Gene detail

Detailed information of RMX42836.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3263:273169...280470
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00005120

ATGGAAAGTTACGCAAGACCAAACAAACGGAGAAAGCTCGATGAAGTCCACGACTTACCCGGACCAACAGAAAGCCAATATCCTCACGAGCCCAGCTCTCAGGTAACCTATGGAGAACGTAAAAGAAATATACCTCAAGACCTGATCGACAAGTTGAACATCAGTTATGACGTCACGGAGAGATTACGGCGGCTAACGAAATTTTGTGGGAAAGCGGCTACCGCTGAGAAAATAGGAGGTGTTCTTACTGAAGGGGAAACGAATGATGGGTCAAACTACAACAGAGAGGAAATGACTAACGGGAATCACAACGAAGAAGACAAAGAAAGTGCAACTAAAGAAATCGGATGTAATAAATATGTAGATGGAGACTGCGAACGAGGTTTACCACCACTTCAAAATATTATGAAAGGCACAGAAACTGCAGCCTTAGACAATGAAGATAAATTTAAGGATGCCGCCAATAATGTGGAACAGGCCGCTCCTGATGTTCTTATATTCAAACAGGTGTTGAAAGAAATTATCGAACAGCGCACAAAGGTTGTTGAAGAAAAAGTGGCGGAAAATTCACTGAAACTTCAAAATCGGATACGAGAGCTCGAGAGAGAAAACAGAGAACTACAGTGGACTGCAAGGAGAATATTTGCTGCTTTTCGACAATTATTGATAGAGAATGAAAAAAGAAAAGAGCCAAAAACATCACGCGGAGTCCAAGTCAGCACCATCTGTGAATCGGCCTCTGAGAAAGAAGTCTCCGAAAGAACACTTCACATAACCACTGCCGCAAAGGTAAATGGTGTAAGCACAATTCTCGCGTCGACGACAGCAGCTCCCCTGACATCTATTGCATCAAAAGTTGTCACATTAGCAGAAGATCCACAACCCTCTCTTCAAGCAGCGCCAAGGGTGTTATTTGATTCGCAGCAACCCTTGACAGAGAAGCCGGCACCTACCGCTGTTGTGTACACTGTGAAACCCAGACTTGCCCAACTTGCAGAAAAGCAGAATGGTACTAGCACTCACAACCGTCTCCATGTGCCCCGTCCTTCAGCAAACGAATCCACAGCGGCTTTCTTACAAGTAGAACCAGGACAATCTTCGGAATCAATAGCCTCCAGAGCATTCAGCCAACCTCCTCCGGCTCTGCAGAATCAGGCAAAATCTCTTTTGGAACTGATTCGAGAAAATCAGCTTAAGCTATCCCAGCAAACGGAACGTCTGGAACGACAGCAGCAAATTCAACAGCAACGCACATCACATCCGTTGGTTCAATCAACGCAACATCATCCATCTGAAACTACAGCTTCCCTTTTACAACAATTGCAACGTCAGCAACAACTTCAGCAACGGCAACAACACTATCAGAAACTGGTGGAACGCCAACCGCATAAAACACTTCTACCAACATCAAGTCAAATAACTGATCAGGTCACACCCACTTTGTCAGTCTTTTCCTCCCAAAAGCAACGACATTCCACACCAGAACAACAAGTAAAATCTCAGTCCCAATTGGTCAGACCTTCAGATGAATCGCAGGAAAAGCGGCCGTCAGCTAATTCTTCTATTGCCTTGCTACAGCAAAGAGATAATTCAGCAATTTATCATAGGCCATCCCCAAGTCACATGCATTTCGTGGTAAACTCACAGACCAAGACATCGTCAGTTCCCTCGCATCCGCCAATCATGTTCAACACAAAACAGATTGATGAGGTCTTGAAACGCAACGAAACAGCTTTGCCTCCAAATGGGAAGAGTCCAATGTACATGTCAACCCCTCAAAGTGAACCTCCATCCCAGTCTACTTCTTCAAAACAAGCTCCAATTAATCTTCAAAGATCAAACTTAACGCACACGAAGCCTCCAGCACAGGAGGTGATTAAACATCACGTCCACCACGAACGGCATGTATTATCAGCACAGCCTGCTGCAGAAGTGACAGTGGAAAATGCGGTAGCACGAGGTCAAACGAATACAACACTTTCTCAGCGCCTAGTATCAACTGACATTTTCCATGCTCGACCAAAATCAGTCGGTATGCAAAAGCATGCGCAGCATCCAAGCTCTCAATTGCAGAATATGCAATCACGACCACCACCTCAAGTTGCAACCCAAATGCAGAACACAACTGAAACCAGGCGTGAACAAGAGGTTTCCTCCTCCCTGTCTACAGCAATCGCCAAGCACAAACCAATTCAATCGGATGTTTCAAGCATGCCACAAACTATTTTGGTTCCAGCTCGCAAAAAACATACAAGTGAAGAGCTCCTTCCTTCTGGTTACAGATTCTCGCTTCCATCACCTGAGTATCTTCTTCAGCGTCGGAAGCTATATGAACAAACGCAAAACCATGCTCAATCGCTGACTTCCCAAAGTAGACAAGTATCCATGACTCATTCCCTTGAAAATAACTCTTTGAATGAGAGAATTATGGTCTCTTCGACGCATTCTAGTGGACACGCAGAAGCTGTATATACGGTGCAGTCCTCCAACTTTCACACCACAGCCATCCCAACTCGACCATTCCATCAAAATGGGCAGCGCGTTGATGTACCAAGCCAGTTGCCTCATACGGACGCTTATAACCCTTTTCTATGTCGACCATCAGATATTCTACTGTCGCAGAAGAAGCAACATGAAAACCTTTCACAGTCTCGTAACCAGTTATACAAACCACTTCAAGGGCAAGAACAAGGTCAGTTACCTACAGGAACAGACGGAGGTGGAAATCTTCGAAGTAGCGTACCATCTCTACATAGGCCTCCCATCCAATCTCCAGGAATATCCTCGAGTGATCCACGTATTGAGAAGAATCCCCGTGAGGCTGAAAAATCAAGTATGGCAAACAGTTTAACCCGGAGTTCTTTAAGCGATCATGGAGATGCACTAAAACCTCTTCCTAAGCCGTCAGCGTCGATTGCTGCGAGGGAGAAAAAAATTGTTCTCTCTTGGAATATGGAACATGATGACACATCAGTCAAAGTAGATAATTACGAACTGTTTGCATGCCAAGATGTCGACGAAAGCAAAGGCCAACCAATCAAGTGGAAAAAGATAGGTATCGTGAAAGCTCTTCCACTTCCAATGGCTTGTACACTCACTCAGTTCTCTTCTGGCAGCAAGTATTTCTTTTCTGTTCGAGCAGTGGATGAAAAAGAACGAGCTGGTCCATTTAGTGATCCGTGTACTGTCTCACTAAGTTCTCACAAAGTTGCTTGA

Transcript

rna-pdam_00005120

GGAGTTCCTTATTTGGGATGCTGTGGCACCAATTTCAGAAGCAAAATGTCTCCACTATGTCTATCAAAATGTCTTCATTCGTAGCAAGGTCTTCCCTAACACtactcaaaggaaaatttgaagatgCATAGCAAGAGAAGTGATctgatgattttaatttaaggttaaaaatttatgtttaatttgctCATAGAAGCAGGAAACGAGGATGGAAAGTTACGCAAGACCAAACAAACGGAGaaAGCTCGATGAAGTCCACGACTTACCCGGACCAACAGAAAGCCAATATCCTCACGAGCCCAGCTCTCAGGTAACCTATGGAGAACGTAAAAGAAATATACCTCAAGACCTGATCGACAAGTTGAACATCAGTTATGACGTCACGGAGAGATTACGGCGGCTAACGAAATTTTGTGGGAAAGCGGCTACCGCTGAGAAAATAGGAGGTGTTCTTACTGAAGGGGAAACGAATGATGGGTCAAACTACAACAGAGAGGAAATGACTAACGGGAATCACAACgaagaagacaaagaaagtGCAACTAAAGAAATCGGATGTAATAAATATGTAGATGGAGACTGCGAACGAGgtTTACCACcacttcaaaatattatgaaagGCACAGAAACTGCAGCCTTAGACAATGAAGATAAATTTAAGGATGCCGCCAATAATGTGGAACAGGCCGCTCCTGATGTTCTTATATTCAAACAGgtgttgaaagaaattatcgAACAGCGCACAAAGgttgttgaagaaaaagtgGCGGAAAATTCACTGAAACTTCAAAATCGGATACGAGAGCTCGAGAGAGAAAACAGAGAACTACAGTGGACTGCAAGGAGAATATTTGCTGCTTTTCGACAATTATTGATAGAGAATGAAAAAagaaaagaGCCAAAAACATCACGCGGAGTCCAAGTCAGCACCATCTGTGAATCGGCCTCTGAGAAAGAAGTCTCCGAAAGAACACTTCACATAACCACTGCCGCAAAGGTAAATGGTGTAAGCACAATTCTCGCGTCGACGACAGCAGCTCCCCTGACATCTATTGCATCAAAAGTTGTCACATTAGCAGAAGATCCACAACCCTCTCTTCAAGCAGCGCCAAGGGTGTTATTTGATTCGCAGCAACCCTTGACAGAGAAGCCGGCACCTACCGCTGTTGTGTACACTGTGAAACCCAGACTTGCCCAACTTGCAGAAAAGCAGAATGGTACTAGCACTCACAACCGTCTCCATGTGCCCCGTCCTTCAGCAAACGAATCCACAGCGGCTTTCTTACAAGTAGAACCAGGACAATCTTCGGAATCAATAGCCTCCAGAGCATTCAGCCAACCTCCTCCGGCTCTGCAGAATCAGGCAAAATCTCTTTTGGAACTGATTCGAGAAAATCAGCTTAAGCTATCCCAGCAAACGGAACGTCTGGAACGACAGCAGCAAATTCAACAGCAACGCACATCACATCCGTTGGTTCAATCAACGCAACATCATCCATCTGAAACTACAGCTTCCCTTTTACAACAATTGCAACGTCAGCAACAACTTCAGCAACGGCAACAACACTATCAGAAACTGGTGGAACGCCAACCGCATAAAACACTTCTACCAACATCAAGTCAAATAACTGATCAGGTCACACCCACTTTGTCAGTCTTTTCCTCCCAAAAGCAACGACATTCCACACCAGAACAACAAGTAAAATCTCAGTCCCAATTGGTCAGACCTTCAGATGAATCGCAGGAAAAGCGGCCGTCAGCTAATTCTTCTATTGCCTTGCTACAGCAAAGAGATAATTCAGCAATTTATCATAGGCCATCCCCAAGTCACATGCATTTCGTGGTAAACTCACAGACCAAGACATCGTCAGTTCCCTCGCATCCGCCAATCATGTTCAACACAAAACAGATTGATGAGGTCTTGAAACGCAACGAAACAGCTTTGCCTCCAAATGGGAAGAGTCCAATGTACATGTCAACCCCTCAAAGTGAACCTCCATCCCAGTCTACTTCTTCAAAACAAGCTCCAATTAATCTTCAAAGATCAAACTTAACGCACACGAAGCCTCCAGCACAGGAGGTGATTAAACATCACGTCCACCACGAACGGCATGTATTATCAGCACAGCCTGCTGCAGAAGTGACAGTGGAAAATGCGGTAGCACGAGGTCAAACGAATACAACACTTTCTCAGCGCCTAGTATCAACTGACATTTTCCATGCTCGACCAAAATCAGTCGGTATGCAAAAGCATGCGCAGCATCCAAGCTCTCAATTGCAGAATATGCAATCACGACCACCACCTCAAGTTGCAACCCAAATGCAGAACACAACTGAAACCAGGCGTGAACAAGAGGTTTCCTCCTCCCTGTCTACAGCAATCGCCAAGCACAAACCAATTCAATCGGATGTTTCAAGCATGCCACAAACTATTTTGGTTCCAGCTCGCAAAAAACATACAAGTGAAGAGCTCCTTCCTTCTGGTTACAGATTCTCGCTTCCATCACCTGAGTATCTTCTTCAGCGTCGGAAGCTATATGAACAAACGCAAAACCATGCTCAATCGCTGACTTCCCAAAGTAGACAAGTATCCATGACTCATTCCCTTGAAAATAACTCTTTGAATGAGAGAATTATGGTCTCTTCGACGCATTCTAGTGGACACGCAGAAGCTGTATATACGGTGCAGTCCTCCAACTTTCACACCACAGCCATCCCAACTCGACCATTCCATCAAAATGGGCAGCGCGTTGATGTACCAAGCCAGTTGCCTCATACGGACGCTTATAACCCTTTTCTATGTCGACCATCAGATATTCTACTGTCGCAGAAGAAGCAACATGAAAACCTTTCACAGTCTCGTAACCAGTTATACAAACCACTTCAAGGGCAAGAACAAGGTCAGTTACCTACAGGAACAGACGGAGGTGGAAATCTTCGAAGTAGCGTACCATCTCTACATAGGCCTCCCATCCAATCTCCAGGAATATCCTCGAGTGATCCACGTATTGAGAAGAATCCCCGTGAGGCTGAAAAATCAAGTATGGCAAACAGTTTAACCCGGAGTTCTTTAAGCGATCATGGAGATGCACTAAAACCTCTTCCTAAGCCGTCAGCGTCGATTGCTGcgagggagaaaaaaattgttctctctTGGAATATGGAACATGATGACACATCAGTCAAAGTAGATAATTACGAACTGTTTGCATGCCAAGATGTCGACGAAAGCAAAGGCCAACCAATCAAGTGGAAAAAGATAGGTATCGTGAAAGCTCTTCCACTTCCAATGGCTTGTACACTCACTCAGTTCTCTTCTGGCAGCaagtatttcttttctgttcgAGCAGTGGATGAAAAAGAACGAGCTGGTCCATTTAGTGATCCGTGTACTGTCTCACTAAGTTCTCACAAAGTTGCTTGATATGCAACTGAACGAAAACTTACCCAGgctatttaataatttattcattttttttgaggggggAGGGATGTGACGATTTCTCgacattgttttgatttttctataACATTGTCGAGTacgttttttgtttgtttttttgcttggattatataaaaaattgtaaaatgataACACCGAGTAGAATTGTCAAATTAAGTAAATTGAGATTGGAAACATGAGAGGACTCCGATAGTATTTGGTTTGTCCTTCCTAATGTTCCTTTCCTTTGCAATGTGATCATTGTGCTCATAAAGGCTTTGTTCGCCTTGCTCCTCAGGCTACTTTCACTTCCAAATAGgtttttccactttcttgAAGCCCTCTTCCTGATCGATAAAATTCTCCATGAACGTTTCTCGGTTTTCTAAATAAGCATGAATCAGTGATATCACTGAGACCTCATTTGCTATTTTGTAATTTCGTCATAAAAGCGATAGCGAAAAGTCAGACAAAATCCACATAATACGTTATAGACACAGGTGCGTCTTACATTTAAAAGTAATGATGGTGGAGCTCGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIE8	Activating transcription factor 7-interacting protein 1 OS=Gallus gallus OX=9031 GN=ATF7IP PE=2 SV=1
Q6VMQ6	Activating transcription factor 7-interacting protein 1 OS=Homo sapiens OX=9606 GN=ATF7IP PE=1 SV=3
Q7TT18	Activating transcription factor 7-interacting protein 1 OS=Mus musculus OX=10090 GN=Atf7ip PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001295 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16794 all species →	fn3_4	Fibronectin-III type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR026085 all species →	Family	Activating transcription factor 7-interacting protein	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23210 all species →	ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0090309 all species →	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX42836.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.