTACCACTCCATCAGAGCTAAGCAGTGCCTACAAGACGGCAAAAATGGATGATGCAGAATGCCAAGAAACTGTAATCAAAGCAAActcaaattttcaagaagcTGAAAAAGACTCCCAATTTGAGACAGCTGAAAAGGAACCATTACCAACTGAGGGGAATGAAATAGTGAATGGCAGAGGTGATTCAAAAGTGGTAGATGAAACTGTGGAATCTGCAGGTGTACTGCAGAATCCTTCATCCACAGGGCCACCAACACATGAGAGGATAGCTGACGAGTCCACAGCTGACCAATATATCCCTTTAATTGAACTAATGCAGCCAGTTCCGAGTAATCCTTCTCAAGCTTCAACTTCATCTTTTGGGAAACCCAGAAGAGCTCCAAGAAAACCTAAGGCAAAGAGCTGCTATTTACAGTTGGCTGAGAATATTTCTGATGAGTTGGCAACCATGAATGAGAAGCTTCACAAACGATTGCGGAGTTCTCTAGATGTTTTAAAGAGTGAAGAACATGTTCCTATGGAGGGACTTGGAGATTTTGGAGAAGATTCATATGTGTTTGTTCCACAGCAAGGTGATATGACTGCTGCTACTGGAACTGTGAAGGTAGAGAAtgagaagttgttgtcttctCCCaatgaatcaaatgaaagCCAACCAAAAGCAGAAGGAGAAGGGGAAGTTGAAATGACTGCCAATCCTGATGTTTTGAACCCATCAGCCAGTGGCAACAAATGTAATCAGGGCAGTgttgatcaagaaaaaatggcAGAAGTCGTTCAACGAGTGGTGCAAGAGTCAGTGCCGCAAATAGTGGAGGCAGCAATGAAAAATCTGCAGCAACTTCACCTCAGCAGTCCCTCACCAAGCTCCTCGCCCACACAAACATGTGACATATTGGCCTGGGGTAAAGTTGTTCATAAAGGTATAGTTTGTGCTTCATGTGGCCAAGCTGTCTGTGGAATCCGATACAAGTGCTGTTTCTGCAGAGATTACGACCTGTGTGAAGTGtgtgaaggaaaagaaggGATTCACGATCCtaatcatttctttgcaaagCTGCGAAACCATGTGCCAGGAATAGGACtgaaaaatggagaaatggTACCAgtgttgaaacattttgtgtaCAAGATGACAGTTAAAGAAGGGTacaaaaaggagaagaaagaagagagaaggaaggaaaaagatgaaaagaaggaaaggaagaagGAGAAACTGATCAttaaggaaagagaaaaagagaagagagatgttaaaagaaagataaagaagGAATGGAGGCAAATACGAGAGAGTGATGCTGACACTTCTATGGGAAATTGCCTTAATGCAGAGTTCATAGCCGATGCCAGCATACCTGACGGTACAGTTATAAAGGCAGGACATAAGTTTCTGAAACGTTGGGTTGTGAAGAACAAAGGTCGAAAGTGGAATGCTAAGACAGTGCTTCAGTGTCTAGAGGGTAACATCCTAGTTGctacagaagaaaacaaagttgagGTACCGTCCTTGAAACTAGATGAAGAAGGTGAACTTATGGTGCCGTTCATTGCTCCATTAGCACCTGGGCGTTATGAAAGtaAATGGCAGCTGTGTCATCACAGTATCCCATTTGGCCCTCTGTTCTGGTGTCAGATTGTTGTTGAAGAGGAGAAAGTTGAAAGTGAGATGCTGCTTAATCAGGACAGCCCAACAGAGACAGAAGCCCCTAAGTACCCCAGTTATGACAGCACCACCCTGATTAACAGTGCATTCCCTGAACGCGACACCTCCCCTGTCAGGAAGCTTGTGGAGGACTTAGTTCTTCAGGAACCAATGGCCGAGGAACCGGACGAAGCATCGGGATCAGACGTATACCTTAGTTCTACCGAGGACACAGCAGAATTCGAGAAGATTAGGCTGCCGTTAGAATCTGTGACCGTGTCCTGCCAAACTGCTCAGGTCTCCGAGCTGGAGTGGGATGCAGCTGGGTGTGGCTTGGAAGCAGAGTCCTTTGACAGAGCTGAGATAGAGGAGCTCGTGGCTTGTGCTGTGGAAGATGCAACAAGTGACGTCGAAAGCATCGCCACTGATATGTCCGACGAGTTCATGGTGGTACCCGTCCCTCCTTGCTTTGACCCAAACGCCCCCCTGACTGCAGATCCCTCCCCCGTAACTGTTAGTGTCACAGAATATAAGCAAATGACCGAGAGTCAACAAAGAGCATTTTCATTTACCCTCAGCGATCAGCCCCCTCTTAAAACCGAGCTTGATAGAGTTCCTGGTACTACTTTTTTCATCGATCAAAGGAGTGTGAGCAGTGACGACACTAGTATGGAGACAATTTCCAGGACCACTGTCGATGAGGATGACAAAGTGTTTGAACCGTTAAATGACTCAATCCCACATCTTCCTGATCCACCTGTGTCAGAACCACGGTTGGAGGGTCCTATAGCACCGGAGGAACCTCCAAGAGACTTGAACTACGAACCCACTCAACCCGAAATGCCCATCATAACTGAGCCTGTAAACGTCCCTGCTCCTGAACCAGCGGCACGCGATGAGGACGAAAGTGATGTTAATGAAGATGACAAcggtgataatgatgatgagaGGACGGAGGCTCCTGCAGTACCAGATGTCACCTCGCAGCCAATAGCAGCACAACCTGTCTCCAGCAGTGATGAACCCGCTCCTGTTGCCTTGCAGCCAGAACCATCCTCTCCTGTCGTGATGGTCCCTACTACTGTTCCCGTTAGTGAAGTCATGGTTGTGAAGCGAGTCCGTCAGAACAGTGCTAGTAGTGATTTTGCTTCCAGTGTGGTGTCCGATGTATTGTCCACGGCGATAGATGCCGCAGCCAGCGCAGGAAGGGCCGTTTACACTACTGTGGAGAATTTCCTTTCTGGTGTACCAAAACCTGAGGCGACTGCAACATACAATCCCGCGCAAGGATGTGAAGTGTCCGTTAATCGGCCATCAGAGGCGGAACCATCTTCTAATGAGGCTCCTGTAGTAAACGAAGTAACCTGGCCTCCTGGTCGATCCACTTCTACCTGCCATGAATGTCTAATGGAGATGGGCTTTTGCAATCGCAGGCTCAACGAACAGCTGCTGGAGAAACATAACAACAATGTAGCGAACGTTGTCAGTGAATTGTTGTCTTTAACTGACAACGACTGGTCGACGCGAAGGCACTAAAGAAGAAAGCTGGGCGGctaatttttatcttcaccTTTTATCTGTTATCTTTGCAtatattgatgttttttttttctgttgggAGCGGAGAGtcttattatttcctttaaatttagCCCTTTGGACCTCGCCTTGAAGACCGAGAAGGCAAGAACATCTACGCGTTTTGAAGCTTTGTCTTGGGTTTTGCATCCTAAGGGAATTAGCCAAAGTTTTCAATCTTGGTCGATCTTCTCTATCCAAGGCCACCGTTGTTCCTAACAGTTTTAACGTTccttttattgcatttttctctcttgCCAAAGTAGTATTTTGTAGACTCCTCTAAGTCGCAGATAGATTTGCACGTTGCTAAAATAGCTCCTAAATACTGATATAGCTCCTGCAAACTTCGAAAAACGCTATGTAATTTGGATGAATTCGAATAACTCGGATTAACTTTTATAAAAGGTTGCTTTGTTTATACTTGCACTCAAGAGTCGTGGGGAATCTTTTCAGTCTTTAGGGTTGTTGGTTTTAGGAAAAAGAACGGTCCGTGAAAAGTTAAGGTTTTGGCCCTGCAGGTATcgcttttcatttgtttgtcaCGCAAACTTAAAAAGTCACGCAAACGTCTTTGACAGAAGCTCTCTAGCCGACCGCACTTTCGAATGATCATTTTGAACATCTTTGTTGCGGAAGGAATCTTCAGGTTCCTTATTTGTATATAGACACTGGAACGGTCTGTAAGCAGAGGTACATTGGTTAGGAATTTGTCGtttgattctgtttttttttttctattaagGATGAATCGCTAGCCAGGTCGGCGTGTCTTAATTGTAACGCGGAGTTCTTgggcaaatttttttgaaaagatgtAGTTTCAATTTCTTACCTGGCCACTTGTcatcttgaaaatgaacacGTCTTCATCTTCATATGACCAGTCCGATATATTTCTAATTTGTATACTTGACTTTATGGAATATACGTAAATAGTTATATCTATGAGGGTCACTGGATTGACTATATCCATGGTCAGTTAAGACAAGCAGTGTTAGAGTGAGCttagaaatgtaaataaatacttGGCAATCTGGGACCATCAGTCTGACCATTATGTTGTCTATGCGTGTACTTAAGCTCACCATTGGGGATGTGTCATGCTACTTTTTTTGTTCGTACCGCGTTTTTACAGCATTtctgtgatttcttttttttttttgaacggTCGCGCGGCAACATGAAATCGACTTGTATATGATAAAAGATCAAAATGTTGTGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD\|PB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00564 all species →	PB1	PB1 domain	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF16158 all species →	N_BRCA1_IG	Ig-like domain from next to BRCA1 gene	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR000270 all species →	Domain	PB1 domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032350 all species →	Domain	Next to BRCA1, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20930 all species →	OVARIAN CARCINOMA ANTIGEN CA125-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17987	NBR1; next to BRCA1 gene 1 protein	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.