Gene detail

Detailed information of RMX43008.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3257:58924...70248
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00001760

CACCGCGAAGATCGTTTGTCAGGGCCTGAAGTCGGTGCAAAAACATGTCCGCTCAAGCGAGGAATTGAGAAATTATAGCTTGATTTCTGCCAAACTAGCCCTAAAAACATGCCTCGTTAAGCAATCTTGCGATAGATATTACATTTCTTCGTACTTTCCGAGCGATCGCGTTGAAATCAGACCGAGATCAAGTTCGCGATTTCGACGAGTTTGTCTCGCATCCCAGCCACATAGTCTTTGCGCAAATTGGAGTACACGAATCACCCATGCGATCTTTTCGAGCTGTAGTGAGAGGTATAACGTCAATTTAGATTGTACCGATGTCGAATCCAGCAGCCACACTCACAAGCTTGTGGATAGAAGGTCAACCAAGCCCTGTGAAGAGTAACCCAGCTACTCCAGTGAAAGGAGTTGTGAATCGGGACGCTACAGTGGTTTCAGAAGACTTCTTAAAGTTTTACAAAGATAGTGGACTTGAACCTTTAGCCCGAGAGGCTGGCGTGATAGACAACAACGGAACACTAGACGGACTGAAAGATTCCACCTCTCATCCAAGAGTCAATTCTGATGCAGCAAGACTGGCAAATAGCCCAAATGTGATGCCTGTGACAGCAGCCAAAATTTCACCTGTTATTTTACCCAAAACAGCAAATTCTGCTTCATCCCCAATGgtAATAGGTTCTCCTGGGCCACATCAAGTTATTACTGTCGGTGGAAGTCCAAGAACACCAACCATGATTGCTGCTCCAATTGTGGCACCGAATACAACAGCTTCATGGACGAGAGTAAACACAACTCCAAAtagtggaaagaaaagaagaatggATTGTTTGGAGAATAGTGACCTACTGGATAGTGCAGAAAGAAAACGAGGCAAAAGACTACCAAGTGCAGGTCGCTCAGGGGGTGATAAAAGTGGAAAAGGGCTGAGACATTTCTCCATGAAAGTGTGTGAGAAAGTTCAGCAGAAAAGAACAACATCCTACAATGAGGTTGCTGATGAATTGGTTCAGGAGTTCAGTGATCCTGACAAACATCTCTCACCCACGGACCAGGCTTATGACCAGAAGAACATCAGAAGAAGAGTATACGATGCATTGAATGTGCTGATGGCAATGAAcatcatttcaaaagaaaagaaggaaatcaaGTGGGTTGGTTTGCCCACAAACTCTGCACAGGAATGCCAACAATTAGAGCAAATTGCTTTTAAGAATCTTGTACAAAGGAACAAACAAGTGGAAAAGGATCAGGGTTCACCAGCTGCCAACACAGCTATCCATCTGCCTTTTATCATTGTGAACACAAGCAAGAAGACTGTCATTGACTGCAGCATATCAAATGACAAATTTGAGTATCTGTTCAACTTTGACAACACATTTGAAATCCATGATGACATTGAGGTTCTGAAACGAATGGGTATGTCATTCGGTTTGGAAAAGGGACAGTGTGAGGAGGCAAACCTGCGAACCTCAAGAACAATGGTCCCAAAAGCACTTGAGCCTTACGTCATGGATATGGCAAAAACTGGTCCAGTTGGACTTGCTGGAATACTTGGCAATCATGCAACACCCAAcaaatcCATGGGGTCTTCAGCTTCTCCGTTGGTTGCAGCCACTACGCGGATGTCACCTCTTCCTGCTCCAAACACACCTTCGTCACCACTGGCCACCCCCCTGCCTCAAGGACATGGAACTTCACCTGTACCTACGGCAACCAGCCATACACGGAATCGTACCTCAAGAACATCATCTATGGCTAGTGATAGTGGGCCCTCACACCGAACCGCGTCTCCATATTCCTTTCCCTCTTCTCCAGCTTCTGATGCTTCTTCAGAATTATCACAAGATGGATTTATGGACACAGACGACACCAACACACACCACTGATTTTATCATCAATTAAAGTTTTAGGAGTGTGCGTTTAGGCGATAGAGACAATTATGATATTACTTCACTTCCCAAGAGTgaagtattttggttttggaatGCAATAACTGAACTAAGTTTGTACATTTTACAGGCTTATACTATGAAATGCTTACTACCATTTGGTATTAGTTGATGCAAGGCTtttatagttttcttttttttttttt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q17QZ4	Transcription factor Dp-1 OS=Bos taurus OX=9913 GN=TFDP1 PE=2 SV=1
Q14186	Transcription factor Dp-1 OS=Homo sapiens OX=9606 GN=TFDP1 PE=1 SV=1
Q08639	Transcription factor Dp-1 OS=Mus musculus OX=10090 GN=Tfdp1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02319 all species →	E2F_TDP	E2F/DP family winged-helix DNA-binding domain	Domain	Interproscan
PF08781 all species →	DP	Transcription factor DP	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014889 all species →	Domain	Transcription factor DP, C-terminal	Interproscan
IPR038168 all species →	Homologous_superfamily	Transcription factor DP, C-terminal domain superfamily	Interproscan
IPR003316 all species →	Domain	E2F/DP family, winged-helix DNA-binding domain	Interproscan
IPR037241 all species →	Homologous_superfamily	E2F-DP heterodimerization region	Interproscan
IPR015648 all species →	Family	Transcription factor DP	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12548 all species →	TRANSCRIPTION FACTOR DP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04683	TFDP1; transcription factor Dp-1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.