Gene detail

Detailed information of RMX44169.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3058:504237...513405
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002514

TTATTCGTTTCTAGGCAACACCTTATCTTGTTCGGTGGAAAAACTACTGCATTCTGTGTTTGTCGGAAAGTACCGTTGTTTTATAGCAAAAATCCGAGTTGTTCATCATGCctcccaaaaagaaaagtgggaagaagaaggggaaaaagaaatctgcCAAGTCCAAGACACCTACAATAGTAGATGGGATTAGCACAGAAGAGATGAGCAAAGAACAGTTGGAAGAACACATTGTGAGATTACGAGAGGAATTAGATAGGGAACGTGAAGAACGCAATTACTTTCAACTGGAACGAGATAAAGTGAATACTTTTTGGGAAATCACAAAACGACAGCTTGAGGAAAGGAAGGCAGAGCTGCGTAACAAAGATAGAGAAATGGAGGAGGCAGAGGAAAGACACCAAGtggaaattaaagtttacaaaCAGAAAGTGAAACATTTATTGTATGAACACCAGAACAACATTGCAGAACTTAAAGCTGAGAGTGCTGTGGCGTTGAAGTTAGCACAAGACGACCACAAAGGCAATGAGCAAGACTTAAGAAAGGACAAGAGATCTCTCAAGGTGGAATTAAAAGAACAAGAACTTTCTCATGAAGATGTTGTTAAGAATCTCAAGAAGgGTCACGATGAACATGTAACAAAACTCAGGCAGGATTTTGAGAGACAAGTTAAAGAAATTGAGTCAAAGtatgacaagaaaatgaaggCACTTAGAGAGGAACTTGAGCTGAGgaggaaaactgaaatacatGAAATTGAAGAGcgCAAGAATGGTCAAATCAACACCTTGATGAAGAATCATGAGAAAGCTTTCAGTGACATCAAGAATTACTACAATGACATAACACTTAATAATCTGGCTCTTATAAATTCCCTCAAGGAACAAGTTGaggagatgaaaaagaaggaagagagaatggagaaacaaatgaatgaaattatgGCAGAGAATAAGAGATTAACAGAACCATTACAGAAAGCCAGAGAGGAGGTGGAAGAACTTAGAAAACAGCTTGCAAACtatgaaaaagacaaagcGTCATTGGCTAGTGCTAAGGCACGGCTTAAAGTTCAAGAAGAAGAACTAAGGAGTTTACATTGGGAACACGAAGTTCTCCAACAGCGCTTTAGTCAGACACAAAGTGAACGTGACGAGTTGTATGGCAAATTTGTCAAAGCTATACATGAGGTTCAACAGAAGAGCAACTTTAAAAACTTGCTTCTTGAGAAGAAACTGACTGCTCTGGCTGATACACTGGAGAAGAAGGAAGCGCAGCTGAACGAAGTGTTGTCAGCATCCAATTTGGATCCTACTGCTTTAACAGTTGTAACCAGAAAACTTGAGgatGTTTTAGACTCGAAGAACAGTGCTATCAAAGACTTACAGTACGAATTGGCACGTGTTTGCAAGgcTCATAATGATCTCATCCGAACTTACGAAGCAAAGCTCCAGTCGTTCGGAGTACCGACCGAAGAACTCGGGTTCAAGCCCCTCGAGAGCAACGTTGGAGGACAACAACTCGGCCGAGGCCCCGCGGGTCTGGTTGCTGCACCAACTTAAGCTGAAAGAGCGTTATTCTTCGATTTcgttcattttaatttctaagGGACCATTTTATATTAGTTCTGACACATTTATAAcaatttgtaaatagaattCTTGCTACatatgtagttttttttagaaaactgtctaatttatttgcatttttatcttGTGCAATTCCGTCCAGGACATTTTGCATAGAAAAACTCATTTTTACGTTTTCTGGTTTTCTCACTTAAGCTCTTTGATGTACATTTTATATGTTTCtgaaaaatacagtcaaagcAGTTTTCAACTAATCTTGATCTAATTAGCATGTTGTTTTGTTGGGAATTTGgtgtatttttccatgtataaAATATACTGTTATCCATTCATCCAAGCGACTGAAACGTCAGTTGAGAAAGATTCTCATTCTAAGTGTATTCCTGTATCAATGACTTGAATTGTGTGTTCTGTGAAAATTATAGCGAAAATTGTCAACTTGGaagaaattctaattaaaaatattgattattcTACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13851 all species →	GAS	Growth-arrest specific micro-tubule binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025593 all species →	Domain	Growth arrest-specific protein 8 domain	Interproscan
IPR039308 all species →	Family	Growth arrest-specific protein 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31543 all species →	DYNEIN REGULATORY COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19942	GAS8, DRC4; dynein regulatory complex subunit 4	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.