Gene detail

Detailed information of RMX42768.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3305:36217...46094
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00023194

ATGTTGTGGATTGATCACGGAAGAAAATATTTTCCCGCCGGTGGTTCAATTCTGCTGTTATCTTTTGTCTCTTTGTGGTATTTAACAACGGCTTCATCTCAAGGCTATTGCGACAAAGATGGATGTGATGAGATCGGGCAAAAAGGCCACTTGAAACCTTTTGGTGAGCACAGACAAGCAGAAGGTGAAGTTTCAAGTCTGCAGTATGCGCCTGGTGGTGCTGACTTCTATCACAACTACATTCACAAAAGGAGGCCAGTGGTCATCAGAAATGGAGCTAACCACTGGCCTGCAGTCCAGCTATGGCAAAATGAATCTTACTTGACCTCAAATTATGGATCTGAAATTTTCACTGTAGAATATCGCAAGAAATTCAAAAATGAATTTCCGGTCCGAAAACCACTGGCTTTTAGAGAATTCTTGAATATTTATAAACAGGAAAATGTGTACCTGGATTCTGCATTTCCACAGAACAGTGCCATGTTGAAAGACATTTTTCTTCCATCAATTTTAAACTGCCATGAGATATGGTCAACCATAGACAACCTGAATTTATTATTTAATGGTGGGGAAGCAAATTCTGCTTTTCATCATGATGGATTAGAAAACATTATTACAGTTGTATCAGGTTCAAAGAAGGTATATCTGGTCAACAGCACATATGCAAAGGAACTTCATGCTGATCAGTTTACCATTGCTCCAGGAGTCCTTTCCATTGATCCAGAAAAGTTAGATTTGGAGATGTATCCCAAACTAGCAGATGTACCTTACTATGAAGTAACTTTGAATAGAGGTGACATGTTGTATATCCCTCAATACTGGTGGCACATAGTGAGATCATATGACTCCCCTAACATTGGCATCAATGTCTGGTTTGCAATGTTCAACTTCGAAGAGCAGTTTAGAAAAGAAGGGATTTCTGAAGACACTGATGTTACAAAGGTAACAGAGCTGTTTGATAAGCTAGTTGGTGATGAGCCTGACAGGATTCAGTGCCCAGAAGAGAAACTTGCCTTGAATGACATTCTCAAAATCAACACTAGTGACCCAAGTAGTGGACCCCTAAGGATTCCAAAACAGAACGAGAGACCACCAGATGTTGTCCTTGCAAGTGGATATACAATGCCAGTCATGGGGTTTGGTACAGCAACACTGATGGAAAACACGACAGAAGCCGTAAAGACAGCTCTTGAAGTTGGTTACAGGTTGATTGACACTGCACAAGGCTATCCTGACTCAGAGCCACAAGTTGCAAAAGCAATTTCAGAGAGTGGAATCCCTCGAGCAGAAATCTTCATTATGACCAAACTACACCCCAGATTTCTTGGCTATGAGACAACATTAGAAGCCATTGAGATGTCTCTGAAATCTCTGAAAACGGACTACATCGATTTGTTTCTTATACATTCTCAGGCCTGCGATGACTTTCTCCTCATCTGCGGAGAAGGCAAGTTTTTTCATGATTATAATTATTCCCATATTGTACTATTTAGAGAACCTAAAGGCACATGGCAAGAGAGCTGGAAAGCCATGGAGGAAATGCAGAAGAAGGGAAAGATACGCAGCTTAGGTGTCAGCAATTTTTACATACAAGACCTGGAAGAACTAGTAAAACTTGCTACAGTACCAGTATCAACAGTCCAGAACTGGTTTGACCCGTTTCATCAGGACAGGCAAGTTCGAAAGTTTTGTCAAGAGCATAACATCCGGTACATTGGGTATTCAACTCTCGGCACCCAATGGGTTTACTTCCACGGTTTGCAGAAAAACCCTGTCCTTCATTCATCGCTGATTTTAGAGGTTGCCAGCCATTATGAGTTTGTTGCATCTCAAGTCGTTCTTCGCTGGGCCATTCACATGAACGTCACAGTCATTCCGCGGTCAAAAAACCCTCGCAACATTTACTTGAATTTCCGGGCCTTGGACTTCTCCTTGAACGAAAATGAAATCGTGTATTTCACCAACATCACTGATTATGAGTACCATCCTCTGGAACAGAAGCTAGACAAAGGATTAGGTTGCTCAGATAAGCATTCAAACTGTGAACAGTGGGCAACTTCAGGGGAATGCAGAACCAATCCGGACTGGATGCTGGTTAACTGTCAAGAAAGCTGCGGGCTTTGTTATGACGAGGACCTCGGTGATGCCTCAGCGATACCACCGATGGTGTTTATTGGTTCTGAAGACCACTTCATGTATGCACTCGGCGCAGCTAGCGGAACTGTCATCTGGAAATTCCGAACTCTTGGCAAGATCATGTCGTCTGCATCGCTCAGCCAGGACGAGGAGATCGTTTACTTCGGCTCCGTGGATGGTAAGGTGTACGCACTTGGTGCAGCCAATGGTTCAGTCGTTTGGACTCTAGTAACACGAGGTGCTGTTGTGGCCAGCCCAACTGTAAGTGTGAATGGAACTGTCTTCATCGGTTCACAGGATAAGGTTGTTTATGCTTTAGATGGTAGAAATGGATCTGTTGTTTGGAAGACAGATCTTGGCTGCCCAATTTGGGGTGCTGTCGCTCTGGACAACCAAAGAGGACTGCTATTCGTTGGCTGTACCACGGATAAGTCGAACGCAACGGATTCTCAAGACACACCTCATATTTTCGCCCTCGATGCCAACTTGGGAAAAATCGTGTGGACTTTTGACGGTGCTGGAAGCGTTTATGGCTCTCCAACACTTCTACCTGGTGGCCAAACCGTATTCTTTGCTTCCCTAGACCATAATATCTACGCTTTAGACCGCGAAACTGGTAAACTGTATTGGTCGTATGACACGGGGTCCGAAATAGAGTCCTCTCCAGTGGTCAGTAGGTTGGACGGTACCCTATACGTTGGCTTGATTAAGGGTCAACTGATTGCTGTTAACTCCGTAAGCGGTCCTTTGGCGGGAAAATTGAAGTGGACAGTGAATACTGGCGGGGAGGTTGTGTCATCGCCTGTCATCACTGAGGACGGAAGGGTTTTTGTAGGATCTGGCGATGGGCGCATCTTGGCACTCAACCAAACTGACGGTTCACATATATGGTCTCCAACAACAGGTGACTACATCGTGGCGTCGGTGGCTGTTTCACGCGATAACGCCGTATACGCCGCTAGCTCGGATAAATTTGTTTACGCTCTACACGGTGATGATGGCTCTGTCATTTGGAAGTTTGAAACTGGCGCTGCTGTTGTTGCGACTCCAGCTCTTTTTCCAGAACAAGTTATGCCGATTGGATAA

Transcript

rna-pdam_00023194

ATTAAAGCGTATTATGGAAATCTTCCCTCGATTGGTCTTATCAAAATGAGACGTGAACAGATGGTCAGTCGAAATCAGCTGACTATTTATGACTTGCGATACTTCGAAGCGTCGTTAAGATAGTGTACACAGTATTTCAGCCGATAAAAGGGGAAAAACTTGCAGGAAATCTCTCCACTTTCGCTTGTCTTCTGCGACATGTTGTGGATTGATCAcggaagaaaatattttcccgcCGGTGGTTCAATTCTGCTGTTATCTTTTGTCTCTTTGTGGTATTTAACAACGGCTTCATCTCAAGGCTATTGCGACAAAGATGGATGTGATGAGATCGGGCAAAAAGgcCACTTGAAACCTTTTGGTGAGCACAGACAAGCAGAAGGTGAAGTTTCAAGTCTGCAGTATGCGCCTGGTGGTGCTGACTTCTATCACAACTACATTCACAAAAGGAGGCCAGTGGTCATCAGAAATGGAGCTAACCACTGGCCTGCAGTCCAGCTATGGCAAAATGAATCTTACTTGACCTCAAATTATGGATCTGAAATTTTCACTGTAGAATATCGCAAGAaattcaaaaatgaatttccgGTCCGAAAACCACTGGCTTTTAGAGAATTCTTGAATATTTATAAACAGGAAAATGTGTACCTGGATTCTGCATTTCCACAGAACAGTGCCATGttgaaagacatttttcttccatcaaTTTTAAACTGCCATGAGATATGGTCAACCATAGACAACctgaatttattatttaatggTGGGGAAGCAAATTCTGCTTTTCATCATGATGGATTAGAAAACATTATTACAGTTGTATCAGGTTCAAAGAAGGTATATCTGGTCAACAGCACATATGCAAAGGAACTTCATGCTGATCAGTTTACCATTGCTCCAGGAGTCCTTTCCATTGATCCAGAAAAGTTAGATTTGGAGATGTATCCCAAACTAGCAGATGTACCTTACTATGAAGTAACTTTGAATAGAGGTGACATGTTGTATATCCCTCAATACTGGTGGCACATAGTGAGATCATATGACTCCCCTAACATTGGCATCAATGTCTGGTTTGCAATGTTCAACTTCGAAGAGCAGTTTAGAAAAGAAGGGATTTCTGAAGACACTGATGTTACAAAGGTAACAGAGCTGTTTGATAAGCTAGTTGGTGATGAGCCTGACAGGATTCAGTGCCCAGAAGAGAAACTTGCCTTGAATGACATTCTCAAAATCAACACTAGTGACCCAAGTAGTGGACCCCTAAGGATTCCAAAACAGAACGAGAGACCACCAGATGTTGTCCTTGCAAGTGGATATACAATGCCAGTCATGGGGTTTGGTACAGCAACACTGATGGAAAACACGACAGAAGCCGTAAAGACAGCTCTTGAAGTTGGTtacagGTTGATTGACACTGCACAAGGCTATCCTGACTCAGAGCCACAAGTTGCAAAAGCAATTTCAGAGAGTGGAATCCCTCGAGCAGAAATCTTCATTATGACCAAACTACACCCCAGATTTCTTGGCTATGAGACAACATTAGAAGCCATTGAGATGTCTCTGAAATCTCTGAAAACGGACTACATCGATTTGTTTCTTATACATTCTCAGGCCTGCGATGACTTTCTCCTCATCTGCGGAGAAGGCAAgttttttcatgattataATTATTCCCATATTGTACTATTTAGAGAACCTAAAGGCACATGGCAAGAGAGCTGGAAAGCCATGGAGGAAATGCAGAAGAAGGGAAAGATACGCAGCTTAGGTGTCAGCAATTTTTACATACAAGACCTGGAAGAACTAGTAAAACTTGCTACAGTACCAGTATCAACAGTCCAGAACTGGTTTGACCCGTTTCATCAGGACAGGCAAGTTCGAAAGTTTTGTCAAGAGCATAACATCCGGTACATTGGGTATTCAACTCTCGGCACCCAATGGGTTTACTTCCACGGTTTGCAGAAAAACCCTGTCCTTCATTCATCGCTGATTTTAGAGGTTGCCAGCCATTATGAGTTTGTTGCATCTCAAGTCGTTCTTCGCTGGGCCATTCACATGAACGTCACAGTCATTCCGCGGTCAAAAAACCCTCGCAACATTTACTTGAATTTCCGGGCCTTGGACTTCTCCTTGAACGAAAATGAAATCGTGTATTTCACCAACATCACTGATTATGAGTACCATCCTCTGGAACAGAAGCTAGACAAAGGATTAGGTTGCTCAGATAAGCATTCAAACTGTGAACAGTGGGCAACTTCAGGGGAATGCAGAACCAATCCGGACTGGATGCTGGTTAACTGTCAAGAAAGCTGCGGGCTTTGTTATGACGAGGACCTCGGTGATGCCTCAGCGATACCACCGATGGTGTTTATTGGTTCTGAAGACCACTTCATGTATGCACTCGGCGCAGCTAGCGGAACTGTCATCTGGAAATTCCGAACTCTTGGCAAGATCATGTCGTCTGCATCGCTCAGCCAGGACGAGGAGATCGTTTACTTCGGCTCCGTGGATGGTAAGGTGTACGCACTTGGTGCAGCCAATGGTTCAGTCGTTTGGACTCTAGTAACACGAGGTGCTGTTGTGGCCAGCCCAACTGTAAGTGTGAATGGAACTGTCTTCATCGGTTCACAGGATAAGGTTGTTTATGCTTTAGATGGTAGAAATGGATCTGTTGTTTGGAAGACAGATCTTGGCTGCCCAATTTGGGGTGCTGTCGCTCTGGACAACCAAAGAGGACTGCTATTCGTTGGCTGTACCACGGATAAGTCGAACGCAACGGATTCTCAAGACACACCTCATATTTTCGCCCTCGATGCCAACTTGGGAAAAATCGTGTGGACTTTTGACGGTGCTGGAAGCGTTTATGGCTCTCCAACACTTCTACCTGGTGGCCAAACCGTATTCTTTGCTTCCCTAGACCATAATATCTACGCTTTAGACCGCGAAACTGGTAAACTGTATTGGTCGTATGACACGGGGTCCGAAATAGAGTCCTCTCCAGTGGTCAGTAGGTTGGACGGTACCCTATACGTTGGCTTGATTAAGGGTCAACTGATTGCTGTTAACTCCGTAAGCGGTCctttggcgggaaaattgaAGTGGACAGTGAATACTGGCGGGGAGGTTGTGTCATCGCCTGTCATCACTGAGGACGGAAGGGTTTTTGTAGGATCTGGCGATGGGCGCATCTTGGCACTCAACCAAACTGACGGTTCACATATATGGTCTCCAACAACAGGTGACTACATCGTGGCGTCGGTGGCTGTTTCACGCGATAACGCCGTATACGCCGCTAGCTCGGATAAATTTGTTTACGCTCTACACGGTGATGATGGCTCTGTCATTTGGAAGTTTGAAACTGGCGCTGCTGTTGTTGCGACTCCAGCTCTTTTTCCAGAACAAGTTATGCCGATTGGATAAACTAAATGAAACATTGATCTGTTAATTTAAATAGATAGAactttaaaacagttttttgaaGGCAGGAAAACTAAAGCTTTAGTTAACAATAGAGTGGCCAGAGTACGAGAAAGAAGCTCAGCAACCAATAAAAATTCGTAAAAATGTACACGTGATCGTCGCTAAACGCGGGAAATCAAACGCGTGCGACCAAGTTGTGAGTtgctcatttgttttttctctaacTGATACATTTGTCGCAAATCTTGAAGTcttgagtttttttgttttgttttgttttgtttttcattttgtttgtttgtaatgccattattttttgaaaacaatgaagtataattatttatatacGAATATAATATATGAAAGAATCTTTTCAGTAACTTTTCTGTTGTAATGAAAAACCAACAGCAGTAAGCAGTTATAGGAATTACAttaaaaggaacaattttACTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22045	9,11-endoperoxide prostaglandin H2 reductase OS=Leishmania major OX=5664 GN=P100/11E PE=1 SV=3
Q4DJ07	9,11-endoperoxide prostaglandin H2 reductase OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511287.49 PE=1 SV=2
A1T726	Aldo-keto reductase Mvan_2161 OS=Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) OX=350058 GN=Mvan_2161 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00248 all species →	Aldo_ket_red	Aldo/keto reductase family	Domain	Interproscan
PF13570 all species →	PQQ_3	PQQ-like domain	Repeat	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan
PF01011 all species →	PQQ	PQQ enzyme repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR020471 all species →	Family	Aldo-keto reductase	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR023210 all species →	Domain	NADP-dependent oxidoreductase domain	Interproscan
IPR036812 all species →	Homologous_superfamily	NADP-dependent oxidoreductase domain superfamily	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR018170 all species →	Conserved_site	Aldo/keto reductase, conserved site	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43827 all species →	2,5-DIKETO-D-GLUCONIC ACID REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX42768.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.