Gene detail

Detailed information of RMX42394.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3381:266012...278699
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00004886

Transcript

rna-pdam_00004886

AATGTAAGCAACGAAGCGTCTGCAAATGATCACGTGACTTACCGAGCGTGGTTTAAGGTCTGCATATTGTTTGAATCCACCATCTTGCTCTGTGGAGTTATGATGGGTTTTAGGAGCTTAGCGGCTGGTTTGTGGTTATTCCACTGCTTTTTCGTCGTTTGTGCAATTGACCGCGAATTCCCTGGTAATGCTTACCTCAAGTACGTCGCTAACGAGAAGCCAATCAACTCTGAGGAAGACATCTTGACTCTTCAGTTTAAGACAGTTGAACCCTCTGGACTGTTGTTCCATACCCAAATGGGTGGTGGTAGTAGTGGAGACTATGTCACAGTTGAGCTCTATGGTGGAAGTTTAAGGTACAGTGTACGGCTTGGTGGAAGTAATGATGGCAAAGTATTGTTACTGGGCCAAGATCTTAATGATGGAAAACCCCATACTGTAGAAGTGGTACACAAGGAAACTGTCATAAATGTTACGCTAGATGCTAAAACATCACAAGAGAAGAGGGGTAAAATTACCACCAATTATAAAAAGCTTGAGGTAGATGTTGCCATCTATGTTGGAGGAGCACCTAATTTCAAAAGCCTCCAAGGGGTCAAACCAAAACCACAGTTTTACTTTGTGGGTTGTCTTACTGATGTGAAGTTTCGGATCGAGACAGTTACACCTCCACGTGAAATACAATTCCTCAAGGAGGGTGTTGTTGAAAGCGTGAAAGTTGATATGAAAAAGGGGTGCTCAACAGTAGCCTTTCAGCCAtacactttttcaaaatcagactctgcatttacttttaaaattgacaAGAAGGCTGATGTCACTGGAAGCTTTAAGTTCCGAACATATCAGAAGTTTGGAACTCTCCTTAAGCAAGGTGATGAAAAGAATGGTTTCACCATAAAGTTTGGAGGAAGTGGTATTACTTTGAGTTTGTTTGTCAAGAGCACAGCAACTGAAGTGACCCTTTCCACTAATGTTAATGAGGCAAAGGTTGACACTGGGAACTGGATTACTATTGAATTTAATGTCTCTGCCACCAACATCAGGTTGAAAGGTAACAATAAATTACCAGTCACAAAAAATCCACCTGAAGCTGTGGGGGATAATTTCTTCCACTCTGATGTAACAGCTGGTGGTTTCATTGGCTGTATGCGAGACCTTAAAATCAATAATAACGGCTTTAAGCCAGTCAAGGGAGTTGACACTGTCAAAAATGTGGAATTTGACAAATGTAACATCACTGATCTTTGTGTCTTTGTCCCCTGCTTGAACAATGCAAAATGCACAACTGATGGAAAGGAGCTGACTTGTAATTGCCCAGGCACTGGCTACAAAGGAGAAGTGTGCCAGTGGGCTGAGTATGCGGAAAATTGTGAGGCTCATAAAAGGCGACTCATTGATCTAGGTGGAACTCCCACTGATGGTTCATATACAGTTGATGTGGATGGGCCAGGTCCATTGGTGTCTGTAAGGCTGTCCTGTAACATGACAGCCAATCCAGCAGTCACAGTAATCAAAACTGACAAAGCAGGGGGGAAGATTATCACCACTGGTGATAAAGGCACTCCAACCCAGCCTTATACTGAAGACATAAAGTATGTTCCtaatttaaaaacagcaaaagccTTGGCTAGGAATAGTGAAGTATGCAAGCAGTACATTGACTTTGGATGCAAAGGTGCTAGACTCCTCAATGCTGGTGGGAAAGACAAAACAGGCTATTGGGTTGCTAGTAATGGACTTTACAAGTATTACTGGGGAGGTGCCCCACCCAGTATGGAATCCTGTGCTTGTGGAGTGAATAAGACTTGTTCAGACAAAAGTAAGATGTGCAACTGTGATGCAAGAGACAATGTTTGGAGGAGAGATCATGGGTGGTTAACTTCTACATCTGACCTGCCTGTAACACAAGTGGTTTTTTCTGATGTGAAGGAAGGGGAggcaaatttttctgttgggCATCTATACTGCACAGgaaaaacCCAAAATACAGCAACAATCATTCATGCAGATGGTGTGATAAAGCTTGATAAGTGGTCCCCACCTTCTCATGGGATCATCTCTCTGTTGTTTAAAACACCTTATGCCAAGGGAACAATACTGTACAATGGCGATAACACCAAAGATTATTTCCAGTTGGAAATTGTCAATGAAACCAGCATCAGGCTGAACTACAATATCGGCAATGGAGTTGAGAAAATAGAATTGTCTCTGGGAAATGACAAGAAACTAAATGATCTTGAGTGGCACACAGTAACTGTTTATCACAACATGTTACAATTTGGACTGAAGttggatgaagaagaaaaagagaaaaagaaccCTGTGCTCTTAGAGAAAGACTTAAACATGGATGATAAGCTCAATATTGGAACAAACCCTAGAGATGTTACAGCAGGATTTGTGGGCTGCATTCGTAGACTGactATTAATGGTGAATTGATCGACTTGGAGGGATTAGCAAACTCCAAAGAATTCAGCTACGTGAAAGGTGGTTGTGGTGCAGCATGTGACAAAAATCATTGCAAACTTGGCAGTAAATGTGTGGATAACTATAATGTATATAAATGTGACTGCAGTTTAACTCCTTTCTATGGATACTTCTGTTCTCTGGATTATGGCGCATCGTTTGCTGAACAAGAAAGCGAGATAACATACACCTACCCTACCCCTGAGAATGTCCCCGGCGTAGACATAGTTCTTGGTTTCAAAGCGAATTCCAAAGACAAATGCGGAGGGGACTTACTTAAGATCACCAGTAAGGGCACTCAagatttctttctgttttcaatCAACTCGAAAAAGAATCTCgtgttttccttcaaatccACGTTGGGTGATGGTGAATATGAGATAAGCCCCTCCAAAAACGATGACTTCTGTGATGGAAATAGACACACGTTTTCATTTGTTCGCCGAAACGAGAAACTTAATTTCACCGTTGATGGAAAGGACacacaagaggaaaaaaatgaccGGTTAAAAAACCCTTTCTCCCGTATGGAGAAGATTATCGTTGGAAAGCAAGGTGATACTGGTTTTAAGGGCTGCCTCACGGGTGTCAAAGTGACACCGTTTAGTTTTGACAAGTCGCATCCAACAATAAGTCCCATCAAGGATTATGTTTACGATGGGAAAACCAAGAATTACAAGGCCTCTGGTATCAGTGGAGATAGTAAAGAGAAGTGTGGCGAGGAGCCGGAGGTGCCTGAAAACCCACCCACCCCGCGAGATCCGGGCAGTTCCGGTGGCTCTGTCCAGTCAACAAATCCTTATGACCCGACTTCTGGAAGACGTACTGATGATGACAACAAGACAGCCATCATAGTGATCGTAGTGCTCATCTTGGTGCTGCTGTTGGTGGTTTTATTGATTGTTATATACTGGTACTGGGCAAGACATAAGGGGGAGTATCACACGCACGAAGACGACGAAGAGCTCAAAAGCACGGATCCGTACATTGACATGACCACCACCCGGAAACCCATGGAGGAGGACGtggagaagaagaaagagtGGTTCATCTAAAGGTGATCTACATTGTTTAGACGAGTTTCTATTTCAGTCTACAGCAATCATTCATGTCTTTAGTCGGCCGTGGAGCGCTGAAGAATCGTGCCAATCAGTGCTGTGCATGACTGATCTTTTAGCTAAGTAAACCATTTCTAATTTCCATGTAAATCACGCTAGATTTCATCAGTTCATAGATGATCTTCTCCCTTAACGTGAGATAAACTCGCACGAGGGGTTTTGTATTTGGTACTCCGTGAACACCACTCGCATACTTTGCGTGTGGCCTAGAATTAATGGAAACTGAACTACTTAAAtcgaagattttttttacagcatgAAGTGaaagttgttgtttgttttcgagGCGAGTTGATGAGCATAATCTGTTTTATTGGCAGTATATTTTATTGAATCATAAAACTTGatgtattaaatttttaggTGTTATGTGCCATATGCAATTGTCTAGCATAGAGAAAGCTAATGTAACTTCCAGCCTTTACCTTTCTGGGTGACATTATTCCATCGAGACACCATAATGTAAAAGAGTTTGTACCCAAGGCATTCGCGGTTTTGGAGTAGTTTGTCCAATTTCCGGCTCAGCGCTCAGGCAGAAAACCACTTTGCATTGCATCATTATAAATTTACGATTTTTTTCGGGagacttaaaattttcaaaatggactCGCGCTTGAGCAAATTGTCGCTCCAAAAGAGTAGTGTAAGAAATGTGTGATTGATCGAGCTTTTATCGGTTTCATTTAATCGAAGTAtgtttctgttgattttgcttgagttttttttagcctttaCTTTTGGAGTAATAAAACCAGGCTTCTTTACTTGgcatcaaaattaaatcaaacttttcagaATGAGGCGTTTCAACGCTTAATATGGAATTCAAGGTTTTgcgcgtttttttttcaaagtttgacGTATGCAAGTATTTATCAGGTATCgaggtaaaaattttcttaagttgTCTTCGTACAATATCATATGgaattaaatacaaattttaaaactcttcaCCTCGGTGAATAgatacttttctttgtaaacttGCCAGTATAAGGAAATTTAGGGTTCCAATCTATGTAGATTGAATGTATATGTAAAGACTCTTCGAATTTTCGAATCAGCAAGTACTAAATGTAGTTTAATAGAAGCTCAAGTAGATCTGTAATTTTAGGGAATTGTTGTGCTAAGGCCAAAGCAAGGGCTCCGTGTTTGCGCTTTACCAGTTGGTCGAATTCAGCACGAACTGGAGTTGCCCTTAGATGATTTTCGAAAAACTATCGCTGATGATCAACCGTATTTTTTCGAACATCGTCTGTTGTTAACTCTGTCACAAATTTGAGGACAATTTCCTAGAGGGACTGTTGCAGAGATCTCGTCGAAGGTTGTTTTTGCAGAGGGAAAAGATTAACTGCTCTATGTgggagaaatattttcataatttgtaCCTTTTTATCGTTAATTACCAACCTAAGTTTATGGGGTACGAAAGAGACCCTTGGGGGACCAATAGAGTGCTTAAATCCTGTGCGATCTCAGTTTGAAGTAATTAGCGCTGTCCTCTGACTTGGTTTCTTGTGGTGGGTTCACGGACAGACTTGTTTTGGTCTTAAAGTggaagtcttttttttttttttacctctaaTCAGCTGCAAATCGcaaataaagcttttaaacaaaaata

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8UU78	EGF and laminin G domain-containing protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q8WYK1	Contactin-associated protein-like 5 OS=Homo sapiens OX=9606 GN=CNTNAP5 PE=1 SV=1
Q0V8T0	Contactin-associated protein-like 5 OS=Canis lupus familiaris OX=9615 GN=CNTNAP5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000572 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR050372 all species →	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR003585 all species →	Domain	Neurexin/syndecan/glycophorin C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036 all species →	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for RMX42394.1 in Pocillopora damicornis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07380	CNTNAP2; contactin associated protein-like 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.