Gene detail

Detailed information of RMX43765.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3146:111705...121782
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00019503

GCATGATCGAAAAAAAGATGGCGAAATTACGGAACGTTGTGTGTGGCTTGTTGCAAATAAGGAGGCATTACGCCCGgcTTTCGGAGGTTGGACGTTTCCAAGAGCCAAAAACCAGCGGAAAATATGAACCAGGACAGCTCTTTCTGCACAGATTATTTGGTTACAGAGGGGTGATTCTATTCACTTGGTCAGCAAGAGTTTATGACAGAGATAAAGAAacaagggaaaatgaaaaAGCTCAACCAGAAATTGTGACCTTCCTTGGGTATGAAAGTGACAATGCTCTTTATACAATTCCAGgtCTGGACTACATTTCCCAGGAGGATATCCTTCCCTATATGGTTTCCGATGCATTTTCCCGTCCAATCCACCATGAACTGTTTGATCGCTTTTTGTATCCTGAACCTGGAAGAGAACCGTCTTTTGCTGCACGAGAAGCACTCCAATCCTGGCAGGAGAAGAATCATAAGTGGTTAGAATTAACAGATGTACACAGAGAGTCAACAAACAATGTAAGGATTACCGTAATGCCATTCTACATGGGAATAAAGaACACGCTTCCAACGCCGGATTATTGGTGGCGTTATTGTATTAGAATTGAAAATCTTGGACAAGAGACTGTACAACTTCGTGAGAGACATTGGAGAATATTTAGTCTGGCAGGCACATTAGAGACTGTAAGGGGGAGGGGCGTGGCTGGACAGGAGCCTATTCTTTCGCCGCAACAGCCAGCTTTCCAGTACAGCAGTCACATATCATTACAGGCACCCAGTGGAAATATGTGGGGTAAATATCGCTTCGAACGCTCAGACGGAAGTACGTTTGAAACTCCCATTCCTCCGTTTGCACTGGATAGCAGAGAAGAGGATACGCCTGATTCTCCGGGAgcttcttgaaaatgaatttagaaACATGATGCCCAGCTTAGCAGCCTTAATGActgtttcttttcagtcaAGCGGGAATAGCGAGGCCGCGTGAGAGAATGGGGCGAAAGcgttgggaaaaaaaagaagagcgGAAGAGAGGGATGGGGAAACAAAGGTCCAATTGCATTGTCTGCCGCAGGACTTCAATAGCGCAACTAAGTAATTGGAGGAAATAGTGGTGCAGAGCGAAACAAAGAAGGGAAGTTTGGGGCAGATCGCGTGAACCCGACCTAGGCTCCGTGCGTTTCTTGCTCTGTGGTAGTATCTCGCGCGCTCCGTATACAAACTTCAGTACTGGAACAGCCTGAAAATATCTGTGCTCGTCTGTAggatcttctttttcttcccgTGTCTTTCTTCCCGTTCCTCACCCCACTTACCGCTCCaattgatttttcctttttttctcttagaaaAGTTTTAGCTgatattttgctgtttttttttttcgctctttgCTTGCTATTTGCTCACTTTTCGTTTGCCGTTTGCACTCTCCTAACTGTTTTTTGCTCACTTTTCGCACTGACTCCCGCTTGGGTAAAACGAAATGGAAAGACTGCGCGCGAACTAGATACTTTTCTACGCGTAAAAGTAAAAGTGAAACAACTGGTGTTTACTTCGTAACCAAACTAACGTATTCAATATTTCAAGAACTAGTCGCCATGGAATTCCAGAACACAGAATAGTGGTCGTGACGTAACAAACTCAGTGGGGTGTCTAAACATTTGGTATTATCATTgcatctggaaaaaaatgtgaatattGCTTATTGAGTGAAAGAAGCTGCATGTTGAAGGTTAAAAGCTGTTGAcatcagtttaaattttttgtattaattatGAAACAATTCCAATGAAGTTTTCGTGGCCTGACAGACATGTTTTGTGATTATGATGCCAATGACATGCGCAGCAATTGTCGCAATTGGGAGAAGCGTTGCGTGACACTCTTAGGCGATGCGTGGTATAATAATCGAGGCATCGTCGATTCTTCGTGTGGGGGACATGTACAGTCGTGGACAGCGTATTGCCCTCCttaaagcacttaggaaggCACTCAAAGAACGAAACCTGTCATTTTGGTATCAATGAAATGAGGCAAACATTTCCAAACATGTATATTATTGTGCAATAGATGATAAGAGACTAGGCGAGTGTATCGCTATACGTGTGGTTACTTTAGTGGAATCATGGCGGTGAATACTTTGAACGAACGCCTTTTGATCTTGTTAGTTTTTTGGTGCCCGACTTTTCCGTTTCTCTCTGATAAATGCGAGGAatagaatttcttcttttgaattcttttattcaatttttcatttttcctggCGCTTTGGataggaaaagaaaggagGGAAGATATTACTTGATTTAGAAAGGACCTGTGATCTGTACCATTCAACATTCGAAAGAGACAAGAATTTCTCTTTCcggatgttttgttttcgccGTTCTCAGTCCATGATCAAATCATTAAGTTCCAAAGTAGTAAAAGCGAGTACTACTTTCATCCGAAACTGCATTAGAACTGCCcctttaaaattcatttgaagtgaaaagaaaagaaaatagaatttttgtattgtaaaaCTGACACAGATCTTGTTGGTCGATGAAATCGTATTTATCTTccaatgtttttcaaagaagatCTTACTGCCTGTCATTATTTAATCATGAATTGGTGTATTTCTGATCAACCAGGCTACGAAGATATGAAAGACTGATATTCTGAAAATAGGCGAAATGGTGTCATCCTGACGTTTAATAGATAGCTACcttaatttttatgtaaagaaaaattaaacatgaagCCTCTTTGTAGTGATTTAGTTTCGTCTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04379 all species →	DUF525	ApaG domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007474 all species →	Domain	ApaG domain	Interproscan
IPR036623 all species →	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan
IPR011722 all species →	Domain	Hemimethylated DNA-binding domain	Interproscan
IPR036767 all species →	Homologous_superfamily	ApaG domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14289 all species →	F-BOX ONLY PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042645 all species →	Cellular Component	mitochondrial nucleoid	Interproscan
GO:0070987 all species →	Biological Process	error-free translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17809	POLDIP2; polymerase delta-interacting protein 2	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.