Gene detail

Detailed information of RMX42274.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3389:309241...318471
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00009862

GCCGCAAATCCCGCCGCGACCTGTCTTGAGTCCATTTCCTGATCAGAGGGTATGGATAGGAGGTAGCGGCCCTTGAAGCATCACGATTGTGAATAGGCTCCGTCATGGGTCTTATTTTCTCCAGGTGGAGGAAAAAGGAATCGCTCGGAGAAGTGTTAGAATTACTGGAGAAGGATATCAAAGCATTGCAGTCCAGTCAGCAAAGAACGGAAAACCTCAGGAAGAAATTTATTGGTTCTCTGATCCTGTACTCAGTTGTGATGTACATTTTAGCTGCTCTTGTGTGCTACTTCTATGACTTTCCAAAGTCTTGGAAAGCTAAAATTGTGCGATCAATTCCACTCCTTAGAGTGcttcattacttttttgttcaaagaaTTAGTAAGAATGaaagaagGCTGGAAGAGTTAAAGGACAAGAAGAGACAAGTTCTTGAGGAAGTGATGGAAAAAGAGACTTACAAAGCAGCTAAAGATTTGCTGGCTAAATATGACCCCAATTCTGAAGTAGTCAAGgtggaaagaaaagagacACCTATTTCAACTCCTACACACAGTGTGCAGAGTCCAAGTGGCTCAATGGGAACAGAATTAAGACAGAGGAATGCCCTGGGTAAGGTTGAAAGTCCAGGGGCTCCATTACAGCGCACCATCTCTGAGCCCTCTCTAGCAGAGTCTCCAGGCCAGATGAACCAATCAGGGGATAGCAAACAGACAAATCAGAAGGCAATAGAGCCAAAGAAATCCAACAGCCTCATGAATATTCcttcaaactcatcagGTGCAGCATCTCCATTGCCCCCTGGTACGCCCCGCAGAATAGCCTCACCAGGTCCCATGCCGAGACCTGCTCAGCCAATCTTACCACGAGAGAGAACAGCTATGgataaattGGTGGAATATCTTGTTGGTGATGGACCAAATAACAGATATGCTCTGATATGCAGTCAATGCCACTCTCACAATGGAATGGCCTTGAAGGAGGAATTTGAATATATAGTGACACAAAAAGCAGATGAGCCCAGTTCTGTGAAGGAGGAAGAGTTATTGAATGGTGATGATGCTGCagtggagaaaatcaaagAAACTGCCAACAGCTCAGACATCAATTTGGAAGACAAAGACTGTGACCAAGGGCACTAACATGTTGTATGCAGTTGTTGCTGTGGATGATTACAGTTTTGTTCTGTTGGGtacaaagatattttaaattatcatttaaatgaGCAAGAGCAAGGTTGTTATAGGGACTAGAAAATACTGTGGTGTCATGTGATATGCACTGAATTTATTCACATTAAATTCCAAAGGCCTCTAGTTCAAGTAAATTCAGTTAAACCATGAGAAGCACAAGAAgattaaatttcttgtttagtCACAGATTCTTTATAGAtggtttatttattatgaGTATTAACGAGGAGTTGTTCCCTCTTATGATGGAGATATGTCAGATACTCTGTCAGATTAATTTATTGAGAGAATAAATGACacttttaacaataaaacttttgtGACTGTAGCATACTTGGTAATGTTCAGTGCAAGTAGTGAAATTAAGTGTACTGTGCTAAATTTCTTCCTAGAATGTCAATATGTAAATGTGGCTTGTTGTTTAACACTAATTTCTTGAAGCCAGAATAACCAGGAATGTTGAATGTTTGGCAGACAGCGCAAAAATTTGTATTCTAATCTTTGGAGTGTAAGGGTAAACACAGCTTCAAATGAACGTCTGGgtaactcctatgagtgaccaagacagaatttctccttacaatatcaatagaatatcaaccagataagtgatgagaataaagaaaaatatcaatttggtgataattagttgatccaatactcaattctctgaactaactttagaagaattgtatggttgacagtaaggagaattacaaattttgtctggaagttgaagggttaatttatGAGTTGAGCCCAAGAATGAGGTTGTATGCTTGGATCAATGTCAATATATGAACAACTGTGTTCTTATCCCTCCCCTGACctaacattaaccctaacttgttatcagttgactgcAGTTgtgttaggggaggggtgggtgtgCAGTTAATCAGATACAGACATTGATCTGATTGCTTCATTGATACCACTTAGTAGATCAAATTGAGAAGTGGACATTTTTTATGCATAAAACTATATTTATAgtttattttcagcaaaaagtGCAGCATAACAAATTGTAAATCTCAGATAAGTTGAAATTACAGTTGCATGAGGCGAGTGGAAgtaaagttaaattttgaaagctgaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TQ95	Endoplasmic reticulum junction formation protein lunapark OS=Mus musculus OX=10090 GN=Lnpk PE=1 SV=1
Q6PFM4	Endoplasmic reticulum junction formation protein lunapark-B OS=Danio rerio OX=7955 GN=lnpkb PE=2 SV=2
Q28HF6	Endoplasmic reticulum junction formation protein lunapark OS=Xenopus tropicalis OX=8364 GN=lnpk PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10058 all species →	zinc_ribbon_10	Predicted integral membrane zinc-ribbon metal-binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019273 all species →	Domain	Lunapark domain	Interproscan
IPR040115 all species →	Family	Lunapark family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22166 all species →	ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071782 all species →	Cellular Component	endoplasmic reticulum tubular network	Interproscan
GO:0071786 all species →	Biological Process	endoplasmic reticulum tubular network organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23292	LNPK; endoplasmic reticulum junction formation protein lunapark	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.