Gene detail

Detailed information of RMX43529.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3206:346275...357293
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00001897

ATGGCGATTTCAAATTTACGAGGATTCCTCAACAAAATAGCCGACGACATAGGATCTGAAGATCTAGCTAGTTTAAAGTACCTTTGTGGTGACAAATTGGCCAAAAGAAGGTTAGAAAATATATCCACACCGAGGGAACTGTTTGTAGCCATTGGTGAGATTACCGAAGGCGAAGAGCAGCAGCTCTCTTTTTTAAGACAACTCTTTCATAACGTTGGGAGATTGGATTTAAAGGCTAAAGTTCAACGTTTTCTTGACTCCAGAAAAGGTCATAAGAAGGATACCCATTTGAAATGGGCAAATGAAACCAGGACTGATGGACAATATGCTCTACAGAACAATTTCAACAACACAATGAATGGAAGAGCCTCATCAGCTGTTTATTCTGGTACAGGTCGAGGTTCAGTATCTACGTACCATCGAAATGAGATGCCAGGTCAAAAAAGAGGCTCTGTCTGTGGTTCACCCTATGTATCTTTGTCAGACATCGTTAATGTTGTGACAGGTGTAGATCAACATGCTCATCAGTATACTCAGCCAGATTATGGAGGTAATATTGTTGTGGAACAGCCAAAACCACCACCTGAAGGTCAGCCAAACCCCCTTGTGTACCAAACCCAACACAGTGTCCCATTTGGTCAACAAGAGCAACCTTCTGATAAGATAGAACATTGTGAAAACTCTCAAGATCCTGCTGAATTTCCTCCAAACAATCAGAGACCAACTGTGGATCTAGGATCTCTTATGACTTTACACTTGGGAAATTCAACTATCAGCAGCAATGCACAACCTGTAGGAGTAAATGACAAAGATCATCCAGAACAATGGAGCTTAACAGTACATCCAAATGATATCAATGTAGGAGTTTCCAGCACCTCAGGGTCAGGTAAATTGCCAGGCAACAATTCTGTCCAACTTGGAAGAAGAGATGAACTAGACAGTCCAAATCAAGGAGCTTCTGATATTCATTTTGGTGAAACTAATCCAGGGGATCACAAAGAACAAGGAAGTTCCACAATGCATGTAGCTGAAAATAGTTTTGGATCTTCTAACACCTCAGTATTAGCTAGACCGAGGCCAAGCAGCAATCAAGCCCAACTTGGAGGAAAGGATGACAAAGGCAATCCAAATCAAGGACTTTCAAGTACAAATTGTGTTGAAATTCATCCAGATCAAATCACAGGAAGTTCATCTTCAGAGAAAGTTCCAGTTGAAAGAGCTGTGTCAGTCAATTATGATACCGAAGTTGCAGCACATTTACATCAGAAATGCCCAGTTGAGATGAGCTATAACTGTTTTAAAAAATATTTCAGTAGTAAAAACAGTTTACTGGGTAAAGGAGGCTTTGGGAAGGTTTATGAAGGTACCAAGAAATTTCATGGTCAGACTGTTGTCATCAAAGAAGAGCACCAGACTTACTCTGGACTTCCCCAAGGTGGAGCACAATTAAAGAGGGAAAAAAAAGTTGGTTATATTAAACATCCCAATTTGATGCCCCTTTATGCTTTTTGTGAGGAGGAAGGCAAACCACGCTGTCTTATGTATCCTAAAATGCACACTGATTTACATAAGGCTCTACGAAAGCGCTCAAAAGGCCAAAAATTACCTTTTGGCATTAGACTAAAGATTGCCCTTCATACTGCCAGGGGACTGCATTATTTGCATACAGAAGTGAAAAACGAGAGATGTGTAAGGCAGGAAATTGTACACATGGATGTAAAGCCAGGGAATATATTTCTTGATGAACAGTTTAATGCACGTCTGGGAGATGCTGGAATGGCTCAGGAGTTACCTATGGATTACTCTTATGCATCTCTCAGTCAGATTCGTGGAACAACTGGATACCTTGATGCATTTCTTAAAGAAAGACGCTTTAAACCTGTTAATGACATTTTCTCATTTGGAATAGTGCTCCTGGAACTTCTCACTCAAAAGAGAGCTGTTGAAAACAATGTGACCTTGTATGACAAACTTTATAAAGAAGGAGTGTTTTCAGATGTAAAAAACTTAATTGGTTCAGCACAGAAGGATGTGTGGCCTGAAGGTGGAGATGAAAAAGGTTTCACTGAAGAATTCGCTAATCTTGCAATAAACTGTGTAAAACCACCAGAGGACAGAGAAAAACTGCCAAATGTGTGCAAGAGACTAGAGGACTTACTGGACAAGAAAGGAGTCAGTAAATATTCCAAAGAAGGAGCCCATTGTGTTTCTTGTCTACTAAATCATTCATCAAAGTATTTGGGAGTGAGGTCAAATGGCTGCAGCACTGTTCAAGAGTGTGACTATTTTTGTTCTACATGTTTGATGCAAGCACGCCGAAACCCTCTGGAATGTCCATACCATGGGCGTGCTGAACCTCCAATTGGAGGATCGGATACATATGCAGTTCTAGTTTGTGGAAATGACCCAGACTCACCAAAGGCAGCTACAATCTTTCTACATGATTTAATAGCCTTTAAAAGTGTTTTAACTGATTGCCGCATTGTTGGAGTTAGGAAAGATCACATATTTACCATTACACCGAATACACCAGGAGGTGCATCACAATCCAACCTAGTTAAAAAAGTTCTACAAGACCTTAAACAGAAGCTTCAAGGAAAGACGAATGTGTTTGTTTATTTTTATTTTTCTGGTCACAATGATCATAATGGCAACTTGCTATGTTCTTCTGAAAATGATTGCCTAATGGAGGATGATTTGAAAAAGCACCTAAACCTTCTCAGTCCCCATGTCCGTGAATTCTTGATTATTTTGGATTGCTGCTTTGCTGATGGCAATATTGCTTCAGATCATCTTAAGGATGAAACCTATTTAGTTCAAAAATCACCTAACCCAGTGAATGTGGAGGCCCCACCACATCCTCTTGAGTCACTGTGCAGTAAACTACGAAAGGCAAGTGGCGATGAGAACTGTTGTGCTACTGACAAGAGTCCTATTTCAAATACAGATTTAGACATAGCAGCAACTGATTTTAGTGCTGTGGATGGGAATGTGATCCACAAAGCTCCAGTTACACCATCTTTTAACATACGTCAGTGGTCTTCTTCATCATCTCAACAATCTTCCTATGCTTTGGCCAGAACAGGAAGCTTTCTGACACGCTTCATAACTTGTGGGTTGCGTGGTGCACATGATTGTAAAGTTACAAACTGTAAATTTTGTGGTGCATTCAAAGCTCAAGCCAAATCATTGGGTTATATTACTGCTTCAAACCTGGAGGATTTCTTCTCAAAGCACGTGGAAGAAGCTGCCGCTAAAGCTGGTGGACAAGGGCAGTGTCCACGCATACGAACACTTCACTCAAAGGATACAATACTGGCTTTTTACAATGAAGAACCATTGTGTGATGAGATGTTGTTCAAATCAGCTTCTGGGTATACAGAGCGAATTGTAGTTAAGGAGTTCCCTCTTCACCTTTTTGATTTTCAATGCATGGTGTTTGACAAGGTTAAAGATCACCTCCCCACTTGTGCTGAGGTAAAGCACCTTCAGATTCTCTGTGATGATGAGGAAATTGGGAGCACATCTTATGTAGACCTCAAAGATTACCTTAGACAGGGGTATGATGTCAGATGTCAGTTAAGGCCATGTTATAGTATTGTAAGAGGTCCAGTGGTTGTTGAGATCCAAACTTACATGAATCAGGTTCTGACTCTTTTGAACTCTCTTCAGTTGTCAAGAAATGAACAACAGGATTGTGTTACCTTTGGGATGAAAACTAGTGAGAAATCTCTCAATGCTGAGGATGTCAGAGAATGCTGCGATGAAGACCCCAACCTCAGTGGTCTTAAGGAAAGCTCTGTGGAAAAATCAATTGCAGTGATTCTGACAGAGGCATCTGTGCACCAAGGAGTGTTAGAAATAAAGGTTTCAGACCAAAGCATGGACTGCTGTTTTACTCAGCAGGAT

Transcript

rna-pdam_00001897

GAAGGGTACGGAAGATGGCGATTTCAAATTTACGAGGATTCCTCAACAAAATAGCCGACGACATAGGATCTGAAGATCTAGCTAGTTTAAAGTACCTTTGTGGTGACAAATTGGCCAAAAGAAGGTTAGAAAATATATCCACACCGAGGGAACTGTTTGTAGCCATTGGTGAGATTACCGAAGGCGAAGAGCAGCAGCTCTCTTTTTTAAGACAACTCTTTCATAACGTTGGGAGATTGGATTTAAAGGCTAAAGTTCAACGTTTTCTTGACTCCAGAAAAGgtcaTAAGAAGGATACCCATTTGAAATGGGcaaaTGAAACCAGGACTGATGGACAATATGCTCTACAGAACAATTTCAACAACACAATGAATGGAAGAGCCTCATCAGCTGTTTATTCTGGTACAGGTCGAGGTTCAGTATCTACGTACCATCGAAATGAGATGCCAGGTCAAAAAAGAGGCTCTGTCTGTGGTTCACCCTATGTATCTTTGTCAGACATCGTTAATGTTGTGACAGGTGTAGATCAACATGCTCATCAGTATACTCAGCCAGATTATGGAGGTAATATTGTTGTGGAACAGCCAAAACCACCACCTGAAGGTCAGCCAAACCCCCTTGTGTACCAAACCCAACACAGTGTCCCATTTGGTCAACAAGAGCAACCTTCTGATAAGATAGAACATTGTGAAAACTCTCAAGATCCTGCTGAATTTCCTCCAAACAATCAGAGACCAACTGTGGATCTAGGATCTCTTATGACTTTACACTTGGGAAATTCAACTATCAGCAGCAATGCACAACCTGTAGGAGTAAATGACAAAGATCATCCAGAACAATGGAGCTTAACAGTACATCCAAATGATATCAATGTAGGAGTTTCCAGCACCTCAGGGTCAGGTAAATTGCCAGGCAACAATTCTGTCCAACTTGGAAGAAGAGATGAACTAGACAGTCCAAATCAAGGAGCTTCTGATATTCATTTTGGTGAAACTAATCCAGGGGATCACAAAGAACAAGGAAGTTCCACAATGCATGTAGCTGAAAATAGTTTTGGATCTTCTAACACCTCAGTATTAGCTAGACCGAGGCCAAGCAGCAATCAAGCCCAACTTGGAGGAAAGGATGACAAAGGCAATCCAAATCAAGGACTTTCAAGTACAAATTGTGTTGAAATTCATCCAGATCAAATCACAGGAAGTTCATCTTCAGAGAAAGTTCCAGTTGAAAGAGCTGTGTCAGTCAATTATGATACCGAAGTTGCAGCACATTTACATCAGAAATGCCCAGTTGAGATGAGCTataactgttttaaaaaatatttcagtagTAAAAACAGTTTACTGGGTAAAGGAGGCTTTGGGAAGGTTTATGAAGGTACCAAGAAATTTCATGGTCAGACTGTTGTCATCAAAGAAGAGCACCAGACTTACTCTGGACTTCCCCAAGGTGGAGCACAATTAAAGAGGgaaaaaaaagttggttaTATTAAACATCCCAATTTGATGCCCCTTTATGCTTTTTGTGAGGAGGAAGGCAAACCACGCTGTCTTATGTATCCTAAAATGCACACTGATTTACATAAGGCTCTACGAAAGCGCTCAAAAGGccaaaaattaccttttggcATTAGACTAAAGATTGCCCTTCATACTGCCAGGGGACTGCATTATTTGCATACAGAAGTGAAAAACGAGAGATGTGTAAGgCAGGAAATTGTACACATGGATGTAAAGCCAGGGAATATATTTCTTGATGAACAGTTTAATGCACGTCTGGGAGATGCTGGAATGGCTCAGGAGTTACCTATGGATTACTCTTATGCATCTCTCAGTCAGATTCGTGGAACAACTGGATACCTTGATGCATTTCTTAAAGAAAGACGCTTTAAACCTGTTAATGACATTTTCTCATTTGGAATAGtgcTCCTGGAACTTCTCACTCAAAAGAGAGCTGTTGAAAACAATGTGACCTTGTATGACAAACTTTATAAAGAAGGAGTGTTTTCAGATGTAAAAAACTTAATTGGTTCAGCACAGAagGATGTGTGGCCTGAAGGTGGAGATGAAAAAGGTTTCACTGAAGAATTCGCTAATCTTGCAATAAACTGTGTAAAACCACCAGAGGACAGAGAAAAACTGCCAAATGTGTGCAAGAGACTAGAGGACTTACTGGACAAGAAAGGAGTCAGTAAATATTCCAAAGAAGGAGCCCATTGTGTTTCTTGTCTACTAAATCATTCATCAAAGTATTTGGGAGTGAGGTCAAATGGCTGCAGCACTGTTCAAGAGTGTGACTATTTTTGTTCTACATGTTTGATGCAAGCACGCCGAAACCCTCTGGAATGTCCATACCATGGGCGTGCTGAACCTCCAATTGGAGGATCGGATACATATGCAGTTCTAGTTTGTGGAAATGACCCAGACTCACCAAAGGCAGCTACAATCTTTCTACATGATTTAATAGCctttaaaagtgttttaactGATTGCCGCATTGTTGGAGTTAGGAAAGATCACATATTTACCATTACACCGAATACACCAGGAGGTGCATCACAATCCAACCTAGTTAAAAAAGTTCTACAAGACCTTAAACAGAAGCTTCAAGGAAAGACGaatgtgtttgtttatttttatttttctggtcACAATGATCATAATGGCAACTTGCTATGTTCTTCTGAAAATGATTGCCTAATGGAGGATGATTTGAAAAAGCACCTAAACCTTCTCAGTCCCCATGTCCGTGAATTCTTGATTATTTTGGATTGCTGCTTTGCTGATGGCAATATTGCTTCAGATCATCTTAAGGATGAAACCTATTTAGTTCAAAAATCACCTAACCCAGTGAATGTGGAGGCCCCACCACATCCTCTTGAGTCACTGTGCAGTAAACTACGAAAGGCAAGTGGCGATGAGAACTGTTGTGCTACTGACAAGAGTCCTATTTCAAATACAGATTTAGACATAGCAGCAACTGATTTTAGTGCTGTGGATGGGAATGTGATCCACAAAGCTCCAGTTACACCATCTTTTAACATACGTCAGTGGTCTTCTTCATCATCTCAACAATCTTCCTATGCTTTGGCCAGAACAGGAAGCTTTCTGACACGCTTCATAACTTGTGGGTTGCGTGGTGCACATGATTGTAAAGTTACAAACTGTAAATTTTGTGGTGCATTCAAAGCTCAAGCCAAATCATTGGGTTATATTACTGCTTCAAACCTGGAGGATTTCTTCTCAAAGCACGTGGAAGAAGCTGCCGCTAAAGCTGGTGGACAAGGGCAGTGTCCACGCATACGAACACTTCACTCAAAGGATACAATACTGGCTTTTTACAATGAAGAACCATTGTGTGATGAGATGTTGTTCAAATCAGCTTCTGGGTATACAGAGCGAATTGTAGTTAAGGAGTTCCCTCTTCAcctttttgattttcaatgcATGGTGTTTGACAAGGTTAAagATCACCTCCCCACTTGTGCTGAGGTAAAGCACCTTCAGATTCTCTGTGATGATGAGGAAATTGGGAGCACATCTTATGTAGACCTCAAAGATTACCTTAGACAGGGGTATGATGTCAGATGTCAGTTAAGGCCATGTTATAGTATTGTAAGAGGTCCAGTGGTTGTTGAGATCCAAACTTACATGAATCAGGTTCTGACTCTTTTGAACTCTCTTCAGTTGTCAAGAAATGAACAACAGGATTGTGTTACCTTTGGGATGAAAACTAGTGAGAAATCTCTCAATGCTGAGGATGTCAGAGAATGCTGCGATGAAGACCCCAACCTCAGTGGTCTTAAGGAAAGCTCTGTGGAAAAATCAATTGCAGTGATTCTGACAGAGGCATCTGTGCACCAAGGAGTGTTAGAAATAAAGGTTTCAGACCAAAGCATGGACTGCTGTTTTACTCAGCAGGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q84M95	Probable serine/threonine-protein kinase PBL28 OS=Arabidopsis thaliana OX=3702 GN=PBL28 PE=2 SV=1
Q9SY91	Probable serine/threonine-protein kinase PBL15 OS=Arabidopsis thaliana OX=3702 GN=PBL15 PE=1 SV=1
Q8GUQ5	Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum OX=4081 GN=CURL3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF01335 all species →	DED	Death effector domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR27001 all species →	OS01G0253100 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX43529.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.