Gene detail

Detailed information of RMX43977.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3092:163984...181585
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00017581

ATGGCGAAGAGTCTGTTTAATAAGGCTGTAGAAGACGCAGCATTAAGTATTTCTTTGCGTCAAGATGGATCCAGGAGTTTTAAAGAATTTGATAAGCCAGACAGGGGGCGTTCTTTTCGAGGACAACCAAGAGGTAGAAGCAGGGGCAGAGGGAGAGGAAGAGGTCGTAGTAGTAGCCACCATAGAAGCGATCCTCATCCTAGGTCGCACTTAGCTGGTGATGATGATGATGACATAGACATGGATGAAGGAAGCCAAAGATCTCATTCAAGATACAACCCTTATTCCAGAAGACCTCCATCTCGTCGTGGTGACAGAGGAAGTAGTAGAGGTGATATAAAGTCTAGACTAGGGAGAGTCCCTGATGGAGCCACAGGAAGTCAAGGAAATAAGTCTGATTGGTATAAAGTTGTGATACCACAGGGGAAAAAACACGACAAAGATTGGCTTATTAAGAGACTGCAGAATACATGTGAAGAGGCCTTCCAACCAGTTAGTTTCCATTCCTTCAAGGGAGAGTCTTCAGCCTTCTTTGTTGAGGGAAGTAAAGTTGCGGAAGCATTGAAAAGAGTTAGTCATAAAATAACTGTGAAGGATGGAACAAAGCTGATAGTAAGTGTGCGTCCCAGTGCTCCACCCCAAAACCAAACCAGTAATTTTCCTGTTCGTGAAGTTCATGATGGTAGCAGCAGAGGAAGTGATTCATTAGAGGATGGCACAAAACAAGTATTGAAGGATTGTCTCAGTAAACGTTATGATATTACAACAAAAGCACTTGACCTCTCTGATTTGTTTCACGATGAAGTGCTGAAATTAAATAATATACAAGGAATACTGGCAAGATATTGGCTGGCATCAGGAATTGTGAAAATTATTGGAGAGAACTGCCCTGAGGTTCAGTCACTTGACCTAAGTAACAATCGACTGAAGAGCTTGGATGGCTTTAAGGACCTTGGGAAGGAAACATCAAACTTAAAGCACATCAAGATCTCCAATAATCAACTGAGAGCTGTAGAAGAACTGGACAAGATAAAGTCCTTGAGTCAGCTTCAAACCATTTCACTTGATGGAAATCCTCTTTGTGATATATTTCAAGACAAACAAAATTCATATATCAGTGCTATCAGAAGCAGGTTTCCTAAAGTAACCACTCTGGATGGTCATGAACTTCCTCCACCAATAGGATTTGACCTTCCCTCTGAAGAATCTCTCCCTGCTTCGAAGGAAAGTTTTTTTGGTGATCTGGCAGTTAAAGAAATGGTGCTAAAATTCATAGAGCAATATTTTAAGATTTATGACACAGACAACAGACAAGGCCTTCTTCAAGCTTACCATGATCAGGCAATATTTTCCATGTGTGTCAATACAGAAGCATTAGGGAAGGATCGCGGTGGTCAAAGGGCCCCTTCACTTGGTGACTACTTGAAGTACAGCCGAAACTTGAAAAGAGTCGCTGACCCAGAGCGTCGAAGCAGTTTTTTGAAGCACTCAAAACTCTCTGTTGTTGCATTTTTGAATGAGCTGCCCAGCACAAAGCATGATTTGTCAAGTTTCACTGTCGATGTTAGTCTGGCCTTGCCTTCCTGCTTGTCCTTTGCGGTCAGAGGATTGTTCTTAGAGAACTCTAAAACATTGAGGTCTTTTACAAGAGTATTTCTCGCTGTTCCTGCTGCTGGTGGAAGCGCGCTGAGTATAATTAATGATGAGCTGCATATTAGCCACGCTTCGCCTTCTCAAGTGCAGGGTGCGGCTGTTGAAAGTACGATTGCCACCAACAGCACTGAAACGTTACAAGTCAGTTCAGCTGTTCTTGGTTTGACATCAGCAACTACACAGCAGCAGCAGCAGATGATTCTCCAGTTTGCAGAGCGGTCGACAATGAACGTTGAGTGGTCATACAAGTGCCTGTCTGAAAATAATTGGAACTTCGAGAAAGCCGCAATGGCGTTTTCTTCATTAAAGGATAGTGGTAGGATTCCGCCTGAAGCTTTTGTAAAATAA

Transcript

rna-pdam_00017581

AAAGAAGGCTAGGTTACTATTTCTACGGCAGAGAAGGGTGATATGGAAGATAAATGTTGAAGAGCGGCAAGGAAAATGGCGAAGAGTCTGTTTAATAAGGCTGTAGAAGACGCAGCATTAAGTATTTCTTTGCGTCAAGATGGATCCAGGAGTTTTAAAGaatttgataagCCAGACAGGGGGCGTTCTTTTCGAGGACAACCAAGAGGTAGAAGCAGGGGCAGAGGGAGAGGAAGAGGTCGTAGTAGTAGCCACCATAGAAGCGATCCTCATCCTAGGTCGCACTTAgctggtgatgatgatgatgacataGACATGGATGAAGGAAGCCAAAGATCTCATTCAAGATAcAACCCTTATTCCAGAAGACCTCCATCTCGTCGTGGTGACAGAGGAAGTAGTAGAGGTGATATAAAGTCTAGACTAGGGAGAGTCCCTGATGGAGCCACAGGAAGTCAAGGAAATAAGTCTGATTGGTATAAAGTTGTGATACCACAGGGGAAAAAACACGACAAAGATTGGCTTATTAAGAGACTGCAGAATACATGTGAAGAGGCCTTCCAACCAGTTAGTTTCCATTCCTTCAAGGGAGAGTCTTCAGCCTTCTTTGTTGAGGGAAGTAAAGTTGCGGAAGCATTGAAAAGAGTTAGTCATAAAATAACTGTGAAGGATGGAACAAAGCTGATAGTAAGTGTGCGTCCCAGTGCTCCACCCCAAAACCAAACCAGTAATTTTCCTGTTCGTGAAGTTCATGATGGTAGCAGCAGAGGAAGTGATTCATTAGAGGATGGCACAAAACAAGTATTGAAGGATTGTCTCAGTAAACGTTATGATATTACAACAAAAGCACTTGACCTCTCTGATTTGTTTCACGATGAAGTGctgaaattaaataatataCAAGGAATACTGGCAAGATATTGGCTGGCATCAGgaattgtgaaaattattgGAGAGAACTGCCCTGAGGTTCAGTCACTTGACCTAAGTAACAATCGACTGAAGAGCTTGGATGGCTTTAAGGACCTTGGGAAGGAAACATCAAACTTAAAGCACATCAAGATCTCCAATAATCAActGAGAGCTGTAGAAGAACTGGACAAGATAAAGTCCTTGAGTCAGCTTCAAACCATTTCACTTGATGGAAATCCTCTTTGTGATATATttcaagacaaacaaaattcatatATCAGTGCTATCAGAAGCAGGTTTCCTAAAGTAACCACTCTGGATGGTCATGAACTTCCTCCACCAATAGGATTTGACCTTCCCTCTGAAGAATCTCTCCCTGCTTCGAAGgaaagtttttttggtGATCTGGCAGTTAAAGAAATGGTGCTAAAATTCATAGAGCAatattttaagatttatgaCACAGACAACAGACAAGGCCTTCTTCAAGCTTACCATGATCAGGCAATATTTTCCATGTGTGTCAATACAGAAGCATTAGGGAAGGATCGCGGTGGTCAAAGGGCCCCTTCACTTGGTGACTACTTGAAGTACAGCCGAAACTTGAAAAGAGTCGCTGACCCAGAGCGTCGAAGCAGTTTTTTGAAGCACTCAAAACTCTCTGTTGTTGCATTTTTGAATGAGCTGCCCAGCACAAAGCATGATTTGTCAAGTTTCACTGTCGATGTTAGTCTGGCCTTGCCTTCCTGCTTGTCCTTTGCGGTCAGAGGATTGTTCTTAGAGAACTCTAAAACATTGAGGTCTTTTACAAGAGTATTTCTCGCTGTTCCTGCTGCTGGTGGAAGCGCgCTGAGTATAATTAATGATGAGCTGCATATTAGCCACGCTTCGCCTTCTCAAGTGCAGGGTGCGGCTGTTGAAAGTACGATTGCCACCAACAGCACTGAAACGTTACAAGTCAGTTCAGCTGTTCTTGGTTTGACATCAGCAACTacacagcagcagcagcagatGATTCTCCAGTTTGCAGAGCGGTCGACAATGAACGTTGAGTGGTCATACAAGTGCCTGTCTGAAAATAATTGGAACTTCGAGAAAGCCGCAATGGCGTTTTCTTCATTAAAGGATAGTGGTAGGATTCCGCCTGaagcttttgtaaaataactcCAGGCAAAATTCAAAGCTGGATttagatttttcatttcatccaACAGTTCCTTTGCCAACGTCCATGATATTGTTTACATCTCTCTGAACTGCATGCTTTAACTTTTGTTGCAGTTGTTGTTGCTATTTTTAAGCTATAAATTCGCGGTCGTTGAATTTTCTACAGAATatccttgtaaataatttcctCAGCAAATCAGTATTAGCCTAGTAATAGCGTTCAGAACAGcgtattttatttgttagcATTTAGAAATAGACTTTTTAGAACTTTTACGACATCTGCAACTGATTTTTCCAGGTATATATTGTTAACCAGAGCTTCACAAGGACCAGTCACCGCTGTATACACCTCTTGATGTTATTGTGAAGAAATGTTGACAGgattaaagaataaattgaTAACGAAGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02136 all species →	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan
PF03943 all species →	TAP_C	TAP C-terminal domain	Domain	Interproscan
PF09162 all species →	Tap-RNA_bind	Tap, RNA-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032710 all species →	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR002075 all species →	Domain	Nuclear transport factor 2 domain	Interproscan
IPR005637 all species →	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR030217 all species →	Family	Nuclear RNA export factor	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR018222 all species →	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR015245 all species →	Domain	Nuclear RNA export factor Tap, RNA-binding domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662 all species →	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051028 all species →	Biological Process	mRNA transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14284	NXF, TAP, MEX67; nuclear RNA export factor	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.