Gene detail

Detailed information of RMX43558.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3192:138925...167732
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00010837

ATGGTGTACGAGGTTCTTTTTGTCGCTTTCACATTTATAGGAATCAACACAAGCAGTTCGCTTAGCGGTAGTTATCCCAAGTTGTCCAGTCCGTCCTGCAAGAAATGCCCTGCAGGATCTTTTACAGTCTGCTCTCTAAATGAAGAGTCACGATGTGTAAAGTGCGCGGAAGGAACGTACAACGATAAGCCTTCTCGCCGAGGAACATGCAAGCGCTGCACCAGATGTGGTCACAATGAATACAAGTCCCATCCCTGTAATTCAACGTCGAATACCGTTTGTGTAAAATGCAGGGAATGTCCTCCAGGCTTCGGTGTGTTCAGGCCTTGTGAAAAGACTAGAGACACTGATTGTGTTAAGTGTCCAGTTCCCGAGAGCTTCCTCAGCAGTTATGGTAAAGTTGAATGCGGAATTAAAGTTGATTCTTTTCGCAACAATATCAGGGAGAAAGAAAAGCTCAAGGATAGTTTCTTTGTTCTAAGAGAGGAGGTTAATCCCTGGGAAAATGGCAGGAAGAACCCCAAGTCTCAGCATCGACTTGCATTCGTCGAGAAACACGTCAACGCTAACATCTTTGTATCTGCGTTACCTTCTGTTAATCCAACGCCTTCAAGTGTTTTCTTCTCTACGAAGCCCACTAGTGCTGTAGACCAAGGAACAATTTTAGTTAGTTTTGCTTTTTATAGCTCACCATCGTCATCACGGAGCGTCGAGAAATCAATTACTTTTCCCGCGGGAGAAATCATCGACCCTACACTCCGACCGGATATTCCTTCAAAACGTCGACCTCCATCTCGCCCGACAGAAAAATCCGTTTCCTCCTTTAAAACACCGACAAATTTTGAAATTCAAGGAGATGATGGGAGCTATCCGAGTCGTACACCGCGAAACACCCGTCAAAACGGAACAGATGCAACGACAACGCGTGTAGCATCACCTGTTTCACCTTCTAAGAGCGTCAAAGCCATGTACATCAACCATAGAATGGATGAAGAACTTAGCACAGAATCCTATCGACATCGTACTAACAGGTGGAGTCTAGCGTCAGAAAAAAACTGCCAATCCAAAGCATGGTTTACTGTGAAAAAGAACTCCATTCACATCAAGACAAGAAAATTTTCCATTTGGAGTGTGTTCGCCTGTGGCGGAACAAAGAGGAAGAGAGCGACTGTTTACTTCAGCAGACATAACCCGAGAAGTGATCACATTTACCTACGCTTCTACATTTACAGTGATAATGAGGATTCAAAGAAGTTGTCCAGTCTATCCTGCAAGGAATGCCCTGCAGGATCTTTTACAGTCTGCTCTCCTAATGAAGAGTCACGATGTGTTAAGTGCGCTGAAGGAACATACAACGATAGGCCTTCTCGCCGAGGAACATGCAAGCGCTGCACCAGATGTGGTTACAATGAATACGAGTTTCAAACCTGTAATTCAACGTCGAATACTATTTGTGTAAAATGCAGCAAATGTCCTCCAGGCTTCGGCCTTGTGGAAAGACGAGAGACACTGGTTGTGTTAAGTGTCCAGTTTCTGAGAGCTTGCTCAGAAGTTATGTTGAATGCGGAATTAAAGCACACTTTGCTTCCCCTTCAAAATAATCTTGTGGTCGCAGATGTTCATCATATCTCTCAATCTGATGGAACTGACTCAAGGTCACCTGGATACATAACAGAAGCAGAGGCCACGTTCGACAGCTCTGGTGGACAACTTATCGCACCGGACTCTGATGTCGTTATCACTGTAGGGAGTGGAGCAGTTCAAGAGGGTATCAAGCGGCGTTTTTTCTTCCGCGTGCTCAAGGATGACTCCACATTGTTGCAGGATATCCCGGATGTGCCCGAAGGAACGCTAATTTCCCCCGTTATCGAATGTGGACCTCACGGCGTTACCTTGCTCAAGCCGGTGGAAATCAGTGTTCCACACGATCTGTGCTTGGACGAGGTCAGGAAGGATTTGATAAGGGTTTACAGATGGGAGCCATCTTCTAAAGGGCCGCCACAATGGGAGAAAATTCCCTCAGCATCAGAAAAAAACTGCCAATCCAAAGCATGGTTTACAGTGAAAAAGAACTCCATCCTCATCAAGACTAAAAAATTTTCCATTTGGAGCGTGTTCGCCTGTGGCGGAACAAAGAGGAAGAGAGCGACTGTTTACTTCAGCAGACATAACCCGAGAAGTGATCACATTTACCTGCGCTTCTACATTTACAGTGATAATGAGGATTCAAAGAAGCGAGTGAAAGCGCAGGAGAAAGAGTCTTTTCCTGGCTCGAGATCATCAAAGGAGAAACCGTTTAAGATGTACGACAACGAAAAGGATGTGATCGTGAAGCTCACTGATCTTGAAGACGGTTGGGAACTGGATAAGACTCCCAGTCTACAGAAATACAACTACGACACTGCGTATCGCAATGGATTCCGTGCCAAAGATGCCTGTGATTTTGCAGTTAGACCGGCACGTCCAGGAGTGAAAGAATTTTCCTGCAACCTTAAATTTAATCAAGAAGACAGCCCAACAGAGTATTCAATTTATCTTTACCCGGGGTATTCACCGCGACAGACTGGTCGAAATATTTTTGTCCAAAATTCTGAGAGTGGCACTTTTTCCAACGGTCGTAAGGTTGCGGGCGCAGTTTCTATCACGATGCCACCAGAGGAAAACGAAATCAATGGAAGCCAAGAAACGATAACTTCAATGGATTCCTCGGCCAATCAAACAGAATCTTTCAGCTACGATATATCCTCGCTGGGCAGTGACAGACAACCAGTAACAGAAGACCATTTCCACTGCATACGCGAGGAAATCGGTGCTAAATGGAAGAATGTCCTGCGAAAACTGGGTCTCAGGGAACCAGAAATCGAAAATATTTGCGTGAATCATAAGGAATATGGGGTGGAGGAGAGTTTTTTCCAAGGTCTGCTGAAGTGGAAAAAACGTTTCGGTGAGGAAGCTACTACCGAAAAACTGTGTGACGTTCTTCGTGAGGCACGCTGCACGGAAGCTTTGAAAAAACCAGCACGTCCAGGAGTCAAAGAATTTTCCTGCAACCTTAAATTTAATCAAGAAGACAGCCCGACAGAGTATTCAATTTATCTTTACCCGGGGTATTCACCGCGACAGATATACGACTACGACACTGCATATCGCAATGGATTTCGTGTCAAAGACGCCTGTGATTTTGCAGTTAGACCAGCACGCCCAGGAGTGAAAGAATTTTCCTGCAACCTTAAATTTAACCAAGAAGACAGCCCAACAGAGTATTCAATTTATCTTTACCCGGGGTATTCACCGCGACAGACAAGTCGAAAGATTTTTGTTCAAAATTCTGAGAGTGGCACATCTTCCAACGGTTGTGAGTTTGCGGGTGCAGTTTCTATCACAATGCCACCAGAGGAGAACGAAACCAATGAAAGCCAAGAAACGATAACCTCAATGGATTCCTTGGCGGTTAATCAAACAGAATCTTTTAGCTGCGATATATCCTCGCTGGGCAGTGACAGACAACCAGCAACAGAAGACCATTTCCACTGCATACGCGAGGAAATCGGTGCTAAATGGAAGGACGTTCTGCGAAAACTGGGTCTCAAGGAGTCGGAGATCGAAAATATTTGCATGGATCACATGCGTGAACCATATGGGGTGAAAGAGGCTTTTTACCAAGGTCTACTGAGGTGGAAAAGAAGTTTCGGCGAGGAAGCTACTACCAAAAAACTGTGTGATGTTCTTCGTGAGGCACGCTGCACGGAAGCTTTGAAAAAGTTTAGAGAATTAAGTTGCAGAGTGTGA

Transcript

rna-pdam_00010837

GCACTCGATCGCGCAGCCGGCAGGCGAAGAGGTAACGGGGATCAAGTTCGCCGACTCGTTAAGACATATTGCGCGTCGTGCAGTCTCTACAATGGTGTACGAGGTTCTTTTTGTCGCTTTCACATTTATAGGAATCAACACAAGCAGTTCGCTTAGCGGTAGTTATCCCAAGTTGTCCAGTCCGTCCTGCAAGAAATGCCCTGCAGGATCTTTTACAGTCTGCTCTCTAAATGAAGAGTCACGATGTGTAAAGTGCGCGGAAGGAACGTACAACGATAAGCCTTCTCGCCGAGGAACATGCAAGCGCTGCACCAGATGTGGTCACAATGAATACAAGTCCCATCCCTGTAATTCAACGTCGAATACCGTTTGTGTAAAATGCAGGGAATGTCCTCCAGGCTTCGGTGTGTTCAGGCCTTGTGAAAAGACTAGAGACACTGATTGTGTTAAGTGTCCAGTTCCCGAGAGCTTCCTCAGCAGTTATGGTAAAGTTGAATGCGGAATTAAAGtTGATTCTTTTCGCAACAATATCagggagaaagaaaagctcaaggatagtttctttgttctaaGAGAGGAGGTTAATCCCTGGGAAAATGGCAGGAAGAACCCCAAGTCTCAGCATCGACTTGCATTCGTCGAGAAACACGTCAACGCTAACATCTTTGTATCTGCGTTACCTTCTGTTAATCCAACGCCTTCAAGTGTTTTCTTCTCTACGAAGCCCACTAGTGCTGTAGACCAAGGAACAATTTTagttagttttgctttttatagCTCACCATCGTCATCACGGAGCGTCGAGAAATCAATTACTTTTCCCGCGGGAGAAATCATCGACCCTACACTCCGACCGGATATTCCTTCAAAACGTCGACCTCCATCTCGCCCGACAGAAAAATCCGTTTCCTCCTTTAAAACAccgacaaattttgaaattcaaggaGATGATGGGAGCTATCCGAGTCGTACACCGCGAAACACCCGTCAAAACGGAACAGATGCAACGACAACGCGTGTAGCATCACCTGTTTCACCTTCTAAGAGCGTCAAAGCCATGTACATCAACCATAGAATGGATGAAGAACTTAGCACAGAATCCTATCGACATCGTACTAACAGGTGGAGTCTAGCGTCAGAAAAAAACTGCCAATCCAAAGCATGGTTTACTGTGAAAAAGAACTCCATTCACATcaagacaagaaaattttccatttggaGTGTGTTCGCCTGTGGCGGAACAAAGAGGAAGAGAGCGACTGTTTACTTCAGCAGACATAACCCGAGAAGTGATCACATTTACCTACGCTTCTACATTTACAGTGATAATGAGGATTCAAAGAAGTTGTCCAGTCTATCCTGCAAGGAATGCCCTGCAGGATCTTTTACAGTCTGCTCTCCTAATGAAGAGTCACGATGTGTTAAGTGCGCTGAAGGAACATACAACGATAGGCCTTCTCGCCGAGGAACATGCAAGCGCTGCACCAGATGTGGTTACAATGAATACGAGTTTCAAACCTGTAATTCAACGTCGAATACTATTTGTGTAAAATGCAGCAAATGTCCTCCAGGCTTCGGCCTTGTGGAAAGACGAGAGACACTGGTTGTGTTAAGTGTCCAGTTTCTGAGAGCTTGCTCAGAAGTTATGTTGAATGCGGAATTAAAGCACACTTTGCTTCCCCTTCAAAATAATCTTGTGGTCGCAGATGTTCATCATATCTCTCAATCTGATGGAACTGACTCAAGGTCACCTGGATACATAACAGAAGCAGAGGCCACGTTCGACAGCTCTGGTGGACAACTTATCGCACCGGACTCTGATGTCGTTATCACTGTAGGGAGTGGAGCAGTTCAAGAGGGTATCAAGCGGCGTTTTTTCTTCCGCGTGCTCAAGGATGACTCCACATTGTTGCAGGATATCCCGGATGTGCCCGAAGGAACGCTAATTTCCCCCGTTATCGAATGTGGACCTCACGGCGTTACCTTGCTCAAGCCGGTGGAAATCAGTGTTCCACACGATCTGTGCTTGGACGAGGTCAGGAAGGATTTGATAAGGGTTTACAGATGGGAGCCATCTTCTAAAGGGCCGCCACAATGGGAGAAAATTCCCTCAgcatcagaaaaaaactgcCAATCCAAAGCATGGTTTACAGTGAAAAAGAACTCCATCCTCATCAAgactaaaaaattttccatttggaGCGTGTTCGCCTGTGGCGGAACAAAGAGGAAGAGAGCGACTGTTTACTTCAGCAGACATAACCCGAGAAGTGATCACATTTACCTGCGCTTCTACATTTACAGTGATAATGAGGATTCAAAGAAGCGAGTGAAAGCGCAGGAGAAAGAGTCTTTTCCTGGCTCGAGATCATCAAAGGAGAAACCGTTTAAGATGTACGACAACGAAAAGGATGTGATCGTGAAGCTCACTGATCTTGAAGACGGTTGGGAACTGGATAAGACTCCCAGTCTACAGAAATACAACTACGACACTGCGTATCGCAATGGATTCCGTGCCAAAGATGCCTGTGATTTTGCAGTTAGACCGGCACGTCCAGGAGTGAAAGAATTTTCCTGCAACCTTAAATTTAATCAAGAAGACAGCCCAACAGAGTATTCAATTTATCTTTACCCGGGGTATTCACCGCGACAGACTGgtcgaaatatttttgtccaaaaTTCTGAGAGTGGCACTTTTTCCAACGGTCGTAAGGTTGCGGGCGCAGTTTCTATCACGATGCCACCAGAGGAAAACGAAATCAATGGAAGCCAAGAAACGATAACTTCAATGGATTCCTCGGCCAATCAAACAGAATCTTTCAGCTACGATATATCCTCGCTGGGCAGTGACAGACAACCAGTAACAGAAGACCATTTCCACTGCATACGCGAGGAAATCGGTGCTAAATGGAAGAATGTCCTGCGAAAACTGGGTCTCAGGGAACCAGAAATCGAAAATATTTGCGTGAATCATAAGGAATATGGGGTGGAGGAGAGTTTTTTCCAAGGTCTGCTGAAGTGGAAAAAACGTTTCGGTGAGGAAGCTACTACCGAAAAACTGTGTGACGTTCTTCGTGAGGCACGCTGCACGGAAGCTTTGAAAAAACCAGCACGTCCAGGAGTCAAAGAATTTTCCTGCAACCTTAAATTTAATCAAGAAGACAGCCCGACAGAGTATTCAATTTATCTTTACCCGGGGTATTCACCGCGACAGATATACGACTACGACACTGCATATCGCAATGGATTTCGTGTCAAAGACGCCTGTGATTTTGCAGTTAGACCAGCACGCCCAGGAGTGAAAGAATTTTCCTGCAACCTTAAATTTAACCAAGAAGACAGCCCAACAGAGTATTCAATTTATCTTTACCCGGGGTATTCACCGCGACAGACAAGTCGAAagatttttgttcaaaattctGAGAGTGGCACATCTTCCAACGGTTGTGAGTTTGCGGGTGCAGTTTCTATCACAATGCCACCAGAGGAGAACGAAACCAATGAAAGCCAAGAAACGATAACCTCAATGGATTCCTTGGCGGTTAATCAAACAGAATCTTTTAGCTGCGATATATCCTCGCTGGGCAGTGACAGACAACCAGCAACAGAAGACCATTTCCACTGCATACGCGAGGAAATCGGTGCTAAATGGAAGGACGTTCTGCGAAAACTGGGTCTCAAGGAGTCGGAGATCGAAAATATTTGCATGGATCACATGCGTGAACCATATGGGGTGAAAGAGGCTTTTTACCAAGGTCTACTGAGGTGGAAAAGAAGTTTCGGCGAGGAAGCTACTACCAAAAAACTGTGTGATGTTCTTCGTGAGGCACGCTGCACGgaagctttgaaaaagtttagaGAATTAAGTTGCAGAGTGTGACGCTGCTACTCCAAATCAAGAGAGGGCGGCAATTATTTGAACCAGATTACCACAATTACatgttggcttgttagctgTTTTAAACCGGTTCAGATAAATTCGAATCTTGTCCTATCGGatcataaaattgttttcgcCAGGCCCGTGTTTTGTGCCCGgattttttagaaatattttcgtataagtttctttcgttttcGGTTAGTTCTGCTAGATTTCTTATATATGGAATTCACATTTCTCCCttttcaccctaacatcagtatgcatattctccatactgttctcta

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX43558.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.