Gene detail

Detailed information of RMX42967.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3257:23658...55384
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00001759

ATGGCGGCTGTTAACACCAGCAACTTTCCAATTCACGGGCTTTTACCTAAGCGAGAAACGGGCGCTGATAGATTTTTGGCGAAGTATCCTGAGTATGATGGTCGTGGAATTGTAATCGCTGTGTTTGATACTGGAGTTGATCCAGGAGCTCCCGGTTTACAAGAAACTCCTGATGGACGACGAAAAATAATTGATTTAATTGATGCCAGTGGGAGTGGTGATGTTGATACCTCAACAGTCGCTGAGGCTATTGATGGCTGTGTGACAGGACTTACAGGAAGGAAACTAAGGATTCCAGATGACTGGGAGAATCCCTCAGGCAAGTTTTTCATTGGTGTGAGGAGTGCTTACAGTTTGTTTCCAGCAAAGCTGAGAGAGAGACGAGTGCACAAGAAGTTAATCAGAGAAGACCTTCAAGCTCAAGTAGAGATCCTTGCCAGTCTTGAAAAGAATTACTCTGACACTGGTCCTGTTTTTGACTGTATGGTGTTTCATGATGGACACACTTGGAGAGCTTGTGTTGACACATCTGAGAGTGGAGACTTAGCCAGCTGTACTCTTCTGGCCAATTACCGAGAATCTGGACAGTATGCCACATTTGGAAAAGAAGATTTGTTCAACTACAGTATCACTGTTTACGAAGAAGGCAAAATACTGTCAATAGTAGCAAATGGAGGTACTCATGGCACCCATGTGGCTAGCATAGCAGCAGGGTATTGTCCAGATGATCCAGCACTGACAGGCATTGCTCCTGGTGCTCAGATTCTCTCAGTTAAAATTGGTGATTCAAGATTAAAAACCATGGAAACTGGAGCCTCCATGATAAGAGGATTGATTGCAGTTCATCAACGAATAATAGAACTCATGAATGAACTTGTGGACAAACACAAAGTGATATTTGTGTCCAGCGCTGGTAACAATGGCCCAGCTCTATCCACAGTTGGATGTCCAGGGGGCACTGCAGAGTCTCTTATAGGTGTTGGAGCTTATGTATCACCAGACATGATGGCTGCTGAGTATTCTATGTTGGAAAAACTTCCCGGAAATCAATATACATGGTCCTCAAGGGGTCCAACCACAGATGGCTCATTAGGTGTGAATATCAGCGCACCGGGCGGAGCAATAGCTGCTGTCCCCAACTGGACGCTGAGAGGAACACAACTGATGAATGGAACATCAATGTCTTCACCTAATGCTTGTGGAGGAGTTGCTCTCCTGCTATCGGGTCTCAAAGCAAATGATATTGCCTATTCTCCGCACAGCATTCGTAGAGCATTGGAAAATACTGCCCTTCATGTGGAAGGACTTGATAGACTCACCTTAGGACATGGCCTCTTACAGGTCGACAAAGCGTTTGACTTTTGTCGAGAATTTTCAAGAGTTCCAGAAAGAGATGTTAGATTTCAGATTTCTTGTTCTTCTGGCAAGAGAGGAATTTATCTTCGTGAATCCAGTCAGCTGTGTAAACCCTTCTTTGACCAAGTGTCTGTGTCAACACATTATGATGAAGATGTTGCTAACGATGACAGATTAAACCTCAACCTCCGACTTAGTTTGGTCAGTTCAGTATCGTGGGTGACTGTACCGGATCATTTTGTCCTCATGAATACAACGAATACAGTGCGCAATTTCTATGTCAAGGTTGATCCTCTGGGTTTGCCGCACGGGGCGCATTATGCTGAGGTGTCCGCTTACGACATTAGCTGTCCACAGCGAGGACCGTTGTTCAGAGTTCCAATAACAGTCATTAAACCCAACAGTGTTAGCGATGTGAACCATTATGTGTACGAGTTGGAAGACGTGAAGTTTAAACCCGGACAGGTGCATAGGAGTTTTGTTCATGTCCCGGAGGGAGCAACGTGGGCGGAATTTTCAGCCTTGTCACTTGAAGAAGAAGTCTACGGACTCTTTATTCTCCATGCCGTTCAGTTGTCGCCTCTTTCGTCTTTTAAGGAACACGAGTTCCTCCAATATATTCCCCTTTCATCGCTGAGCGAGAAAACCTATAGTTTCGCAGTAAAGGGAGGTGAGACGTTGGAGTTGTGCACAGCAAAATGGTGGGCTAGCTTAGGAGAGTGTGCCGTCAAAAGAAGTGTCACGTTTCATGGAGTTAATCCCAGTGAAAAGAGCATAACACTGCAAACGTCAAAGGTCTGCCGAGTGGATGTTAAAACTGCTCTGAGGGAGGAACAAATCAACCCAACTGTATCGCTCAAGACACATGCACAGCCAGTCAGACCTTCAGAATACAAGATCAACGCGCTTGGTTCGAGAGATGTCTTGCCGAACGGAAGGCAAATTTTTGCTTTAACTCTCACTTATAATTTTCACCAGTCCAAAGCGGGTGAAGTGAGTCCCAATGCAACATACCTGTCTGACTTGTTATACGAATCTGAATACGAGTCTCAACTGTGGATGATTTTCGACTCTAACAAAAGGATGCTGGGAAGCGGAGATGCATTTCCTGACCGGTACTCAGTCAAGTTAGAAAAGGGAGATTACGTGCTGAAGCTTCAGGTTCGACATGACAACAAGGATCAACTTGAGAAATTGAAAGACACCGTCATCTTAATAGAGCAGAAACTTTCGCCCGCTATCACTCTAGACACACATTCCTCACGTCTCGCCGCAATGAAATCTACCAAGTTCAATTCAGGCAATAAAAGGCCGGGCTCTTGTTGTCCTGTCTACATAATGCCTCCAGGAGATGACAAGATTCCCAAAGCTGCCAAATCTGGGCACATCCTGAAGGGAACAATTTCTTACGTGAAAAGCGAGACTGTTAAAAAAGCGTGCGCTTACCCAGTTCAGTACGTTGTTCCGGCCGCACCTATTAAACAGAACAGCAAAGCAGCTACCACCAAACCGGTGGAAAAAGAGATGAAACAACAGTTTGAGGAGGCAATGAGAGACCTTAAAATCTCTTGGATACCAAAACTTGGTGATGTAACTCTGTATGACGAGCTTGCGGAGCAGTATTCAGATCATTTACCGCTACATGTAGCAAGACTCCATTTCTTAGACAATTCTAAAGATAGACTTCAAAGGCTTCCACAAGTTATAGTTGCAGCGGAAAAAGTCATACAAATGATAGATTTTGTTGAGTTGTCCAGTTATTACGGTATGAAGACCGACACTCGGCCAGACGCCATTATCATCAAGAGTGAGAAAGACAGCCAAAAAGCTACATTAATAGACGCTTTGTGTCGTAAGGGAATAGCTCTAGCTGACAGGATACTGGAAAAATCTTCAGATAGTAAGGAAACCACAGACGATGGAGATGCAAGTAGTTCGGATGACCAGGCGGAGACAGAGGAAGCAATCTATGAAAGACTTGATGAGACTTTCAAGGAACTTGTTAAGTGGATTGACGCATCAGACCCTAAGGTTCTGCCGTTTTACATTCGCCGCGCGCAGGCAATGAAGCTCTACGGCCTTGCCCTGAAGGCTTCAATGAAACAAAATGGCGATGGCACGCCTAACAGGGTAAACGATGACAGGAACATCCTGTTGTTCGAGAAGCTTGGCTGGGAACATTGTGCGCGACTCACCAGAGAGAGTCTTCCGGTGAAGTATCCTGCCTCCTATCAGCCGTTTTAA

Transcript

rna-pdam_00001759

ATGGCGGCTGTTAACACCAGCAACTTTCCAATTCACGGGCTTTTACCTAAGCGAGAAACGGGCGCTGATAGATTTTTGGCGAAGTATCCTGAGTATGATGGTCGTGGAATTGTAATCGCTGTGTTTGATACTGGAGTTGATCCAGGAGCTCCCGGTTTACAAgaaactcCTGATGGACGacgaaaaataattgatttaattgatGCCAGTGGGAGTGGTGATGTTGATACCTCAACAGTCGCTGAGGCTATTGATGGCTGTGTGACAGGACTTACAGGAAGGAAACTAAGgattcCAGATGACTGGGAGAATCCCTCAGGCAAGTTTTTCATTGGTGTGAGGAGTGCTTACAGTTTGTTTCCAGCAAAGCTGAGAGAGAGACGAGTGCACAAGAAGTTAATCAGAGAAGACCTTCAAGCTCAAGTAGAGATCCTTGCCAGTCTTGAAAAGAATTACTCTGACACTGGTCCTGTTTTTGACTGTATGGTGTTTCATGATGGACACACTTGGAGAGCTTGTGTTGACACATCTGAGAGTGGAGACTTAGCCAGCTGTACTCTTCTGGCCAATTACCGAGAATCTGGACAGTATGCCACATTTGGAAAAGAAGatttgttCAACTACAGTATCACTGTTTACGAAGAAGGCAAAATACTGTCAATAGTAGCAAATGGAGGTACTCATGGCACCCATGTGGCTAGCATAGCAGCAGGGTATTGTCCAGATGATCCAGCACTGACAGGCATTGCTCCTGGTGCTCAGattCTCTCAGTTAAAATTGGTGATTCAAGATTAAAAACCATGGAAACTGGAGCCTCCATGATAAGAGGAttgatTGCAGTTCATCAaCGAATAATAGAACTCATGAATGAACTTGTGGACAAACACAAAGTGATATTTGTGTCCAGCGCTGGTAACAATGGCCCAGCTCTATCCACAGTTGGATGTCCAGGGGGCACTGCAGAGTCTCTTATAGGTGTTGGAGCTTATGTATCACCAGACATGATGGCTGCTGAGTATTCTATGTTGGAAAAACTTCCCGGAAATCAATATACATGGTCCTCAAGGGGTCCAACCACAGATGGCTCATTAGGTGTGAATATCAGCGCACCGGGCGGAGCAATAGCTGCTGTCCCCAACTGGACGCTGAGAGGAACACAACTGATGAATGGAACATCAATGTCTTCACCTAATGCTTGTGGAGGAGTTGCTCTCCTGCTATCGGGTCTCAAAGCAAATGATATTGCCTATTCTCCGCACAGCATTCGTAGAGCATTGGAAAATACTGCCCTTCATGTGGAAGgACTTGATAGACTCACCTTAGGACATGGCCTCTTACAGgtCGACAAAGCGTTTGACTTTTGTCGAGAATTTTCAAGAGTTCCAGAAAGAGATGTTAGATTTCAGatttcttgttcttctgGCAAGAGAGGAATTTATCTTCGTGAATCCAGTCAGCTGTGTAAACCCTTCTTTGACCAAGTGTCTGTGTCAACACATTATGATGAAGATGTTGCTAACGATGACAGATTAAACCTCAACCTCCGACTTAGTTTGGTCAGTTCAGTATCGTGGGTGACTGTACCGGATCATTTTGTCCTCATGAATACAACGAATACAGtgCGCAATTTCTATGTCAAGGTTGATCCTCTGGGTTTGCCGCACGGGGCGCATTATGCTGAGGTGTCCGCTTACGACATTAGCTGTCCACAGCGAGGACCGTTGTTCAGAGTTCCAATAACAGTCATTAAACCCAACAGTGTTAGCGATGTGAACCATTATGTGTACGAGTTGGAAGACGTGAAGTTTAAACCCGGACAGGTGCATAGGAGTTTTGTTCATGTCCCGGAGGGAGCAACGTGGGCggaaTTTTCAGCCTTGTCACTTGAAGAAGAAGTCTACGGACTCTTTATTCTCCATGCCGTTCAGTTGTCGCCTCTTTCGTCTTTTAAGGAACACGAGTTCCTCCAATATATTCCCCTTTCATCGCTGAGCGAGAAAACCTATAGTTTCGCAGTAAAGggAGGTGAGACGTTGGAGTTGTGCACAGCAAAATGGTGGGCTAGCTTAGGAGAGTGTGCCGTCAAAAGAAGTGTCACGTTTCATGGAGTTAATCCCAGTGAAAAGAGCATAACACTGCAAACGTCAAAGGTCTGCCGAGTGGATGTTAAAACTGCTCTGAGGGAGGAACAAATCAACCCAACTGTATCGCTCAAGACACATGCACAGCCAGTCAGACCTTCAGAATACAAGATCAACGCGCTTGGTTCGAGAGATGTCTTGCCGAACGGAAGgcaaatttttgctttaactCTCACTTATAATTTTCACCAGTCCAAAGCGGGTGAAGTGAGTCCCAATGCAACATACCTGTCTGACTTGTTATACGAATCTGAATACGAGTCTCAACTGTGGATGATTTTCGACTCTAACAAAAGGATGCTGGGAAGCGGAGATGCATTTCCTGACCGGTACTCAGTCAAGTTAGAAAAGGGAGATTACGTGCTGAAGCTTCAGGTTCGACATGACAACAAGGATCAACttgagaaattgaaagacaCCGTCATCTTAATAGAGCAGAAACTTTCGCCCGCTATCACTCTAGACACACATTCCTCACGTCTCGCCGCAATGAAATCTACCAAGTTCAATTCAGGCAATAAAAGGCCGGGCTCTTGTTGTCCTGTCTACATAATGCCTCCAGGAGATGACAAGATTCCCAAAGCTGCCAAATCTGGGCACATCCTGAAGGGAACAATTTCTTACGTGAAAAGCGAGACTGTTAAAAAAGCGTGCGCTTACCCAGTTCAGTACGTTGTTCCGGCCGCACCTATTAAACAGAACAGCAAAGCAGCTACCACCAAACCGGTGGAAAAAGAGATGAAACAACAGTTTGAGGAGGCAATGAGAGACCTTAAAATCTCTTGGATACCAAAaCTTGGTGATGTAACTCTGTATGACGAGCTTGCGGAGCAGTATTCAGATCATTTACCGCTACATGTAGCAAGACTCCATTTCTTAGACAATTCTAAAGATAGACTTCAAAGGCTTCCACAAGTTATAGTTGCAGCGGAAAAAGTCATACAAATGATAGATTTTGTTGAGTTGTCCAGTTATTACGGTATGAAGACCGACACTCGGCCAGACGCCATTATCATCAAGAGTGAGAAAGACAGCCAAAAAGCTACATTAATAGACGCTTTGTGTCGTAAGGGAATAGCTCTAGCTGACAGGATACTGGAAAAATCTTCAGATAGTAAGGAAACCACAGACGATGGAGATGCAAGTAGTTCGGATGACCAGGCGGAGACAGAGGAAGCAATCTATGAAAGACTTGATGAGACTTTCAAGGAACTTGTTAAGTGGATTGACGCATCAGACCCTAAGGTTCTGCCGTTTTACATTCGCCGCGCGCAGGCAATGAAGCTCTACGGCCTTGCCCTGAAGGcttcaatgaaacaaaatggcgaTGGCACGCCTAACAGGGTAAACGATGACAGGAACATCCTGttgttCGAGAAGCTTGGCTGGGAACATTGTGCGCGACTCACCAGAGAGAGTCTTCCGGTGAAGTATCCTGCCTCCTATCAGCCGTTTTAATGAACACTTTTGCTGTAGCTTTTATATCGCTGTTTCATTTTGACAGGTTTAACTGAATTAAATGCACGCGGGCACGTGTAGCACGAAAAGTACTAAATTTACTTACATGATGCACTTCTTTGTATATGGACAGTGCTGTTTAGACCTTTAACTCTTGTTCTCAgatcaaaatatcaatgaaTAAGTTGCCAGTTATCGAATCCTTGTGTATGCGCAAAGATTTCAGGAATCGCCACGGGGCAAACATTGGTAGTTGCTAGAAAGAAATATATGGCGATAGGTCTTTTCGacttccgaaaaaaaaaaccattttggaGAGAGAGCAACGCTTTTCCGCCGCATTTTCATCACGCGCAAATACAAGGATCCGATTACTGGCAACTCATTCATTCTCTgtactgtctgccatactttttttactatttaagaaaagagaattttgttttcaatcaatCCGTGTTACGTGGTTGATATGTCTGTGCTCTTATCACTTTTCTACCTGGAAGTATAGTTTAATTTGAAGGAGATATAACATATTGTTCTTTCCTGTGAAAAGGTTAAGTAcgcaattttcaaatgttgcCAAGGATATGTAAAACTGCTTGATGAACAGATCGATTCAAAAATGaatctaataaaaaaacacgCTGTTGTCACGTTTCGGCCGTTCTTTTTGAAGTGAAAGTTTTGTAATACCGACTTAAGCAAGTGAAAATCCACTcatgaacaaaatgatttcTCGACGCAGCCATGTGGTTATTTTAAGTGCAAGATGATTAGATTTAACTAGACTACTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PK39	Tripeptidyl-peptidase 2 OS=Bos taurus OX=9913 GN=TPP2 PE=2 SV=1
Q64560	Tripeptidyl-peptidase 2 OS=Rattus norvegicus OX=10116 GN=Tpp2 PE=2 SV=3
P29144	Tripeptidyl-peptidase 2 OS=Homo sapiens OX=9606 GN=TPP2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002921 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21316 all species →	TPPII_GBD	TPPII, galactose-binding domain-like	Domain	Interproscan
PF21223 all species →	TPPII_Ig-like-1	Tripeptidyl-peptidase II, first Ig-like domain	Domain	Interproscan
PF12583 all species →	TPPII_C	Tripeptidyl peptidase II, C-terminal	Domain	Interproscan
PF12580 all species →	TPPII	Tripeptidyl peptidase II	Family	Interproscan
PF00082 all species →	Peptidase_S8	Subtilase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048384 all species →	Domain	Tripeptidyl-peptidase II, galactose-binding domain-like	Interproscan
IPR046940 all species →	Homologous_superfamily	Tripeptidyl peptidase II, Ig-like domain superfamily	Interproscan
IPR036852 all species →	Homologous_superfamily	Peptidase S8/S53 domain superfamily	Interproscan
IPR015500 all species →	Family	Peptidase S8, subtilisin-related	Interproscan
IPR048383 all species →	Domain	Tripeptidyl-peptidase II, first Ig-like domain	Interproscan
IPR034051 all species →	Domain	Tripeptidyl-peptidase II domain	Interproscan
IPR022232 all species →	Domain	Tripeptidyl peptidase II, C-terminal domain, arthropoda	Interproscan
IPR050131 all species →	Family	Subtilisin-like serine protease	Interproscan
IPR022229 all species →	Domain	Tripeptidyl peptidase II, second Ig-like domain	Interproscan
IPR046939 all species →	Homologous_superfamily	Tripeptidyl-peptidase 2, C-terminal domain superfamily	Interproscan
IPR000209 all species →	Domain	Peptidase S8/S53 domain	Interproscan
IPR023828 all species →	Active_site	Peptidase S8, subtilisin, Ser-active site	Interproscan
IPR022398 all species →	Active_site	Peptidase S8, subtilisin, His-active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43806 all species →	PEPTIDASE S8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008240 all species →	Molecular Function	tripeptidyl-peptidase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01280	TPP2; tripeptidyl-peptidase II	EC:3.4.14.10	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Pocillopora damicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Pocillopora damicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →