Gene detail

Detailed information of RMX43201.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3251:381774...391580
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00009750

CTACGTGTATGTTTTGCAGTGGTTAATCCACGCGAGGCGTAAAGAAACGGAGAATTTCTCGTGAgtctttgcaaaaaaaaatgttttaaacgCAAATAATGGCAGCAGATAAGCGACTTGCTACAATTTCAGGCCATCTTCAGCCAAGGTTGTCTCACGGGGAAAAATATCGGCAATCTCTTTTGGACAATTTACGACAGGCAAGTATCTTTTAACTAcatgggtaaaatttccgcacagccccatactattgtaaaacaattctgttttcccaatggtaatgtattgtttttgtcattgttttctctatccaagaactgaatgcataatAGATGCTAAGATATCGCAGCATCAGGAAACTGACTCTACTTGACTCAGGAGAATTGCCATTCTTCCAACCACAAAGTGTAGAGGTTAGGGATAAAACCTGGAGGGTGGCACCTGTACCTTCCAGGTTGCAGTGCAGAGCGGTTGATATTGGAGACATCTCCCCTGCTGATACAGAAATGTTCATGAAGGCTTTAAATTCACCAGCTTGTGGCATTCAGaCTGATCTTGATGATGGCCATTGTCCCTCTTGGTCAAATCAGTTAAGAGGCCTTTATAACATCTACCAGTTTGTACGTGGTAACCTTAGGGgTGTTCCAGTGATGTCTGATGCTCCAGTAATCATGTTTCGACCAAGAGCATGGAACATGTTTGAATTTAATATGATGGTTGGAGGAAAGGTGGTGCCGGGTccattgtttgattttggtcTTCACATGTTCCACAACAGCAAACTTATGATGAAAGATGGGAACGGTCCTTTCTTTTACTTACCAAAGcttGAAGGATCCAATGAAGTGAAGTTGTGGAATGACATCTTTGTTTGGACTCAACAAAGGCTCGGATTACCGCAAGGATCTATCAAGGCCAGTGTTCTGATAGAGAGTatcttttgttcatttgaaCTTGATCAAATCCTGTTTGAGCTGCGGCATCACTCCGCTGGTCTGAACTGTGGCATGTGGGATTACTCCGCTTCTTTAATTAGCAACTTTGGACACAGGGCCGATTTCATTTTGCCTGATCGTAAGAAGTACGTATCTATGGACAAGCAGTACCTTAAAAGTTACATGCAGCTGGTTATTAAGACATGTCACGCACGAGGGTGTCACGCAACAGGGGGAATGGCGCCAGTTGTGTTACCGAAAGATAATCCGCATCTTCGACAGCAAATCACTAATAAAGTCTGCAGagCAAAACTGAACGAAATCAAAGCAGGAGCGGATGGATTTTTAGTGTTTGATCCTGATCTTGTGCAGCCTTTGATTCAGatgTGGAAGACAGAGGTAAATTCCAAGAACCAGCTTCATGTAAGCCGTTCTGAACTGATGGTCTCTAGAAACGACCTTCTACAACTACCAAGGGGTGGATTCACCTTACAAGGATTACAGGATAACATTACTGTCGGAATCCTGTTCATAGATGCTTGGTCAAGAGGCCAGGGTGTGTTTGTGCTCAATGGAGCTGTAGAAGACTCGGCCACAGCCGAAATTTCAAGGTCACAGATTTGGCAGGCAATTCGCCATCGGTGCAAACTGGAAGGAGATGGCCTCATAGTGACTAAAGCCCTCGTTTGTGGTGAAATTAAACGTATCACAGACGAGCTTGTCAGCCAGAAATCTTACAACTCTGTTGATACAGAAAGACTTACGATGTCTGCTAAGATATTAGAGGAGCTCGTATTGAAGCGAGACTTCCCTCAGTTTATAACCACATACCTCTATGAACATCAAGCGTTTAGGAACAGCTTGCAATTATAAGCAGTGAATTAAAGGCAACTGAAGACTGAAAAACGGCTCATTTCTTACGGTGGGCTGCAACGACGCAGGTTATTAAGATGAAAGGCCCAGATCCGGTTGTTGGAAAGGCGGtgactgggaaaaaaaaatgacacaaaagaaaaatccgtGGGAATTGAGAGAATGGGGGCCGAAACTCTCCCTTCCCTTGGTTTCAAACAGAACGGAAGCGAGTTATCAAgcagtgagttttttttcattctgccGTGCCTTTTAATAGAGtattatttaataatataCTATTTATGGATTTAATGatattgttttactttgagaaatttaacaaagagCAACTATTATGAAGATTAAAGATGTTATGGTATTGGTTTGTATTAATAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P95329	Malate synthase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=mls PE=3 SV=2
P28345	Malate synthase, glyoxysomal OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=acu-9 PE=3 SV=2
P28344	Malate synthase, glyoxysomal OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=acuE PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01274 all species →	MS_TIM-barrel	Malate synthase, TIM barrel domain	Domain	Interproscan
PF20659 all species →	MS_C	Malate synthase, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006252 all species →	Family	Malate synthase A	Interproscan
IPR046363 all species →	Homologous_superfamily	Malate synthase, N-terminal and TIM-barrel domains	Interproscan
IPR011076 all species →	Homologous_superfamily	Malate synthase superfamily	Interproscan
IPR044856 all species →	Homologous_superfamily	Malate synthase, C-terminal superfamily	Interproscan
IPR001465 all species →	Domain	Malate synthase, TIM barrel domain	Interproscan
IPR048355 all species →	Domain	Malate synthase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42902 all species →	MALATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004474 all species →	Molecular Function	malate synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006097 all species →	Biological Process	glyoxylate cycle	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX43201.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.