Gene detail

Detailed information of RMX41623.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3475:208169...215087
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00008885

GTAGTGAAAAAGTACGGAACGTTGTGAAACTTTTAGACGTTGTTGCGCGAGATTACTCAACGAAAGGTCCTAGAAGAGGAAACGAATATTAATTTCTAAATCAGTCATGGCAGTCCCGACGGTTAACGGCGTAGCACACGatttacaaGTGGAAGTGAGCAACTTGACTTTAAATGGCATACCAGCAGAGAAAACTACAAAGGATATCACAGTTTTTCAACAGAAGACAGgAACATTTAAGGTCAAAGCGGGATTGGCACAGATGGCTAAAGGAGGTATTATAATGGATGTTACTACAGCAGAGGAGGCCAGAGTAGCTGAGAATGCTGGGGCATGTGCTGTAATGTCTTTAGAGAGAGTGCCAGCTGATATTCGTAAGCAAGGAGGTGTAGCAAGAATGACTGACCCTAAGagaacaaaagaaatcatgaaTGCTGTCACAATCCCAGTGATGGCTAAGGCCAGAATTGGACACTTTGCTGAAGCACAGATTCTGGAGGCTATTGGTGTTGATATGATTGATGAATCGGAAGTGTTGACACCGGCTGATGAGTCACATCACATTGACAAACATAAATTCACTGTGCCCTTTGTGTGTGGTGCAAGAGACTTGGGAGAAGCCCTTCGAAGAATTGCAGAGGGAGCAGCTATGATAAGGACTAAAGGACAAGCAGGGACAGGTGATGTTGCTGAAGCTGTTCGTCATGCAAGAACCATTCGCAATCAGATTCGCCATGCTCAAGCCCTAGACTCAGCAGAGTTGTTCACCTATGCAAAAGAGCTTAgagtttcttttgaacttcTTAAAAAGACTGCTGAAATGGGGCGTCTTCCTGTAGTTAACTTTGCTGCAGGTGGTCTTGCTACTCCAGCCGATGTGGCTTTACTGATGCAGCTCGGGGTGGATGGTGTCTTTGTTGGCTCTGGAATCTTTAAAAGTGACAACCCCAAGAAAAGAGCATGGGCAATGGCTCAGGCTGTCACTCATTATAACAACCCCAAAAAGCTTGCTGAACTCAGTGAGGATTTAGGAGAGGCTATGTTTGGAACGCCAGTTTCTGCTACTGCACACAAGTGATATGTTCTTACAAATTGTGTGCATAATTGCTAGCTAGATAGTATGGATTTTCTCTCAAATTCCATTGAAGCAAACAACTAtgggaaagagagagaaagaatcTTAACTAATAAATAACTAGTAGTATTTAAAGTGGTAgttataaatttctttaggGTAGTTCTGGGAATATCTAGTTTGGTAGAGGTTCTCTCAAGATGTTTCCTTGTCTTGTGAACTTGGTCATTGTTGTtgctgataaaaatttaaggtcTAATGATCAGGGTATAATAATATCACAAAATGCAATGTTAGATTTAAAGTCTCTCAAGGCATCCAAGGCTTTTTCTCATCccattttatttaatatgcttcttttaaatatatcattaGAAGTAGAATTAGTGACAAAGTGTTTCAGACGGTGCATTTAAGTGGTGTGCTGAATGCTGATGTATGTGATTTATCCTATGGTACACTCATTATTGCATAGCAACAGACCCACACTTCAACAGGCTTAGATTAACctgtatttaaattatttttatttatacaaTTGATATGCTGCATGTATACAAATTACTTGTAGTATCATTAGAGGTTTAAACAATGTTGGTTATATTATTGTGAATATAACTGTGGCAATCAGGTAACATGGTTACACTGACTGACTCAGACACTGGGTTTTCAGTTATTGGGAGTAGTGATCAGAGATTGAATTCTGTGGCTATTATGCTGAGTTCTTGGGCTTAATTTTGATAGGTTAGGCTTGTTGCTATAATGAAGTGGAAAATATGCGAGATGTTCATAGGCCTTTTATGCATTTTATTAGTGGACCTAGTGAGGGATTCCTAAAAGCTGGAATACCTTgggcattttctttttattttaatgtcaaATTGCAAACGGTTAAGTTTCATaatgctttctttttattttaatgaatcaGAAGTTACACCTGCTTCTGTGGAGATACACACACCTTTATATTTATACACTATTATTTTAATGGTTAATTTTGTCCACAGACAGTACATGTGCATCAGAGATCTTGTGGTTGATGGTCACAAcagcttttttgtttgttgtaatTAATGATCAATAATGTCATCAACTGCCTGAGATCTGCTTTTGATTGAAAGTGTTTCACCAGGTTTTCTGTTGTCAATTGACATGGGATGGTAAAGCCCTGACTTTGAGCCGTTGGTTAGGTTGTGTCATGAAGATTTTTATCAACCCTCCCAGACCCACACTTACAGTGCTTGTTGtcagttgaattttttgtgtgtaatCTCATTGGTTATGAGTTATTATCGTCATTTGGGACAAAATAAGCTGGTCATTTTTCTCTTACATTCAAGAAATAGATAAGTTGAACTTCATAACTATTAGGGTGGTATGGTCAACATACTCGTATATTACTGTATTCGTGATCAATAACCTGGAGGTTATAGGCTTAATTCAAGCACAGCTTAAATAAAGGTTTACATGATATTTAAATGGTGaccttgaaatatttgcatgAAATTCCTGTAACTTGGTTACACTGTATTCATCTACTGTATGATAAAATTGCTCAGATTATACCCCTGTGCAACACTGCAATTCTGGCTGCTTGTTTGAAACTCCAACTTGCAACCattaataatttcaaaaacaggAGCCTGCAAAACATGAGGTGTCACTAAACTCTTAATGTTATATTAATTTGGTGGCAACTTTGTTGTCATGTTTGTATACTGCAAAGGTGTTGTCtactttgtttttgaattACTGTTAATTTGAAAGTACACTTGTCACCCTCGGACTTAACCTTAAACACGAcactgttaaccctttcaaaaactcattaataattcataagccCATTAACCTATCAAATGGTAAATAGTGACTTTATATCTTTCAATAAACCTCATCCTTATTAGTATGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WPW2	Pyridoxal 5'-phosphate synthase subunit SNZERR OS=Suberites domuncula OX=55567 GN=SNZERR PE=2 SV=2
A5UY94	Pyridoxal 5'-phosphate synthase subunit PdxS OS=Roseiflexus sp. (strain RS-1) OX=357808 GN=pdxS PE=3 SV=1
Q5SKD9	Pyridoxal 5'-phosphate synthase subunit PdxS OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=pdxS PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01680 all species →	SOR_SNZ	SOR/SNZ family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033755 all species →	Domain	PdxS/SNZ N-terminal domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR001852 all species →	Family	Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31829 all species →	PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008615 all species →	Biological Process	pyridoxine biosynthetic process	Interproscan
GO:0016843 all species →	Molecular Function	amine-lyase activity	Interproscan
GO:0042819 all species →	Biological Process	vitamin B6 biosynthetic process	Interproscan
GO:0042823 all species →	Biological Process	pyridoxal phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06215	pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunit	EC:4.3.3.6	Vitamin B6 metabolism	ko00750	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.