Gene detail

Detailed information of RMX42420.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3381:309762...312352
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004890

TTTTAATAACACTCATTAATTATAACTTTGgaccaaaagaaaactttttttgttgtgttttgcaGCTTTCATTCGCACGCGTCATTTCAGAGCATGCATTTTTTGGTTTCCGATTGTGGGTTAGTGGGGATCTTTTATCATCCATACACACGACTCTTGTTAACAACCAGCTATGACAACTGGAACCTCTCTAAGAAACACAACGATTAGTAACAGATATTTTAAGCCTTTCTGTCCTgtacaaaaatatgtttatttccATATAACTGTCTTTTTTAGGGGGGTTGTAAGATTGGGAAGCTGCATAAATAATGCATTGAAGATGTTCCTCTCTCTCATTGAGTAGCACCATGAATTGCTAAAAATGCAGATGATATGCCatgttttttgaaattatgatgtgctaaaaatttacctttcttGTCAGACCTTGTGTGCTCAGCGAGGCCACCCGTCCGAAATTTTTGCGAAACGAGAATCAACATTTGTTGCGATATGAATGAGATAAGAAATTTGttataataaatttcattaaacTCGAATATtccgtttttgttttccacgCCTTTATAATTTATCTACGAAGAGATTATATGAAggcttttaattaaatttatcaccCATTTGTGTCAACTCTTTCGGTCTGTTGCACGCGCAGCATCGACGGCGCCAGCAGTTTACCAAGTCAGCATAGCGATGACGTCACATATTTGTTAAGGAGCCAATCATGTAATTAATCTGGCTATCTAATTACAGCACTAAATTATGACCACAGCGAGAGCGAATATTGCTCTCGCCAGACTGGTGCCTTAGTCATTCCTATCTTGAGTTACTCGTTTGAGCACAACGGCGCGAGCGTACTATGGACTGCTTTTACCAAGCAAATCAGAGAGTTCGACCACCTCCTTACTTCAACACTTCACCGGTTATGTATGGATATGGTGTTCCTTCTTACTATTCCCCGCCGTTTTTCCCGCTAAATCGTAACTCTCAGGTCCACAGGCCGCCGGTAATATCTGCAAGCCCTCCTCTAAGCATTCCAAACCCAATGACAAACTCAGAAAGCAGTACCAGTCCTGTTTCGGTCGGCTCTCAAACTCCTCCAGAATCACCCAGCGAAACTTCTACAGACACGCACGAATCCACTGAACATAACGATGATGTTTGCCAATCAGCCAAAGATGCCAGCGAATCAGAAGACAAAACAGACGGTGAAGACGAGAGAGATGTACCATGGCATTATAAACAACCTTTCAAGCATCGCCGACGAGTGGCCTACAAGAGAAACCAAATTCTGGAATtagaaaaagaatttcactTCACGAGGTATCTTACGAAAGAGAGACGTTCAGAAATGGCCACGATGTTGCAGCTCTCTGAAcgacaaatcaaaatttggtTCCAAAATCGGCgtatgaaatggaaaaaggacAACAAACCCGTGATTCCTACAAGTAGAGGAATGCGGCGAGGATGTACAAGATAGGCGAGATACACCCGTTCAGAGATAATCAATTATAATTTGTTGTAATCCTCTTTTTAGCAGACTTGAAGGtgtataaaaattttctcttcctttgcGTCGGACGAATGGAGCGTTAGACAGCCATCGAAGTGTTACAAATTACGGCGAAAGGTTTATTCCGCTacatttgcaattttaactctttctttGCCTGCGCATAACATAACCTCGACTTTCGTCACAAGTTCTTTACGATCAAACAAGCACTGAAAGATTGTGAAGttgtaaataattgtaaaacatgaaaactcGTTCAGGAATTGAGTCAGACAGCAACGGGTTACAAATGAGGTGTTAAGCCGATTCGTCTAAACAGAGACACGAAGGCACTTCCACTGCGTCACTTTGAACGTTTTGTTTCTCGCCAACGAACTTCTCCACTTTACGAATCTTCAAAGAATATTCAGCCAAGTTTACGCTTCTTACTtacttgtttttatctttactCAATATCAATCTCGTTCGTCGTTTTATCGAATGCCGCTGTACGAGGCGGCATTTTagtcaaagaaatttgtgttAAATTTCTTATGCACTTCTCTTTAGTGGGATTAAAATCTCCGGTGGTTAAAAACGCTGTTCAAACGCAAAACTCCATTTATCGAGATTTCTTTCACTTGTAAGTATATATTTAAAAGGTTTTGTGAAAAAGCGTTTTCATTGTCACAATAAATTTATAGTTACCAAAGTCTGGACTCAGTAGTATATTTTACTTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P81192	Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=187800 GN=HOXA4 PE=3 SV=1
P14838	Homeobox protein Hox-B5 (Fragment) OS=Gallus gallus OX=9031 GN=HOXB5 PE=3 SV=1
O57374	Homeobox protein Hox-D4a OS=Danio rerio OX=7955 GN=hoxd4a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR050296 all species →	Family	Antennapedia-type homeobox	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45659 all species →	HOMEOBOX PROTEIN HOX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009952 all species →	Biological Process	anterior/posterior pattern specification	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX42420.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.