Gene detail

Detailed information of RMX42263.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3389:158020...167772
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00009850

GTTCCAATAGTCCAAGCATGAAGATGCAATGATCTATAGGTTGTTTACACGAAGTTTGCACATACTAAGAATGGCAGCTCCGAAAAAAGTATCTATAATAGGCTCCGGAAACTGggGTTCTGTGATATCTCGCATTGTGGGCGCCAATGTGAAAGACCATCCGGATTTATTCCAACAAACGGTGCAGATGTACGTTTATGAAGAGCTAATTGAAGGAAAGAAGCTCACAGAAATTATCAACACGGAACACGAGAATGTGAAGTACCTCAAAGGTTTTAAACTGCCGGACAACATTGTAGCAAACCCAGATGTAGTAGACGCAGCCAAGGATGCAGATATTCTTGTGTTTGTTGTACCTCACCAgtttGTAAAGGCAGTTTGCACCAAGATGAAAGAAGTGGTGAAACCAGGTGTAATTGCAATTTCCCTTATAAAGTTTGGCATCCCCTGTGAATTCATGAGAATTGATGCAATTGCTGACAAGACTCACATTATGACCTGGCAAGAATGCCGAAAGAACAGCATAGACAGAAATGAGGCTCTTAAACGACAGGCTAGCATCAGGGCAAGTGACCTTCAACCTCATTAATCTGATTTGAAATTCTCCCTTCCACCTGTCATACATTTCTCTGGTCTTGATCATGCAAGCACTGGAATTAATCTTGTGTCGACCATGATTAAAGAAGCTCTGGAAATTCCTCATGTCAGTGTCTTGATGGGAGCAAACCTTGCCAAGGAAGTAGCCAGAGAGATGTTTGGAGAGGCTACTATAGGTTGTCGTATGGAAGAACATGGTCCCATCCTTAAGGATTTGTTCCATAcagattatttcaaaatcaatgttGTGTCAGATGCAGACACGGTTGAACTCTGTGGCTCACTTAAGAATGCTGTGGCAGTTGGAGCTGGAGTTGTGGATGCCTTAGGttatggTGACAACTCCAAGGCAGCAGTCATTCGCATTGGACTCAAAGAAATGATTCAGTTTGCTCGAAGATTCTACGATGATGTCAGACTGGAGACTTTCTTCGAATCATGTGGAGTGGCTGATTTAATAACTACTTGTTATGGTGGAAGAAACAGGATAGCCGGAGAAGAGTTTGTGAAGGGAAAGACATTTGAAGAAGTTGAACAGTACATACTTGGAGGGCAGAAGCTTCAGGGGCCCCACACAGTTTATGAAGTGTATCATCTTCTCAAGGACAATGATTTGCTTTCTGAgtATCCTCTGTTTACTGCCATCTACAATGTGTGTTTTGAGAAGCATCCTCCTTCAGAGATGATAGAAGTCCTCAAAAGACATTTGTAGAACTGAGTCCTATGGTTGTAATCATGGTGTCAACATTGTcttatatttattcaaatttacaatgatttataatattttttttgtataatgAGTCCACATGGCAACATGACATAACTTTACCTGAAATATAAAGTTTAATACTCCAGACTATGAGCAGTCCTTCCTTTTCTGCAAAGTCTGTGGcgttagtaaaaaaaaaatagtaaaaaaaactgatgtaAGTGTGTTGCATGGAACTCTTTGGGCCTCACTTCCAGTGTTCCACACTGCTGTGTGCTAGCAtcaatctttttctttgccGATTATTTTGGACGTCTGACAGAATTTGTTAAAAGGAGCAACTGCTGGTAGTCTAATGTTACTCAGAAATTTacagttttgatgaaaatttatagCCCAATTCCAAGTTCAAAATCCTTCCATTTAAAAATTAGGCCAGGTGCCTGTGAAAATGAGTTTTATTCATGTGAGAATGCCTTTACACTCATCTTGAAACAGAGGCCTTAGACATCTAGGAAGTAGCCTCATATTCTTCTCAAAGGAACCTTCAGCAACTAAAATTAACACATGCTTTAGTTGATCCTCTGCCCTGGCGGCAACTCCATTGAACATTGAATTATTGAAGCAGTTAaactaaaacagaaatttacaAGCACAAAACTTCAGCTAGAGAAAAAAGAGTGCACTCAACGAATAACACTTGCATTTGTTGCTGGGTTGCTTTAGCTGCACTGAATGAGACTTCAACTCTATTATTAATTACTACTCATACCAGTAGAACTAACTGAGAAAACTACcgcaaacaataaattttagcTTTATTAATGTTGATAATAATTCTGATTATGGGATTTAGCAATGGACATTCCAGGTGGTGTCTCTTTTTGTCTACTGTTCTTAGGTTGATTTGGAATTTAGAACTAACTACTTATCCAAATAAGTTACTCTAGATTTTTGCAATAATGCATCCCACAGAagccatgaaaaattaaaacattttcaaacaaaacaatgttaaAAAGTGTTAATGAACTGGTGTTTGGATCTTACGGACAAATGACTTAATTGTTTAAGGCTTTTATATTTGTAGATTTTCTCTTAGGTAATGtttattgacattttcatcatcatcatcatcattgctcctgttttcaaactttttctaGAAGATATCAATGTGGACATGGTTGTCACAAGGAGAAGGGAAGAGtcatttaaaatcttttttctctatttttttggTCCAGTAACAACACTCATCTCTTAGTTAAAGTTGTCCAGGTAGAATTTGCCAAAATACCCAAGAAGTCAAGAAAATTGGGCATTCGAAAATGTCGTGTAAAATTAGCATAATGCCGTGGAGTCATTAGATAGATGTAattattgttgtaatttttttttttgttaatatatgggaattaaattatattttcttttc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57656	Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Takifugu rubripes OX=31033 GN=gpd1 PE=3 SV=1
P34517	Probable glycerol-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans OX=6239 GN=gpdh-2 PE=3 SV=2
Q5XIZ6	Glycerol-3-phosphate dehydrogenase 1-like protein OS=Danio rerio OX=7955 GN=gpd1l PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01210 all species →	NAD_Gly3P_dh_N	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	Family	Interproscan
PF07479 all species →	NAD_Gly3P_dh_C	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011128 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	Interproscan
IPR006109 all species →	Domain	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	Interproscan
IPR006168 all species →	Family	Glycerol-3-phosphate dehydrogenase, NAD-dependent	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11728 all species →	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046168 all species →	Biological Process	glycerol-3-phosphate catabolic process	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0047952 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	Interproscan
GO:0006072 all species →	Biological Process	glycerol-3-phosphate metabolic process	Interproscan
GO:0004367 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006116 all species →	Biological Process	NADH oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX42263.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.