Gene detail

Detailed information of RMX42301.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3389:407298...418834
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00009873

ATGGGAGACAAGCACCGGAGAATATTTTATCGAGATGATTTTCCAGACTCTGTTAGAGAATCACGGAGCTATGCTTTAAGGAATAAAATCGTTTTTTCATTTCCTCAATTTATAAGTACCGCAGCCATGACTCACACGATCTACCTGGGGTTCCTGTGCATCTCTTTAGTGTTGGTGGTACTGTGCGAAACTTCTGCCAAAAAAAGCATCCGTGAAGAAACACAAAAGGAAAAAAAAGTACATTTGAAGGACATATTTAGTGGCAGGATGAAAAGACAGTTAGAAGAGCTTTGTCAACAGTCACCTGCAGGTTGTATCATGCAGTCTGAATTTTCCGAGGATAGTACGCAAAATGGAAAGAGAAAGAGAAAGAAGAGCAAGAAGGAAAAAAAACATGGAAGCAGAGGGAGAAAAAACAAAAGGAAGATGTCAACTTCGAGCGAAATAAACCAAGAGACGGATGAAACCTGTCCTTATGTGGATCCACCGACAGACGATGAAGATTATGAAGAGGATGACGGCAGCGACAAGCCATTTTTGAAGGAAAGATCTTCAGATGACTCTTCACATGCTAGTGCTATTATTAACCTTCTCACTGAGCTAGGGCACACAATGAAAATAAACAATGTTACTGCTCAGCTTCAGTTAGGAGAGTCGTTGTTAAGGTTTTACACTGACCAGTCATTAGAGAACCAAAGTTTTGAAGGCTACCAAGCATCATCACTGTCTTACAACATAACTTTGGTGGAAAGAAGTGGAGTGGCCAGAGCACTTGTTGAGAGTTTGGAGCAAGTTGAGGACCTGAATGCGAGACTTGAAATCATGAAAGTGCTGCAGTGTTATTCAACTTCAGCATTGAATTGTGATGATATGCTGTCAGTTGGTGCAGCTGGTTTGTTGTGCAGTGGAATCAATATCCCAGATCCATCTGATAGGGTTGTTTTCCGAACTGTTGAAATTCTCTGGAATTTGCTAGAATTTGGTTCTAAACAGGAGGTTGTGCGTCAGCTCAATTGCAAAGAGTGCATAAGTGCATTGAGAGATGCCTTTGTTAGGCAGATTAAGGATGGCTACAGTCTTGCTGATAAACAGCTGAGTCATCATGATTTAGTGAGGAATCTCAAGCTCTACCAGACTCATGAAGATTTTGAGTTCAAGAAGCTGTTAATGAGCACATTGGTGTTGCTGAGTGCTGATTCTGGAAGCTCTCAGATTTTTTGTGAGGGTCGCGTGATTTTGTCATTGTTCTCTTTTGTACGAGCAAATGACAACAGCTCAACTGTGGAGTGGTCCCCTGCACAGTTTGAGGAGCTGCAGTTACAGGCCTTAGATACCTTAAGCACTGTCGCTCCTTTGTGTTTGGACGACTACATGACTTGTCAGACTGACTATGGTGGCCATGGCAACAGTTTCCATGGCTCTGGTGGCCGTGGCAACAAACGAGCCCAGATGCGGTATTGTTTGCGGCTGATGAGGAGCATGGTGTCAGTAGGAGATGACGGCTTGAATCAAGATCTTGTAGACCAAGGAGCTATCAATCAGATTATTGGAATACTTCTCAATGCCAGCACCAGCCCTGATGATAATGATGCTATTGACATTGAGATGCAGTGTGATATGTTGTTCCTTGTGGCGTCTCTTTGTGAAGGAGATACTCACAGGAAGGAGCTATTTGGTGCCCAAGGAGTCCAAGTGTTGGTAGAATATCTGAAGAGAGATCCTAACAAGATTAACAGTCCGCTGGGGCATCATCAGCTTCTTTTATCCGCAGTAGACTCTGTGTGGTCTGCTGTGTTGGGATGTTACATAACTGAACAACTGTTTCTTGAAAATGATGGAGTTTTTCATCTCATGGATTTATTAGAGATATGTCCACTGACAATGCAGAATCTGGTGCTGGGATGTTTGGTGGATCTCTGTGAGAATTCTAAGGCTCTGGCGCATGTTCAGTCCTGGCGCGGTAAGAAGCAGATTACAGCCGGTAAACTATTGGTGGAATTGTGGAAGAAAGAGGAAGCTAACATGGGTGTGGCTAGAGATAAAATTGGCAAAGATAAACTTATTCAAGCTCAGCGAAACCAGGAACTTATTGAAGAGGAGGAGTATTATGAATCAATCAAAGAAAGTCACCGCCAAGAAGAAAAGGCCTACAAAGATTTTTGTGATTATGTCGACAGAACATCGGACTACGCGGTTCTCAAGGCTGCAAAAGAGAAGCAGTTGAGCACCATAGAAGCTTCAAGACTTCAGGGTAGAGTTTATTCGGGCGAGATTTCCCACGACACTTTACAAGAAGACCTTAACACAACTACTTTCTGCGGTAGACGAGTAGAAATCGAAAGTACCCCACTTGACATAACAAGAACGATTACAAGTGCGACAACAGCCGACGAGGAAAAGGAAACTCTTGTAGTAGCGGTAAGTGAAAGAAAGGACCAAGGAGATGTCCTATCCTAG

Transcript

rna-pdam_00009873

ATGGGAGACAAGCACCGGAGAATATTTTATCGAGATGATTTTCCAGACTCTGTTAGAGAATCACGGAGCTATGCTTTAAGGAATAAAAtcgttttttcatttcctcaatTTATAAGTACCGCAGCCATGACTCACACGATCTACCTGGGGTTCCTGTGCATCTCTTTAGTGTTGGTGGTACTGTGCGAAACTTCTGCCAAAAAAAGCATCCGTGAAGaaacacaaaaggaaaaaaaagtacatttgAAGGACATATTTAGTGGCAGGATGAAAAGACAGTTAGAAGAGCTTTGTCAACAGTCACCTGCAGGTTGTATCATGCAGTCTGAATTTTCCGAGGATAGTACGCAAAatggaaagagaaagagaaagaagagcaagaaggaaaaaaaacatggaagcagagggagaaaaaacaaaaggaagatGTCAACTTCGAGCGAAATAAACCAAGAGACGGATGAAACCTGTCCTTATGTGGATCCACCGACAGACGATGAAGATTATGAAGAGGATGACGGCAGCGACAAGCcatttttgaaggaaagatCTTCAGATGACTCTTCACATGCTAGTGCTATTATTAACCTTCTCACTGAGCTAGggcacacaatgaaaataaacaatgttaCTGCTCAGCTTCAGTTAGGAGAGTCGTTGTTAAGGTTTTACACTGACCAGTCATTAGAGAACCAAAGttttgaagGCTACCAAGCATCATCACTGTCTTACAACATAACTTTGGTGGAAAGAAGTGGAGTGGCCAGAGCACTTGTTGAGAGTTTGGAGCAAGTTGAGGACCTGAATGCGAGACTTGAAATCATGAAAGTGCTGCAGTGTTATTCAACttcagCATTGAATTGTGATGATATGCTGTCAGTTGGTGCAGCTGGTTTGTTGTGCAGTGGAATCAATATCCCAGATCCATCTGATAGGGTTGTTTTCCGAACTGTTGAAATTCTCTGGAATTTGCTAGAATTTGGTTCTAAACAGGAGgtTGTGCGTCAGCTCAATTGCAAAGAGTGCATAAGTGCATTGAGAGATGCCTTTGTTAGGCAGATTAAGGATGGCTACAGTCTTGCTGATAAACAGCTGAGTCATCATGATTTAGTGAGGAATCTCAAGCTCTACCAGACTCATGAAGATTTTGAGTTCAAGAAGCTGTTAATGAGCACATTGGTGTTGCTGAGTGCTGATTCTGGAAGCTCTCagATTTTTTGTGAGGGTCGCGTGATTTTGTCATTGTTCTCTTTTGTACGAGCAAATGACAACAGCTCAACTGTGGAGTGGTCCCCTGCACAGTTTGAGGAGCTGCAGTTACAGgCCTTAGATACCTTAAGCACTGTCGCTCCTTTGTGTTTGGACGACTACATGACTTGTCAGACTGACTATGGTGGCCATGGCAACAGTTTCCATGGCTCTGGTGGCCGTGGCAACAAACGAGCCCAGATGCGGTATTGTTTGCGGCTGATGAGGAGCATGGTGTCAGTAGGAGATGACGGCTTGAATCAAGATCTTGTAGACCAAGGAGCTATCAATCAGATTATTGGAATACTTCTCAATGCCAGCACCAGCCCTGATGATAATGATGCTATTGACATTGAGATGCAGTGTGATATGTTGTTCCTTGTGGCGTCTCTTTGTGAAGGAGATACTCACAGGAAgGAGCTATTTGGTGCCCAAGGAGTCCAAGTGTTGGTAGAATATCTGAAGAGAGATCCTAACAAGATTAACAGTCCGCTGGGGCATCATCAGCTTCTTTTATCCGCAGTAGACTCtgtgtgGTCTGCTGTGTTGGGATGTTACATAACTGAACAactgtttcttgaaaatgatgGAGTTTTTCATCTCATGGATTTATTAGAGATATGTCCACTGACAATGCAGAATCTGGTGCTGGGATGTTTGGTGGATCTCTGTGAGAATTCTAAGGCTCTGGCGCATGTTCAGTCCTGGCGCGGTAAGAAGCAGATTACAGCCGGTAAACTATTGGTGGAATTGTGGAAGAAAGAGGAAGCTAACATGGGTGTGGCTAGAGATAAAATTGGCAAAGATAAACTTATTCAAGCTCAGCGAAACCAGGAACTTATTGAAGAGGAGGAGTATTATGAATCAATCAAAGAAAGTCACCGCCAAGAAGAAAAGGCCTACAAAGATTTTTGTGATTATGTCGACAGAACATCGGACTACGCGGTTCTCAAGGCTGCAAAAGAGAAGCAGTTGAGCACCATAGAAGCTTCAAGACTTCAGGGTAGAGTTTATTCGGGcGAGATTTCCCACGACACTTTACAAGAAGACCTTAACACAACTacTTTCTGCGGTAGACGAGTAGAAATCGAAAGTACCCCACTTGACATAACAAGAACGATTACAAGTGCGACAACAGCCGACGAGGAAAAGGAAACTCTTGTAGTAGCGGTAAGTGAAAGAAAGGACCAAGGAGATGTCCTATCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5D8W1	Cilia- and flagella-associated protein 69 OS=Homo sapiens OX=9606 GN=CFAP69 PE=1 SV=3
B0CM26	Cilia- and flagella-associated protein 69 OS=Papio anubis OX=9555 GN=CFAP69 PE=3 SV=1
B0VXE6	Cilia- and flagella-associated protein 69 OS=Callithrix jacchus OX=9483 GN=CFAP69 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21049 all species →	CFA69_ARM_rpt	Cilia- and flagella-associated protein 69, ARM repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048732 all species →	Family	Cilia- and flagella-associated protein 69	Interproscan
IPR048733 all species →	Domain	Cilia- and flagella-associated protein 69, ARM repeats domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14716 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0097225 all species →	Cellular Component	sperm midpiece	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1902093 all species →	Biological Process	positive regulation of flagellated sperm motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24227	CFAP69; cilia- and flagella-associated protein 69	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.