Gene detail

Detailed information of RMX43036.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3257:715205...723800
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00001827

CCAACTTCTGAAGAAACATACATCCACGTGAAGAAATCGTTGATGAACGTTAACAAGTGTGTGTGAGATAAACTCGGTATTCTTTCCACGTCGTTGTGTTTTCCTTCATagagaatatttaaattgaGGATGTCACAGCTACCTCTTCcaaattttggaaactttCGGCCAGCTTTTAACACTGGTGGAAATCCAGGGTGGCCGATGCAAACTGCACCGTCGATTTTTGGAAGACCATATAGTTCTTCGATGAGTTTTTCACCCTTACTGTCTGTTCACTCTTCTCCTGGCTACCCTGGATGTCACATCACGCCTGGAATACGGCCGAACATACCTTTATTACGACCTCCCTTTAGCCACGTGGTTTCCCAGGAAAGGAACCCATCGTTCCAACAACCACAGGCTACCAATGTCCAGGGATCAGCAAGCAAAACAACAGAAGATAGGGAAAATGTCTCTTTGAGGAAAGAATTCAGTTGTGATGCTTGTCAGAaagatttttcaagtaaagaGACTCTGACTGCACATTTGGGATCCCACATTCAGtgTAGTTATGAAGGGTGCAAATTCAAGGCTGGAAGGAAAGTTGTAAAACTTCATTGGATACAGacTCACGAAACTGGCAGAATGAGGATTAAGTTGGATTCCCCAGAGGAAATAGCAAAGTggagagaagaaagaaaaagGAAGTATCCCACTCTGGCTAATGTGCagaagaaaatggaagaagaTGCGAAGAGGAAAGCATCAGGGcaagttttgaaaaccaaGAATTTTAGataccGCAGAGGCCAGGGTAGAGGAAGATCATTTCAGCGAGGTGGTCAGAACCATTTTAACAACAGACGTCATCCAAAGAGATTTCCAAAGGAACTGAATGGATTAGATCACACAGCTGGTGACCaagcaaaacaacaattcaGAGATGTGAACCAGGAGAAGGTAGCACAACCTTCTAATAGATTACACAATGTTGAAGATCCACTTTCATTGGTTCTTGATGACTGCTTTGAAAATGAGCCAGGAAATCAAATGCGGGAGAGTTTATCTCAAGAAAGGTTGTTGAAGGAAACATCAGATAACTCTGACCCTGCACTTTGTAGTGGAACATCTGGGATTTCAGCGCTAAGTTCACTCTGCACAGCATATGCCAGTGACTCAGAAGATGACAAACCATCAGagGAAATAAACAACATAAACACTGCCAGCCTTCcacaagcaacaaaaacagaagagGGAACTGCTGATAAATGTACATCTGCTGAtacaaatgtgaaaaaagaacaacgTAAAGCAACCAAAAGACGTCacagaaaatcaagaaaaatgttctcaaagGGAAACTCCAACTGTGTAGGAGTAAGGAAGTCAACTTTACTTGAAAAGCTGTTGGCACCAGATATTCGAcatgaaagaaatgtaattCTACAATGTTTGCGATACAttgtaaaaaaacatttttttggagTAGGAGATACAAGTGTTTCAGAGGATGTTgtcaataaatgaaattgtgatgagtgtaaaaataaattataattgaaAACATACTGGTACATGTACATACTTTTATGGactgtgtttttttgtaagATTGAAGAAACATCATTGATAATTAACTTAATCAATTGGTATGGCATTAACTTAACATGctaggtaaaaaaattattacaacttAAAAAGCAActtcagttaaaaatatttttatgcaCTGGTTACTGCTtagtaggaaaaaaattccaacacTTTGTATGGTGACCACACCTGTACACTGCTAATTTCCTCATTAAAGGAAGGAGTTCATGTGATAGATTGCTTGATCCTCTTCCAAATCAGTCTTGTATCCATATAGCACATGTGGAGAAATTGATGTTCCTTAACAGCACTtcatttaaacttaaaatgatACTGAGCAGTGCTCTTCGCTATTACTGCAACAGCTTGGGTGCTTAAGAAAATCACACAGTAACTGTACTTAACTCAAAAATTGTTGGCCTTCTACTTAAGGAGAGATCTGAGGAAACATGGTGTTTTTCGTAAGGCCTGAACCAAACTAattccttttgctttttgatatttctttagTTATATGACACTTGCGCATAGAATCCTTGGGAGAGCCACATCAAATAgtactacatgtacatttgcACTTGTAGCCTATTATTGTTGTCCTTTAGAATCACTAGTATTTTTCACGAGCTGAGAAGCTAAAGAAAGAACACATTTTCGTTTCAATGTCAAAGAACTCTGCATACAAAGCATGTGTCACCGCTTTGAGTAAGCAACCGGAGGACCGCTTATAACTCCTGAGCTCTGCTGCCCTTGTTTACCAAAACCCCCTCTGCCAGGGTCAAAATCAGTTCTATACTCATCTCGCACCTGACCCCCACTTTTCCCACGACCATATTGACGTCCTTCTATGAAACCTGCATCCCAGTCTGTTCGTATAATACGATCATCTAGTCTTGTTCCATTGATGTACCACATGGCATTTTGTGCATCCTCCCGTGTGATACTCTATGAAGCAAAATCCGCAAGGGgtctttttcactttgtccAATCCCATTATAATCCTTTTTAAGTCTCCTGCGCGAGCGAATAACTCATAAATCTGTTCTTCCGTAGTGTAAAAAGACAGATTCCCGACATACAATGTCGAACTGGTTTCTAGCAGATTTTCCAGCTCTCCGCGACTACCCTAAAATGTTGATCCCGATATGCACTAAgctccgccattttgtt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXX8	FMR1-interacting protein NUFIP1 OS=Mus musculus OX=10090 GN=Nufip1 PE=1 SV=1
Q9UHK0	FMR1-interacting protein NUFIP1 OS=Homo sapiens OX=9606 GN=NUFIP1 PE=1 SV=2
Q641W3	FMR1-interacting protein NUFIP1 OS=Rattus norvegicus OX=10116 GN=Nufip1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10453 all species →	NUFIP1	FMR1-interacting protein 1 (NUFIP1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019496 all species →	Domain	FMR1-interacting protein 1, conserved domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13309 all species →	NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000492 all species →	Biological Process	box C/D snoRNP assembly	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23308	NUFIP1; nuclear fragile X mental retardation-interacting protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.