Gene detail

Detailed information of RMX42850.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3263:28520...36559
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00005095

aataaacatgGCGGTTGAGCTATAGTGTACAAGAAAATCCTCTCTATCGACTTTTGCTATCGCCTTGCGAACTGTTAAAGTTTATGTGAAGATGATCAGGGCTAAAATAACACCTAAGAAGTTCTTCCCAAATAATTTGATCGCATGGAAAAGCACTTTAAGGAGCGCAGAAAAATCCCTTGATTTGGACAACCGCGATATGTTAGATAGCTCAGTTGCAGGGGATACTAAATTTGCCGCTTCTAAGAGAGGAAGTTTCTTTCAAGAAGCGCCAAGGCTTGGAAATCAATTCAGTGGAGATCTATTTCTGCAATCGTACTTGAAGAGAGTCCTTCCATATGAGGTTTTACAAGAAATCTTTCCAGACTTACAGCACTTTGGCCACAGAGTGGCCACTGATATTTACTCAATGGGAAGGGAATGTGAGCTACAGCCACCAAAACTTGAACAATTTGATGCTTGGGGAAAAAGGGTGGACAATATTCAGACTTGCCAGGGGTGGAGACAGTTACATGATGTGTCAGCTGAAGAAGGATTGATATCCATTCCTTATGAAAGAAAGTATGGACAGTGGAGtCGTATCTACCAAGCTGCGAAACTGTTCatgttttctccttcttctgGTTTGTATTCTTGTCCTTTGGCCATGACAGATGGAGCAGCTAAGAGTATTGAGTTGTCAAATATGACAGAGAAGCTTAGTGTTCTTAAAGATGCCTACAGCCATTTGACCAGCAGAGATCCAAAGAAATTCTGGACATCTGGTCAGTGGATGACTGAGAGGAAAGGGGGCTCAGATGTAGCAAATGGTACAGAGACAATTGCTGTCCCTCAAGACGATGACACCTACAGACTGTATGGTTATAAGTGGTTCAGCTCAGCTACTGATGCAGACATGACACTCACTCTTGGGAGAGTCCAGAACCCTGATGGATCTACTGTACCTGGCACCAAAGGCATTACAATGTTTTACATGCAAACTCATAATGAAGATGgcaaattaaacaatattGAAGTCCAGagattgaaaaataagttGGGAACCAGGCAGCTTCCTACTGCTGAGCTTCTTCTTCATGGATCACAAGCCTACAAGaTGTCTGATGAGGGTCGTGGAGTGCCTTGTATATCAGACATGTTAACAATCACTCGTTTTCACAACAGCATTGTAGCTGCAGGTGTCATGAGAAGAATTATGTCTCTGGCTCAGGATTATTGTTTGAGAAGATCAGTGTTTGGTAAACTATTGGTGGAACATCCCCTTCATATGCAGACACTTGCTAAAATAGAGGTGGAGACCCGCGCGGCCTTCCTGCTCTCAATGGAAGTTGCCCGTCTGCTTGGTAAACAGGATTGCAACGAGGCCTCAGATGTAGAGACACAGCTGTTGAGACTTCTTACTCCTATCACAAAGCTGTACACTGCTAAACAGGCCATGCAGGTTACCTCAGAAGGTCTTGAGAGTTTTGGTGGTCAAGGATACATAGAAGACACAGGGTTACCAGGCTTGATGAGGGATGCTCAGGTACTGTGGCTATTTGTTAgtattagtttaaaaaaaaaaatgataccaATTCTTCTTACTTGTTGACTGAATTGCGCTAACGTTAGTGATGAGAACTTGGTTTTACAGCAGAAAACCGTTGCTGGTAATATACTAATCTGTTACATTCTTGATCTTGCTGCAAACTGTACTCGAGTGCGATTTGCGTACAATCCAGTGATTTTCTGATTATATCATTTTAGCCGAATGATCTGCCCTAAAACGTGAATATTCTACCACTAAATTTATTCGAATTTGATTTGCAATAAACTACAAACCGAAAGCTACTATATGCATTTATAACTAGCAGGAATACTACAGATTGTCTAGAAGTGACAAATAAATGTTGTTTGCATATTTAGGCAAAACTTCCTCTCAATGAAGATTAATTGCAgcttattaaaattattaacttCGCTTATGGATAACTCAATAGGCAAcatataaaaccaaataagCCTTTGCTGTACTATGTATGGTTGTGTTCATTGGATGAGAACTTCAGCAATTGAATCTGAGTCATCATTTGCTGAACTTTTAAAAGGATAGCACTTTAAGTGAATGTAGTTTTGAAGATACtagattttttaatattttcagatttttgtaTTAGCAAATTCAATCAAATGTTATAGTTGCTTCAAAAGTTGCTCAGACCCTTTCAGGGTTAGTCgtcatttatgtttttcaatctAGTTTCTTATCGCCCTTGGAGTGTTGGTAAGCATTTACATTGAGTGTCTTCTGAAAAGATTATTAATTACCTTGGCGATATGTCTAAGACTTTTTATCCATTCCAGGCATTTACATTTGCATCAGCTTGTTTGCTTAACAGTTTCATTAAAACTATATGGAAATACGCGATAACTACTTAAAATGGGCTGCGAtcatttaaaga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XWZ2	Acyl-CoA dehydrogenase family member 11 OS=Caenorhabditis elegans OX=6239 GN=acdh-11 PE=1 SV=1
Q5RBD5	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii OX=9601 GN=IVD PE=2 SV=1
P26440	Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=IVD PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF18158 all species →	AidB_N	Adaptive response protein AidB N-terminal domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR041504 all species →	Domain	Adaptive response protein AidB, N-terminal	Interproscan
IPR052904 all species →	Family	Acyl-CoA dehydrogenase-like protein	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42707 all species →	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX42850.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.