Gene detail

Detailed information of RMX44014.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3081:95402...107359
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00012966

aattcCAATCACCCGCCATCTTGTTCCTGTGACTGAGCAACGCTCGAGAATATGACCAGTGTCGCAGCTTTGGCTGGGATACCCTCTGCTACAGGAACGAAGCGTACAGCTGAAGATATACTGAGCATAGCAGgccttatgGGGGACCAGAAAAAGGCAAGATTTGAAAATGCTCCATCAAAAGTGATCCATGTTAGAAATGTACCAGTTGATGCTAATGATACAGAGCTTCTTGCACTTGGACTGGAATTTGGACGAGTAAAAAATGtccttttattaaaaactaaacGACAGGGTTTTATTGAAATGGAGGACAAACAAACAGCCGCAAACTTTCTCACATATTACTCACATATATCACCAACCATCAGAGGTCAAGTGGTATATGTGCAGTATTCAAATCATCCTGAGTTGAAGACAGAACCCTCTCAGCATTCGTCTGGGACTTCCAAAATCATTGCAGCTGGTGGAGACTATCCTTACTCAGCAGATGGACAGGGTGCTCTTGCTGCTGCTGCAGCCAAAGTTGTGAcaggaaataaaagcaatgtTATCAGAGCAGTGATTGACAAGTTGTGGTATCCAATAACTGTTGAAGTCCTCTACAAGatattttcaagtttaggGACTATTCTTAGGATTGTGACCTTTACAAAAAATGGTCAGTTTCAGGCGCTAATAGAATTCACCACTGTTACTGAAGCAGAGCTGGCAAAAGTTACACTTGAtggacaaaatatttacaatggcTGCTGCACCTTGCATCTtgaattctccaaattgaccACGTTGACAGTGAAATACAACAATGATAAGAGCAAaGATTACACCAGACCTGATCTTCCCTCAGGTCCCAATGACAGCCCTTTTAGTGGAGCTGATCTTGCTGGTTTACTTACTGGTGGTGCAGCTGGAAGTGCTAGTCTGATGGGAGCTCCAGCTCTTTTGAGTCTTCTCCCTCAAGGAGGATTACTCCCAGCAaGTTTCTTTGGTGCCACAGGCGGCAGAGGAGGATTGAACATGGGAGGGTCTCCTGTTGTCCTTGTTAGCAATTTAAATGAAGAGAAGATAAACTGTGACATGCTTTTCACTCTGTTTGGTAATTATGGTGACGTAATCCGTGTAAAGATTCTGTTTAACAAGAAGGACACAGCTCTAATCCAGTTTAACGATCCTCAACAAGCTCAGACAGCAATCAGAAATCTGAGTGGAGTCTCTATgtatggaaaagaaatcaaagtgaCTTTGTCAAAACACACCTATGTTTCCATGCCAAAGGATGGAGATgaaaataatCTAACAAAAGATTTCACCAATTCGCCCTTACATCGCTTCAAGAAACCAGGATCCAAAAACTTCCAGAACATTTTCCCTCCTATCAGAACACTTCATGTATCAAATATACCTGACACAGCTACAGAAGAAGAATTAATAGATGCTTTCTCTGTTTCTGGAACAGTAACAGAATTCCGCTTCTTTGCGAAAGACCGAAAAATGGCCCTGGTGACTATGACAACAATAGAAGAGGCAATTGATGCTCTTATTAAAATGCACAACTACAAAATCACAGAATCTAATCACCTCAGAGTATCTTTTGCTAAAACAAGATCATCTAACTGAGCATCTGAATCTAACCTGTGATCACacattctttttttggtgGGAACTCAAATTTTGGCAGTGCAAAAAAAGCTTGTCAGATTACAGGTTGCTCCATATCATGCCTAAGTCATCTCAAACTCAAGTCAGTTGACCTTTATGTACATGCAGCTGTACGTGCACACGTTCCAATgcaattaacattttaaaagtaacatATTGCCTAATCAAAGTGAAGGAttccttttttgaaattttcgttCTCTAgtatgaaaacatcaaaatttcctaCATTTTAGGATCTGTTTCATTAGCATTGTAGATAAACCATCACTTAAATAgggaaattcaaaatattggAATTATATACTTgggaattttctgttttcttttttcattttgatttatgctttgcttttttttggaTTTGATGCAcaaattacttaatttttgttaggTGAAAAGGATTAAAGGCAAGGGTGGCctctgtattttaaaaatttgaaatatgtgCTTTGGGTGCTAGACATCTTATTGCCTCTACATCTACTGTTCTTGttagatttaatttaatatttgttgATCCTTGTATTCAGATCTcctaagggttttttttcagttcatctATTTTACTTTAATAGCTGAtctttcttggaaatttagggcttaaaaagttcttttcaaagttaatgAATCATCTCTTTGATTTGTGGTTTTTAAGCaagttaataattaaaaccAATAGGTTTTCTTCTATTACTTTggaagtaaattcaaattggGGTTTTATTTGTTGTCACATCTGGTTTGACAATTTGAATTGACCAAAGGTTTTGCCCTTCAATATGGTTACAgatttgattgatttgttgaaaaaataaggTTGATcaatcagttttatttgtaaaacTTATAGGGGTGCTAGATTCATgtatattcaatttttcactTCAGCTCTTAAGGAGGGttcttaaattcaatttgtaatgtttaacactttttttcctttgattcatAGGGATTTGTTGTGATTCTTTGTCGGTATGGGGGGAAGGGTCTTGTTAAGATAGCTTTAGACATGTTATTCTTGTTCCTGTTTGTAGCAGCTTGTAAAATGAGAGagattgagaaaaataaaaattaatttctta

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13893 all species →	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF11835 all species →	RRM_8	RRM-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR021790 all species →	Domain	PTBP1-like, RNA recognition motif 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592 all species →	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX44014.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.