Gene detail

Detailed information of RMX41674.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3471:164251...169559
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00015858

ATGATAATCCCAAGTGTATATCTGAAAGGAGGGACTCTAGTGGATCCAAAGGATGGGGAAAAAATTGAAGATGTAACAGGCTGCCTCGATACAATTTCTTTGTGCCCAGAGTTTACCATCGTTTATCTTGATAAAGTCCAGGAGACAAAAGAATTTGGAAAGAAAGTTATGCATAGGACCTCTTGTTGCGTAGAAATTGAACTGAATTCTGAAGACGAGGTCTTAGATATACTGGATTCTGGTGCTAACAGTGTCATCCTTAACAAAGATCACCAACTGCATAGCCTGGGAGAATTTTTACCCAGAGAAAGGATTGTCTGCAAATTACCTGATCAAGAGTACTCTGTAGCTGAGTTGGCCGAAGAAATCAATGACCTAAAACACAGATCTAGCACTTTTCTTTTGTGTCCTAAAAAAGCTTCCCTTGCTGATGAATCATGCCTTGTCGAGTCTATAAAGGAACTAAAGACCCACCTGTGTGACGATGTGAAACTCATACTATCAATCGATGGGGTGATTTTGTCCTCAACCATCTCACAGCTTCACTTCCTCGGAGTTCAGGTTCAACTAAGTACAACTTGGTTGCTAAATGATCTCAGTCTTGGAGAGATTATCGCATCCTGTCTTAAAAGTGACCGATCTGATGGACTCTACCCAACTCTTGTGACAGATGAGCATAATATTGCATTAGGATTGTGTTATTCAAGTTCTGAGAGTATTCAAGAAGCAGTGAAAACCAAGAAAGGGGTGTATTTTTCAAGAAAAAGAGGATTATGGAGGAAAGGGGAAACATCTGGAAACCAACAGGATTTATTGCAAATTCATTTAGACTGTGATTGTGATACCCTGAAGTTTGTTGTACGTCAGCTTGGACAAGGATTCTGCCACCTTAACACATGGACTTGCTTTGGAGATAACAATGGTTTACCATTACTGATGAATACATTAAAGTCCCGCAAAGAGTCAGCTCCTCCAGGATCCTACACAAGTCGCTTGTACAATGACAGTAAACTGCTGCATGCCAAGATCCGTGAAGAGGCAGAGGAATTGTGTGAATCTGAAACAAAAGAGGAGATTACTTGGGAAGCAGCTGATGTTTTGTATTTCACACTAGTGAAATGTGCCAAGGCAGGAGTTTCTCTGAGTGATATTGAAAAAGTTCTGGATCAAAGGTCACTCAAGGTTAGACGACGTCCTGGTAATGCAAAACCTGGCAAATTGTCTCCCCGTAATGGCCATTCTATAACCAAGACAAAAGTACATGCTCCTGCCCAAGCTAACTCATCTACAGTCAGTGCACAAAACTCTGTTTTAAGAAGCTTTGATTTTGAGCTTCTTAATTATAAGGAATTACAAGATCTTTGTAAACGTCCTGCAGTGGTTGACAAAGAGAAACTAGAAGCTATTGTGGGACCGATTTTGACCAATGTGCGAACTTATGGAGACAAGGCTTTGCTAGAATTAACAGAAAGGTTTGATAAAGCTAAGCTGAGCAGCCCTGTGATCAACATGTCTGCCACAGATGAACCAGTTCTTGATAAGGAGGTCAAAGATGCAATTGATTTGGCTTACAACAACATCTACAAATTCCATAAGGCACAACTTGACCTGGAGCCTCTTGTGGTAGAAACATGCAAGGGTGTGGTGTGCTCTCGACATGTTCGACCCATTGAAAGAGTTGGCTTGTATGTTCCTGGTGGTAGTGCTGTTTTGCCATCAACTGCTCTTATGCTGGGTATTCCAGCCCAGGTAGCAGGGTGCAAAGAGGTTATTCTGGCCACCCCACCCAAGCAAGATGGTTCAGTTTCTCTTGAAATCCTTTACATTGCAAAGAAAGTTGGCATCTCCAAAATATTACTAGCAGAAAGTGTTCCTAAAGTGGACAAACTGTGTGGTCCAGGGAACTCATTTGTAACTATGGCCAAAATGTTGGTGCAAAATGATAGCTCAGCTTGTGTCAGTATTGATATGCCTGCAGGACCATCAGAAGTTATGGTCATTGCTGATGCAATTGCAGATCCCTCATTTGTGGCAGCTGATCTGTTGTCCCAGGCAGAGCATGGAACAGACAGTCAAGTGGTGTTGGTAGCTGTTAATTTGAGTGACAACCAGCTTGCCATGATTCAGAGTCAAGTGGATGCTCAAGCAAAGAAACTGCCTCGGGAAAAAATTGTCAGAGAGTCTCTCTCAAAGAGTTTTGTAATAAAAGTGTCAAATATGAGTCAGGCTCTGTGCTTCAGTAACAAATATGCTCCAGAACATCTCATCATTAACACAAAGAAACACATCACAGCCCAGCATGTAACAGAGGAGGGTTTGGCTAACATTGGACCAGCAGTGGCAACACTTGCCGCTGTGGAGAAACTTGATGCTCACCGTAATGCAATTTTGATCAGGCAGAAACAGATAAATGTCTGA

Transcript

rna-pdam_00015858

ATGATAATCCCAAGTGTATATCTGAAAGGAGGGACTCTAGTGGATCCAAAGGatggggaaaaaattgaagatgtAACAGGCTGCCTCGATACAATTTCTTTGTGCCCAGAGTTTACCATCGTTTATCTTGATAAAGTCCAGGAGACAAAAGAATTTGGAAAGAAAGTTATGCATAGGACCTCTTGTTGCGTAGAAATTGAACTGAATTCTGAAGACGAGGTCTTAGATATACTGGATTCTGGTGCTAACAGTGTCATCCTTAACAAAGATCACCAACTGCATAGCCTGGGAGAATTTTTACCCAGAGAAAGGATTGTCTGCAAATTACCTGATCAAGAGTACTCTGTAGCTGAGTTGGCCGAAGAAATCAATGACCTAAAACACAGATCTAgcacttttcttttgtgtcCTAAAAAAGCTTCCCTTGCTGATGAATCATGCCTTGTCGAGTCTATAAAGGAACTAAAGACCCACCTGTGTGACGATGTGAAACTCATACTATCAATCGATGGGGTGATTTTGTCCTCAACCATCTCACAGCTTCACTTCCTCGGAGTTCAGGTTCAACTAAGTACAACTTGGTTGCTAAATGATCTCAGTCTTGGAGAGATTATCGCATCCTGTCTTAAAAGTGACCGATCTGATGGACTCTACCCAACTCTTGTGACAGATGAGCATAATATTGCATTAGGATTGTGTTATTCAAGTTCTGAGAGTATTCAAGAAGcagtgaaaaccaagaaaggggtgtatttttcaagaaaaagaggatTATGGAGGAAAGGGGAAACATCTGGAAACCAACAGgATTTATTGCAAATTCATTTAGACTGTGATTGTGATACCCTGAAGTTTGTTGTACGTCAGCTTGGACAAGGATTCTGCCACCTTAACACATGGACTTGCTTTGGAGATAACAATGGTTTACCATTACTGATGAATACATTAAAGTCCCGCAAAGAGTCAGCTCCTCCAGGATCCTACACAAGTCGCTTGTACAATGACAGTAAACTGCTGCATGCCAAGATCCGTGAAGAGGCAGAGGAATTGTGTgaatctgaaacaaaagaggAGATTACTTGGGAAGCAGCTgatgttttgtatttcacaCTAGTGAAATGTGCCAAGGCAGGAGTTTCTCTGAGTGATATTGAAAAAGTTCTGGATCAAAGGTCACTCAAGGTTAGACGACGTCCTGGTAATGCAAAACCTGGCAAATTGTCTCCCCGTAATGGCCATTCTATAACCAAGACAAAAGTACATGCTCCTGCCCAAGCTAACTCATCTACAGTCAGTGCACAAAACTCTGttttaagaagctttgattttgAGCTTCTTAATTATAAGGAATTACAAGATCTTTGTAAACGTCCTGCAGTGGTTGACAAAGAGAAACTAGAAGCTATTGTGGGACCGATTTTGACCAATGTGCGAACTTATGGAGACAAGGCTTTGCTAGAATTAACAGAAAGGTTTGATAAAGCTAAGCTGAGCAGCCCTGTGATCAACATGTCTGCCACAGATGAACCAGTTCTTGATAAGGAGGTCAAAGATGCAATTGATTTGGCTTACAACAACATCTACAAATTCCATAAGGCACAACTTGACCTGGAGCCTCTTGTGGTAGAAACATGCAAGGGTGTGGTGTGCTCTCGACATGTTCGACCCATTGAAAGAGTTGGCTTGTATGTTCCTGGTGGTAGTGCTGTTTTGCCATCAACTGCTCTTATGCTGGGTATTCCAGCCCAGGTAGCAGGGTGCAAAGAGGTTATTCTGGCCACCCCACCCAAGCAAGATGGTTCAGTTTCTCTTGAAATCCTTTACATTGCAAAGAAAGTTGGCATCTCCAAAATATTACTAGCAGAAAGTGTTCCTAAAGTGGACAAACTGTGTGGTCCAGGGAACTCATTTGTAACTATGGCCAAAATGTTGGTGCAAAATGATAGCTCAGCTTGTGTCAGTATTGATATGCCTGCAGGACCATCAGAAGTTATGGTCATTGCTGATGCAATTGCAGATCCCTCATTTGTGGCAGCTGATCTGTTGTCCCAGGCAGAGCATGGAACAGACAGTCAAGTGGTGTTGGTAGCTGTTAATTTGAGTGACAACCAGCTTGCCATGATTCAGagTCAAGTGGATGCTCAAGCAAAGAAACTGCCTCgggaaaaaattgtcagagaGTCTCTCTCAAAGAGTTTTGTAATAAAAGTGTCAAATATGAGTCAGGCTCTGTGCTTCAGTAACAAATATGCTCCAGAACATCTCATCATTAACACAAAGAAACACATCACAGCCCAGCATGTAACAGAGGAGGGTTTGGCTAACATTGGACCAGCAGTGGCAACACTTGCCGCTGTGGAGAAACTTGATGCTCACCGTAATGCAATTTTGATCAGGCAGAAACAGATAAATGTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P45353	Histidine biosynthesis trifunctional protein OS=Komagataella pastoris OX=4922 GN=HIS4 PE=3 SV=1
P07685	Histidine biosynthesis trifunctional protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=his-3 PE=3 SV=3
Q12670	Histidine biosynthesis trifunctional protein OS=Saccharomyces bayanus OX=4931 GN=HIS4 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00815 all species →	Histidinol_dh	Histidinol dehydrogenase	Family	Interproscan
PF01502 all species →	PRA-CH	Phosphoribosyl-AMP cyclohydrolase	Family	Interproscan
PF01503 all species →	PRA-PH	Phosphoribosyl-ATP pyrophosphohydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012131 all species →	Family	Histidinol dehydrogenase	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR008179 all species →	Family	Phosphoribosyl-ATP pyrophosphohydrolase	Interproscan
IPR001692 all species →	Conserved_site	Histidinol dehydrogenase, conserved site	Interproscan
IPR038019 all species →	Homologous_superfamily	Phosphoribosyl-AMP cyclohydrolase domain superfamily	Interproscan
IPR002496 all species →	Domain	Phosphoribosyl-AMP cyclohydrolase domain	Interproscan
IPR021130 all species →	Family	Phosphoribosyl-ATP pyrophosphohydrolase-like	Interproscan
IPR016298 all species →	Family	Histidine biosynthesis trifunctional-protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21256 all species →	HISTIDINOL DEHYDROGENASE HDH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0000105 all species →	Biological Process	L-histidine biosynthetic process	Interproscan
GO:0004636 all species →	Molecular Function	phosphoribosyl-ATP diphosphatase activity	Interproscan
GO:0004635 all species →	Molecular Function	phosphoribosyl-AMP cyclohydrolase activity	Interproscan
GO:0004399 all species →	Molecular Function	histidinol dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX41674.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.