Gene detail

Detailed information of RMX44003.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3081:289082...309509
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00012973

ATGCCATTGGAAGGAACAAACCCTCTCATAAATGCCCGCGACAGATTATTCCGCGCCCTGTTTTTCAAAATGGCGCTTATGTATGCTCGTTCGTTTCCTCCGCCTGTTCGCCTTCTTTTAGAGATGGGAGTGCTCATGAAGGCTATCACTTGTTTTGTAATCCTGGGCTACATACACAATGCATTTTCAAGGACTCCTATAAACTGTTTGGACCAGATCAAGGACCAGTGGCCCAGAGATGGAGTACTTAGAGTAGTCATATCACGAAATGCAGCTGTCAGCAGATTATCTGAAAATGATACTACAAGAACTAATTTCACTAATTCTGCTAACATAACAGAAAATATCCTTGTAAATATTAGTAATGTGGGAGCCAATCTTAAATCAGGAGAGAATTATTCATCATCTGTGGAAAATGTGTATGATCATTCATCTAATAATGTGCCACAGAATAACCATCTTCCTGTAAAGGATACTGTTGTGCCAAGTGCTTTTGAACTGTTAGCACCAATCAAGATCGAAGAGGAAAGAAAAGAAGAATATGCTGTTGAATATGCCTTGGAGTATGGTTTTCTTAGACTTTCCTCAGAATCCAGAAAGAAGCTGGGAATTCCTGTTTTGGTGGTTGAACTTGACCCTGCAGTGGAGCAGTGTTTTGGAGATAGTTTGAGTCGTTTCTTGTTAGATGAATTCCTTGGATATGATGATGTGTTAATGTCAAGTGTCAAAAGACTGGCTGAGTATGAAGACAACAAAGGTTATCTACGTAACGTTGTGACTGGGGATCATTTTCGCTTTGTCAGTATGTGGATGGCACGCACATCATACTTAGTGGCTCTTGTTCTTATGTTTATTTTTACTATTTCAATTTCAATGCTTTTGAGGTATTGCCATCATCAAATCTTTGTTTTCATTGGAATGGAAGCTATCATGTCAGAGTTTTTCAATGACACTACAACAAGCTTTTACATCATTCTGATAGTATGGACCGCTGATCAATATGATGCCATTTGTTGTCATACTCAACAGAGTAAAAAGTTCTGGCTAAGGTTCTTCTATTTGTATCATTTTGCATTTTATGCATATCATTACCGTTTTAATGGTCAGTATAGTGGACTTGCCCTCGTTACTTCATGGTTATTTATTCAGCATTCCATGCTATTTTTCTTCCATCACTATGAATTACCAGTAATCTTGAGTCATCAGGCAGATCCTGAAGAGGATCTGTTGGCAGATCCTATTGCTGCCCTCACTGACGAGGTGAATATGCCTGCTATAGATGATATTGCCAATCATCCTGCACTGGAGAATAATCCACACCCTGATTTACCAATTAATGATGATGAAAGAGATATTTCTCAGAGTATTAACAGCAGAGAAACAAGTCACTCAACTACTGAAGCAGGAACTGTTCCAGTCAATTCATCATTAACAAGAAGACACTGGGTGGGAGCAGGCAATATGGGGGATGATGTTGATAGTTATCAGGGACATCACACGTGGCCACAGCAGCACCAAGGAAATACAGGAACGACAACATCCCACAGCTCAACAAAGAAAAAATTCTGTGTCCCCATGAGGAATCCAATTCAAGACCTTCAGACTCTGAGCTCCCATGCTCTACCACTGAGCCACAGAGACTCTACGGTGTTAGAGTGTCGAGTTTGTGAAGATGTATTCACCCTTCAAGGTGACAAAGTTCCAAGGTTATTATTGTGTGGACACACTGTCTGTCATGACTGTTTGACTCGGCTTCCAGTCCTTGGGCACAAACTTCACTGTCCCTTTGACAGACAGTCAACTGAACTGGGTGACTCTGGAGTCTGGGGTTTAAAGAAAAATTTTGCATTGTTGGAACTGTTAGAACGTCTTCAAGTGCTACAAGAACCATCAGTAATAAGTGACAGTGAGAGCAGAGATGACACTGTTAGATGTGATGAAAATGAAGAGCACATTGCCAACATATACTGTACTGTTTGTGAAACTAACTTGTGTGGTGAATGTGCAGAGGGTACTCACTCCACCAAAACTCTAGTGAAGCACAGAAGAATTCCCATTTCTGAGAAACCCAAAGAAAAGCCAAAATGTCTACAACACTCAGCTCATGTCATAGAATTCACATGTTTAGAGGAAGGATGTCAAGATAACTCACTGATGTGCTTTGTGTGTCGAGATTATGGTAAACATCAGGGACATAAGCATACTCTACTTGAGAACGAAGCAGAGAACATGCGTGCCTCTGTGACCAAAGTCATACAACATGTTAGAACCTTTACGGATGAAGTTGATGGGTCAGCTGCAAGACTTTCTTCAGTTATTGAAGCAATTGAAGGTGGGGTGTTGATGCAAGAGGATGAACGAGGAAATCTCGTTGCACAACATGTTGCTGGAACTGCAGAAGATGCAAGAAGTAAAGTGCGAGCATATTTTGATGATCTACGAGAAACAGTCAACCGACAAGAGGAGGCTGGACTTGCTGTTGTTAATAATTATGTGAGAGAGAAACTACTGTCACTCAGACAACAACAGGAGGACATGGCTGTTTTGATGTCGCAAGTAACATCTGTCTGTGTAGAGTGTGACAGAGCACTCAAGAGGAGTGATGCTGAGGTAATAGAAGCCAGAAACAGTATCCATAGTCTTTTGGAAACAGTACAAGACCAGCAGGAGCAGTTCACCAACATTGCTAGCCTCTGTGACACAGATGCTGCCATCCCTGTTGCCTTTACAAAAGACAATAGGGTCCACATAGGCCCAAAAATGGAAATGAGAGTAGTTGCACTAGGACTTGATGGAGCAGGAAAGACTTCAATTTTATTTAAAATGAAGCATGATGAGTTTGTCTCGCCCATAACAACAATTGGATTCAATGTGGAAACTGTTGAACACCGCAGTTTAAAGTTTACTCTTTGGGATGTTGGTGGTCTGCAGAAACTCCGTCCACTTTGGAGACATTATTACCTTAACACACAAGCTGTGATCTTTGTGATTGACAGTAACAATTTAGAGCGTATTGAAGAGGCTCATGAGGAACTTGCAAAATTAATGGCAGAGAAAAGACTGAAAGATGCTCTGTTGTTGATATATGCTAACAAACAGGACTTGCCCAGTGCTCTCAGTGTTGATGATCTCACTGAAAAGCTTGCTCTCCATAAGCTGTGTTGTGGAAGGAGCTGGAACATATTTGCCTCTGATGCACATTCTGGCAAGGGCCTACATGAAGGCTTAGACTGGCTTGCAAGACAACTTATGTCTGAGTTTGCACAATGA

Transcript

rna-pdam_00012973

ATGCCATTGGAAGGAACAAACCCTCTCATAAATGCCCGCGACAGATTATTCCGCGccctgtttttcaaaatggcgctTATGTATGCTCGTTCGTTTCCTCCGCCTGTTCGCCTTCTTTTAGAGATGGGAGTGCTCATGAAGgcTATCACTTGTTTTGTAATCCTGGGCTACATACACAATGCATTTTCAAGGACTCCTATAAACTGTTTGGACCAGATCAAGGACCAGTGGCCCAGAGATGGAGTACTTAGAGTAGTCATATCACGAAATGCAGCTGTCAGCAGATTATCTGAAAATGATACTACAAGAACTAATTTCACTAATTCTGCTAACATAACAGAAAATATCCTTGTAAATATTAGTAATGTGGGAGCCAATCTTAAATCAGGAGAGAATTATTCATCATCTGTGGAAAATGTGTATGATCATTCATCTAATAATGTGCCACAGAATAACCATCTTCCTGTAAAGGATACTGTTGTGCCAAGTGCTTTTGAACTGTTAGCACCAATCAAGATCGAAGaggaaagaaaagaagaatatgCTGTTGAATATGCCTTGGAGTATGGTTTTCTTAGACTTTCCTCAGAATCCAGAAAGAAGCTGGGAATTCCTGTTTTGGTGGTTGAACTTGACCCTGCAGTGGAGCAGTGTTTTGGAGATAGTTTGAGTCGTTTCTTGTTAGATGAATTCCTTGGATATGATGATGTGTTAATGTCAAGTGTCAAAAGACTGGCTGAGTATGAAGACAACAAAGGTTATCTACGTAACGTTGTGACTGGGGATCATTTTCGCTTTGTCAGTATGTGGATGGCACGCACATCATACTTAGTGGCTCTTGTtcttatgtttatttttactatttcaatttcaatgcTTTTGAGGTATTGCCATCatcaaatctttgttttcattgGAATGGAAGCTATCATGTCAGAGTTTTTCAATGACACTACAACAAGCTTTTACATCATTCTGATAGTATGGACCGCTGATCAATATGATGCCATTTGTTGTCATACTCAACAGAGTAAAAAGTTCTGGCTAAGGTTCTTCTATTTGtatcattttgcattttatgcaTATCATTACCGTTTTAATGGTCAGTATAGTGGACTTGCCCTCGTTACTTCATGGTTATTTATTCAGCATTCCAtgctatttttcttccatcacTATGAATTACCAGTAATCTTGAGTCATCAGGCAGATCCTGAAGAGGATCTGTTGGCAGATCCTATTGCTGCCCTCACTGACGAGGTGAATATGCCTGCTATAGATGATATTGCCAATCATCCTGCACTGGAGAATAATCCACACCCTGATTTACCAATTAATGATGATGAAAGAGATATTTCTCAGAGTATTAACAGCAGAGAAACAAGTCACTCAACTACTGAAGcAGGAACTGTTCCAGTCAATTCATCATTAACAAGAAGACACTGGGTGGGAGCAGGCAATATGGGGGATGATGTTGATAGTTATCAGGGACATCACACGTGGCCACAGCAGCACCAAGGAAATACAGGAACGACAACATCCCACAGCTcaacaaagaaaaaattctgtgtccccatgaggaatccaATTCAAGACCTTCAGACTCTGAGCTCccatgctctaccactgagccacagagactctacgGTGTTAGAGTGTCGAGTTTGTGAAGATGTATTCACCCTTCAAGGTGACAAAGTTCCAAGGTTATTATTGTGTGGACACACTGTCTGTCATGACTGTTTGACTCGGCTTCCAGTCCTTGGGCACAAACTTCACTGTCCCTTTGACAGACAGTCAACTGAACTGGGTGACTCTGGAGTCTGgggtttaaagaaaaattttgcattgttGGAACTGTTAGAACGTCTTCAAGTGCTACAAGAACCATCAGTAATAAGTGACAGTGAGAGCAGAGATGACACTGTTAGatgtgatgaaaatgaagagcaCATTGCCAACATATACTGTACTGTTTGTGAAACTAACTTGTGTGGTGAATGTGCAGAGGGTACTCACTCCACCAAAACTCTAGTGAAGCACAGAAGAATTCCCATTTCTGAGAAACCCAAAGAAAAGCCAAAATGTCTACAACACTCAGCTCATGTCATAGAATTCACATGTTTAGAGGAAGGATGTCAAGATAACTCACTGATGTGCTTTGTGTGTCGAGATTATGGTAAACATCAGGGACATAAGCATACTCTACTTGAGAACGAAGCAGAGAACATGCGTGCCTCTGTGACCAAAGTCATACAACATGTTAGAACCTTTACGGATGAAGTTGATGGGTCAGCTGCAAGACTTTCTTCAGTTATTGAAGCAATTGAAGGTGGGGTGTTGATGCAAGAGGATGAACGAGGAAATCTCGTTGCACAACATGTTGCTGGAACTGCAGAAGATGCAAGAAGTAAAGTGCGAGCATATTTTGATGATCTACGAGAAACAGTCAACCGACAAGAGGAGGCTGGACTTGCTGTTGTTAATAATTATGTGAGAGAGAAACTACTGTCACTCAGACAACAACAGGAGGACATGGCTGTTTTGATGTCGCAAGTAACATCTGTCTGTGTAGAGTGTGACAGAGCACTCAAGAGGAGTGATGCTGAGGTAATAGAAGCCAGAAACAGTATCCATAGTCTTTTGGAAACAGTACAAGACCAGCAGGAGCAGTTCACCAACATTGCTAGCCTCTGTGACACAGATGCTGCCATCCCTGTTGCCTTTACAAAAGACAATAGGGTCCACATAGGcccaaaaatggaaatgagaGTAGTTGCACTAGGACTTGATGGAGCAGGAAAgacttcaattttatttaaaatgaagcATGATGAGTTTGTCTCGCCCATAACAACAATtgGATTCAATGTGGAAACTGTTGAACACCGCAGTTTAAAGTTTACTCTTTGGGATGTTGGTGGTCTGCAGAAACTCCGTCCACTTTGGAGACATTATTACCTTAACACACAAGCTGTGATCTTTGTGATTGACAGTAACAATTTAGAGCGTATTGAAGAGGCTCATGAGGAACTTGCAAAATTAATGGCAGAGAAAAGACTGAAAGATGCTCTGTTGTTGATATATGCTAACAAACAGGACTTGCCCAGTGCTCTCAGTGTTGATGATCTCACTGAAAAGCTTGCTCTCCATAAGCTGTGTTGTGGAAGGAGCTGGAACATATTTGCCTCTGATGCACATTCTGGCAAGGGCCTACATGAAGGCTTAGACTGGCTTGCAAGACAACTTATGTCTGAGTTTGCACAATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006461 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00025 all species →	Arf	ADP-ribosylation factor family	Domain	Interproscan
PF09746 all species →	Membralin	Tumour-associated protein	Family	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR006689 all species →	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR003649 all species →	Domain	B-box, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019144 all species →	Family	Membralin	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21650 all species →	MEMBRALIN/KINETOCHORE PROTEIN NUF2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0034976 all species →	Biological Process	response to endoplasmic reticulum stress	Interproscan
GO:1904294 all species →	Biological Process	positive regulation of ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX44003.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.